Experiment set4IT076 for Vibrio cholerae E7946 ATCC 55056

Compare to:

ICP1_phage_2.3_MOI_rep1

200 most detrimental genes:

  gene name fitness t score description  
CSW01_01275 +5.1 48.1 phosphomannomutase/phosphoglucomutase compare
CSW01_01315 +5.0 37.2 NAD-dependent alcohol dehydrogenase compare
CSW01_01290 +5.0 44.7 rfbG protein compare
CSW01_01280 +4.9 46.3 GDP-mannose 4,6-dehydratase compare
CSW01_01285 +4.9 43.2 perosamine synthetase compare
CSW01_01325 +4.9 10.3 acetyltransferase compare
CSW01_01320 +4.9 42.7 acyl-CoA reductase compare
CSW01_01345 +4.9 43.3 glycosyl transferase family 1 compare
CSW01_01310 +4.8 46.3 long-chain fatty acid--CoA ligase compare
CSW01_01270 +4.8 37.0 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
CSW01_01250 +4.7 44.7 polymerase compare
CSW01_01305 +4.7 28.3 acyl carrier protein compare
CSW01_01360 +4.6 29.6 sugar transferase compare
CSW01_01260 +4.6 42.7 polysaccharide deacetylase compare
CSW01_01350 +4.5 41.6 polysaccharide biosynthesis protein compare
CSW01_01295 +4.5 17.9 ABC transporter permease compare
CSW01_01300 +4.4 17.2 sugar ABC transporter compare
CSW01_01190 +4.1 32.1 glycosyltransferase family 2 protein compare
CSW01_02085 +4.1 28.3 UTP--glucose-1-phosphate uridylyltransferase compare
CSW01_01185 +4.1 31.4 ADP-heptose--LPS heptosyltransferase compare
CSW01_09145 +3.5 23.1 PTS fructose transporter subunit IIA compare
CSW01_01245 +3.5 16.9 lipopolysaccharide heptosyltransferase II compare
CSW01_01390 +3.4 28.2 mannose-6-phosphate isomerase, class I compare
CSW01_01830 +3.3 18.6 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
CSW01_01265 +3.2 12.6 ADP-L-glycero-D-mannoheptose-6-epimerase compare
CSW01_04650 +2.7 6.4 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
CSW01_08465 +2.4 9.0 ABC transporter ATP-binding protein compare
CSW01_06025 +2.2 11.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
CSW01_01195 +2.1 7.1 ADP-heptose--LPS heptosyltransferase I compare
CSW01_03815 +2.1 6.1 peroxidase compare
CSW01_04935 +2.1 2.1 phosphocarrier protein HPr compare
CSW01_01255 +2.0 5.8 acyltransferase compare
CSW01_12340 +1.9 4.7 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase compare
CSW01_00900 +1.9 3.3 hypothetical protein compare
CSW01_08450 +1.8 4.5 antimicrobial peptide ABC transporter permease SapB compare
CSW01_08445 +1.7 6.5 ABC transporter substrate-binding protein compare
CSW01_06075 +1.6 5.9 DUF3581 domain-containing protein compare
CSW01_11275 +1.6 4.7 NADPH-dependent ferric siderophore reductase compare
CSW01_05180 +1.5 2.3 tRNA-Asn compare
CSW01_15000 +1.5 2.8 rfbP protein compare
CSW01_18460 +1.5 2.2 hypothetical protein compare
CSW01_14280 +1.4 1.8 DUF3302 domain-containing protein compare
CSW01_12480 +1.3 1.2 sigma-E factor negative regulatory protein RseA compare
CSW01_12515 +1.3 3.0 DUF1107 domain-containing protein compare
CSW01_08685 +1.3 5.6 glycogen synthase compare
CSW01_12755 +1.3 2.2 anti-sigma B factor antagonist compare
CSW01_00620 +1.2 4.9 class I adenylate cyclase compare
CSW01_03470 +1.2 6.2 peptide chain release factor 3 compare
CSW01_17880 +1.2 2.6 hypothetical protein compare
CSW01_13950 +1.1 2.0 hypothetical protein compare
CSW01_07580 +1.1 1.5 hypothetical protein compare
CSW01_12360 +1.1 1.8 TIGR00153 family protein compare
CSW01_14130 +1.1 1.3 hypothetical protein compare
CSW01_10035 +1.1 1.0 YnhF family membrane protein compare
CSW01_00215 +1.0 6.3 potassium uptake protein TrkH compare
CSW01_01420 +1.0 6.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
CSW01_18020 +1.0 2.4 DEAD/DEAH box helicase compare
CSW01_07835 +1.0 5.4 catalase-peroxidase compare
CSW01_07820 +1.0 1.8 RidA family protein compare
CSW01_11710 +1.0 3.1 transcriptional regulator compare
CSW01_08260 +1.0 2.9 hypothetical protein compare
CSW01_19095 +1.0 3.3 DUF445 domain-containing protein compare
CSW01_19250 +1.0 2.1 hypothetical protein compare
CSW01_06925 +1.0 1.6 hypothetical protein compare
CSW01_04870 +1.0 2.3 ribosome silencing factor compare
CSW01_03155 +1.0 3.1 RNA polymerase-binding transcription factor DksA compare
CSW01_16290 +1.0 1.0 DUF1289 domain-containing protein compare
CSW01_17140 +0.9 3.2 urease compare
CSW01_19325 +0.9 2.7 MltR family transcriptional regulator compare
CSW01_15730 +0.9 0.9 VOC family protein compare
CSW01_11580 +0.9 3.4 sigma factor-binding protein Crl compare
CSW01_02835 +0.9 4.5 RNA polymerase sigma factor RpoS compare
CSW01_09600 +0.9 2.3 DNA-binding protein HU-beta compare
CSW01_09495 +0.9 1.3 histidine triad nucleotide-binding protein compare
CSW01_06945 +0.9 2.5 hypothetical protein compare
CSW01_06865 +0.9 3.6 Cof-type HAD-IIB family hydrolase compare
CSW01_10085 +0.9 3.4 beta-ketoacyl-[acyl-carrier-protein] synthase II compare
CSW01_16395 +0.9 0.8 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_06255 +0.9 2.7 hypothetical protein compare
CSW01_05380 +0.8 1.5 YkgJ family cysteine cluster protein compare
CSW01_04595 +0.8 2.1 DUF423 domain-containing protein compare
CSW01_16630 +0.8 0.4 DUF645 domain-containing protein compare
CSW01_10135 +0.8 2.2 hypothetical protein compare
CSW01_18205 +0.8 2.3 dehydratase compare
CSW01_05165 +0.8 1.2 electron transport complex subunit RsxC compare
CSW01_12750 +0.8 1.9 BolA family transcriptional regulator compare
CSW01_05270 +0.8 2.8 iron-sulfur cluster carrier protein ApbC compare
CSW01_10140 +0.8 1.6 hypothetical protein compare
CSW01_07435 +0.8 0.8 hypothetical protein compare
CSW01_07200 +0.8 0.9 cbb3-type cytochrome oxidase assembly protein CcoS compare
CSW01_02255 +0.8 3.7 C4-dicarboxylate ABC transporter substrate-binding protein compare
CSW01_15430 +0.8 1.6 hypothetical protein compare
CSW01_04420 +0.8 1.7 prepilin-type cleavage/methylation domain-containing protein compare
CSW01_04915 +0.8 3.7 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB compare
CSW01_15965 +0.7 1.4 DUF645 domain-containing protein compare
CSW01_11700 +0.7 0.8 hypothetical protein compare
CSW01_04020 +0.7 3.9 vibriobactin biosynthesis amide synthase VibH compare
CSW01_08190 +0.7 4.8 ABC transporter permease compare
CSW01_09000 +0.7 2.5 transcriptional regulator compare
CSW01_18595 +0.7 1.8 VOC family protein compare
CSW01_00235 +0.7 1.3 peptide deformylase compare
CSW01_12950 +0.7 2.1 adenylyl-sulfate kinase compare
CSW01_07720 +0.7 0.9 DUF3802 domain-containing protein compare
CSW01_00495 +0.7 0.6 SOS-response transcriptional repressor compare
CSW01_11345 +0.7 3.4 uracil phosphoribosyltransferase compare
CSW01_09635 +0.7 2.1 sigma-54-dependent Fis family transcriptional regulator compare
CSW01_17870 +0.7 1.5 GIY-YIG nuclease family protein compare
CSW01_00945 +0.7 3.2 XRE family transcriptional regulator compare
CSW01_16505 +0.7 2.5 DUF645 domain-containing protein compare
CSW01_10465 +0.7 1.9 DUF1853 domain-containing protein compare
CSW01_08955 +0.7 0.8 transcriptional regulator compare
CSW01_13470 +0.7 3.0 transcriptional regulator compare
CSW01_12040 +0.7 2.2 DUF1499 domain-containing protein compare
CSW01_09515 +0.7 3.9 Na+/H+ antiporter NhaB compare
CSW01_03745 +0.7 1.2 ferredoxin compare
CSW01_05700 +0.7 2.2 DUF2878 domain-containing protein compare
CSW01_03330 +0.7 1.0 transcription elongation factor GreA compare
CSW01_09125 +0.7 2.8 PTS fructose transporter subunit IIA compare
CSW01_16210 +0.7 0.7 VOC family protein compare
CSW01_17905 +0.7 2.1 aquaporin family protein compare
CSW01_05280 +0.7 2.9 uridine kinase compare
CSW01_04940 +0.6 0.7 hypothetical protein compare
CSW01_03025 +0.6 1.5 hypothetical protein compare
CSW01_16195 +0.6 0.6 DUF645 domain-containing protein compare
CSW01_03095 +0.6 1.9 hypothetical protein compare
CSW01_17175 +0.6 2.2 ABC transporter permease compare
CSW01_08055 +0.6 1.7 amino acid ABC transporter substrate-binding protein compare
CSW01_03975 +0.6 2.1 exodeoxyribonuclease VII large subunit compare
CSW01_09605 +0.6 1.9 endopeptidase La compare
CSW01_11085 +0.6 1.6 hypothetical protein compare
CSW01_06235 +0.6 1.2 hypothetical protein compare
CSW01_11680 +0.6 2.5 protein BolA compare
CSW01_15695 +0.6 0.6 DUF3265 domain-containing protein compare
CSW01_02020 +0.6 0.9 phosphoadenosine phosphosulfate reductase compare
CSW01_14420 +0.6 1.9 peptidase M23 compare
CSW01_04465 +0.6 1.1 hypothetical protein compare
CSW01_10355 +0.6 1.7 phosphohistidine phosphatase SixA compare
CSW01_17340 +0.6 1.7 23S rRNA methyltransferase compare
CSW01_02860 +0.6 2.0 sulfate ABC transporter permease subunit CysW compare
CSW01_12975 +0.6 2.4 Crp/Fnr family transcriptional regulator compare
CSW01_07960 +0.6 1.3 DUF417 domain-containing protein compare
CSW01_04825 +0.6 1.8 hypothetical protein compare
CSW01_09690 +0.6 1.2 acyl-CoA thioesterase compare
CSW01_10470 +0.6 2.9 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
CSW01_07920 +0.6 1.4 lipid A modification system glycine carrier protein AlmF compare
CSW01_18880 +0.6 1.6 hypothetical protein compare
CSW01_03075 +0.6 0.6 phosphoheptose isomerase compare
CSW01_09055 +0.6 1.4 DUF2787 domain-containing protein compare
CSW01_17080 +0.6 0.7 DUF3319 domain-containing protein compare
CSW01_01530 +0.6 3.7 cyclic nucleotide-binding protein compare
CSW01_14440 +0.6 1.5 redox-sensitive transcriptional activator SoxR compare
CSW01_10725 +0.6 2.8 hypothetical protein compare
CSW01_07270 +0.6 1.6 toxin-activating lysine-acyltransferase RtxC compare
CSW01_07195 +0.6 0.9 cytochrome biogenesis protein compare
CSW01_10710 +0.6 3.2 deferrochelatase compare
CSW01_15275 +0.6 1.5 hypothetical protein compare
CSW01_06045 +0.6 1.5 lipoprotein compare
CSW01_07485 +0.6 1.9 cell division protein ZapC compare
CSW01_02865 +0.6 2.9 sulfate/thiosulfate import ATP-binding protein CysA compare
CSW01_02555 +0.6 1.8 amino acid transporter compare
CSW01_05240 +0.6 0.9 CBS domain-containing protein compare
CSW01_12330 +0.6 3.1 ADP-ribose diphosphatase compare
CSW01_10965 +0.6 1.5 phage tail protein compare
CSW01_15755 +0.6 0.4 hypothetical protein compare
CSW01_08720 +0.6 0.9 arginyltransferase compare
CSW01_09260 +0.6 2.7 peptidylprolyl isomerase compare
CSW01_04585 +0.6 2.5 tRNA 4-thiouridine(8) synthase ThiI compare
CSW01_19300 +0.6 2.0 polymer-forming cytoskeletal family protein compare
CSW01_18725 +0.6 0.6 TetR/AcrR family transcriptional regulator compare
CSW01_17480 +0.6 2.1 LacI family transcriptional regulator compare
CSW01_03145 +0.6 1.2 polynucleotide adenylyltransferase PcnB compare
CSW01_05465 +0.5 2.8 CPBP family intramembrane metalloprotease compare
CSW01_07745 +0.5 2.2 DNA ligase compare
CSW01_09560 +0.5 1.7 orotidine-5'-phosphate decarboxylase compare
CSW01_04045 +0.5 3.2 vibriobactin biosynthesis 4'-phosphopantetheinyl transferase VibD compare
CSW01_18680 +0.5 1.4 heme utilization protein HutZ compare
CSW01_10765 +0.5 1.6 thioredoxin-dependent thiol peroxidase compare
CSW01_07000 +0.5 1.4 response regulator compare
CSW01_15260 +0.5 1.8 hypothetical protein compare
CSW01_08165 +0.5 1.4 carboxynorspermidine synthase compare
CSW01_11760 +0.5 1.6 DUF2850 domain-containing protein compare
CSW01_17285 +0.5 2.3 peptide-methionine (R)-S-oxide reductase compare
CSW01_09355 +0.5 1.9 DUF2219 domain-containing protein compare
CSW01_08045 +0.5 1.6 hypothetical protein compare
CSW01_18895 +0.5 1.2 chemotaxis protein CheV compare
CSW01_08995 +0.5 1.6 transcriptional regulator compare
CSW01_12245 +0.5 1.8 bifunctional protein-disulfide isomerase/oxidoreductase DsbC compare
CSW01_15860 +0.5 0.7 DUF645 domain-containing protein compare
CSW01_04260 +0.5 1.2 pilus assembly protein compare
CSW01_07965 +0.5 1.8 LysR family transcriptional regulator compare
CSW01_07035 +0.5 2.4 chemotaxis protein CheW compare
CSW01_09920 +0.5 0.7 chromosome partitioning protein ParA compare
CSW01_09970 +0.5 1.1 peptide-methionine (R)-S-oxide reductase compare
CSW01_07090 +0.5 0.9 type VI secretion system tube protein Hcp compare
CSW01_04850 +0.5 1.1 septal ring lytic transglycosylase RlpA compare
CSW01_11835 +0.5 1.9 tRNA-binding protein compare
CSW01_16705 +0.5 1.0 hypothetical protein compare
CSW01_06615 +0.5 0.8 DUF2947 domain-containing protein compare
CSW01_13615 +0.5 2.8 GGDEF domain-containing protein compare
CSW01_02275 +0.5 3.1 arginine:ornithine antiporter compare


Specific Phenotypes

None in this experiment

For Vibrio cholerae E7946 ATCC 55056 in phage experiments

For phage ICP1_phage across organisms