Experiment set4IT076 for Methanococcus maripaludis JJ

Compare to:

Iron limitation (0.2x), formate media

200 most important genes:

  gene name fitness t score description  
MMJJ_RS00235 -6.6 -23.4 hypothetical protein compare
MMJJ_RS04485 -5.7 -10.9 riboflavin synthase compare
MMJJ_RS03895 -5.5 -5.4 hydrogenase expression/formation protein HypE compare
MMJJ_RS04200 -5.5 -7.5 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS09375 -5.3 -2.6 hypothetical protein compare
MMJJ_RS02090 -4.8 -6.6 tyramine--L-glutamate ligase compare
MMJJ_RS06860 -4.8 -6.5 hypothetical protein compare
MMJJ_RS05650 -4.7 -3.3 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS06490 -4.6 -3.2 methanogenesis marker 2 protein compare
MMJJ_RS05065 -4.6 -4.9 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS00275 -4.6 -3.4 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS06510 -4.5 -4.1 LL-diaminopimelate aminotransferase compare
MMJJ_RS06855 -4.5 -2.1 DUF2104 domain-containing protein compare
MMJJ_RS03055 -4.4 -4.4 hypothetical protein compare
MMJJ_RS01750 -4.4 -3.8 ferrous iron transport protein A compare
MMJJ_RS08065 -4.3 -2.8 precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT compare
MMJJ_RS05450 -4.3 -16.9 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMJJ_RS03760 -4.2 -5.3 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS00580 -4.2 -2.7 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS03580 -4.2 -4.9 TIGR00303 family protein compare
MMJJ_RS03065 -4.2 -13.2 CBS domain-containing protein compare
MMJJ_RS06250 -4.1 -2.8 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS06875 -4.1 -3.7 hypothetical protein compare
MMJJ_RS03615 -4.0 -4.5 cobalt-precorrin-8 methylmutase compare
MMJJ_RS05575 -4.0 -6.0 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS02920 -4.0 -3.4 30S ribosomal protein S27ae compare
MMJJ_RS07665 -4.0 -24.1 formate dehydrogenase subunit alpha compare
MMJJ_RS06840 -3.9 -4.6 nickel-dependent hydrogenase large subunit compare
MMJJ_RS03875 -3.9 -5.3 CBS domain-containing protein compare
MMJJ_RS03190 -3.8 -3.7 phosphopyruvate hydratase compare
MMJJ_RS06725 -3.8 -14.5 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS05930 -3.8 -3.0 cell division protein SepF compare
MMJJ_RS04475 -3.8 -6.0 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS07705 -3.8 -4.4 GTP-binding protein EngB compare
MMJJ_RS01475 -3.8 -3.0 signal recognition particle-docking protein FtsY compare
MMJJ_RS08330 -3.7 -4.6 SufD family Fe-S cluster assembly protein compare
MMJJ_RS08250 -3.7 -7.9 hydrogenase maturation peptidase HycI compare
MMJJ_RS05490 -3.7 -3.6 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS05610 -3.7 -5.6 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS03670 -3.7 -6.2 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS08625 -3.7 -8.1 magnesium/cobalt transporter CorA compare
MMJJ_RS03840 -3.6 -4.9 DHH family phosphoesterase compare
MMJJ_RS07000 -3.6 -2.7 TrkH family potassium uptake protein compare
MMJJ_RS01935 -3.5 -5.5 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS03270 -3.5 -2.9 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS05535 -3.5 -17.0 hypothetical protein compare
MMJJ_RS08055 -3.5 -9.2 methanogenesis marker 14 protein compare
MMJJ_RS05260 -3.5 -7.0 ATP-grasp domain-containing protein compare
MMJJ_RS06390 -3.4 -3.0 NADPH-dependent F420 reductase compare
MMJJ_RS07655 -3.4 -14.4 hypothetical protein compare
MMJJ_RS07950 -3.4 -4.4 4Fe-4S binding protein compare
MMJJ_RS00570 -3.4 -2.3 ribonuclease P compare
MMJJ_RS00125 -3.4 -3.2 KEOPS complex subunit Cgi121 compare
MMJJ_RS07970 -3.4 -3.1 O-phospho-L-seryl-tRNA:Cys-tRNA synthase compare
MMJJ_RS08020 -3.4 -8.9 nucleotidyltransferase domain-containing protein compare
MMJJ_RS05780 -3.3 -3.9 flagellin compare
MMJJ_RS06040 -3.3 -4.9 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS06575 -3.3 -4.6 prephenate dehydrogenase compare
MMJJ_RS07670 -3.3 -17.4 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
MMJJ_RS06910 -3.3 -4.6 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS00215 -3.3 -3.1 CCA tRNA nucleotidyltransferase compare
MMJJ_RS04685 -3.3 -12.3 carbamoyltransferase HypF compare
MMJJ_RS07380 -3.2 -10.9 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMJJ_RS03125 -3.2 -6.3 GMC oxidoreductase compare
MMJJ_RS05360 -3.2 -8.3 nickel-responsive transcriptional regulator NikR compare
MMJJ_RS03820 -3.2 -5.8 hydrogenase formation protein HypD compare
MMJJ_RS05995 -3.2 -3.3 ATP-binding cassette domain-containing protein compare
MMJJ_RS00520 -3.2 -10.1 PDGLE domain-containing protein compare
MMJJ_RS03060 -3.2 -3.4 methanogenesis marker 7 protein compare
MMJJ_RS06485 -3.1 -4.7 phosphoglycerate kinase compare
MMJJ_RS02200 -3.1 -13.0 chorismate pyruvate-lyase family protein compare
MMJJ_RS05330 -3.0 -3.2 DNA polymerase II large subunit compare
MMJJ_RS03295 -3.0 -15.1 PHP domain-containing protein compare
MMJJ_RS04155 -3.0 -7.5 hypothetical protein compare
MMJJ_RS06730 -3.0 -9.0 ATP-binding cassette domain-containing protein compare
MMJJ_RS09175 -3.0 -2.0 anthranilate synthase component I compare
MMJJ_RS05950 -2.9 -4.8 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS07015 -2.9 -2.3 PFL family protein compare
MMJJ_RS08000 -2.9 -9.7 HesA/MoeB/ThiF family protein compare
MMJJ_RS02275 -2.9 -4.7 nucleotidyltransferase domain-containing protein compare
MMJJ_RS04520 -2.9 -7.5 coenzyme F430 synthase compare
MMJJ_RS01565 -2.9 -8.0 TIGR00267 family protein compare
MMJJ_RS03150 -2.9 -7.3 2-phospho-L-lactate transferase compare
MMJJ_RS07660 -2.9 -11.3 carbonic anhydrase compare
MMJJ_RS00355 -2.9 -3.8 ribonuclease P protein component 4 compare
MMJJ_RS06915 -2.9 -13.4 helix-turn-helix domain-containing protein compare
MMJJ_RS08005 -2.9 -18.0 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMJJ_RS07275 -2.8 -3.6 formate--phosphoribosylaminoimidazolecarboxamide ligase compare
MMJJ_RS09190 -2.8 -2.5 tryptophan synthase subunit beta compare
MMJJ_RS06785 -2.8 -8.1 RNA ligase partner protein compare
MMJJ_RS07245 -2.8 -6.9 amidohydrolase family protein compare
MMJJ_RS08340 -2.8 -5.9 archaeoflavoprotein AfpA compare
MMJJ_RS07410 -2.7 -4.8 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS04790 -2.7 -4.2 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS06110 -2.7 -2.9 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC compare
MMJJ_RS06175 -2.7 -3.0 DUF1743 domain-containing protein compare
MMJJ_RS04655 -2.7 -5.8 FAD-dependent oxidoreductase compare
MMJJ_RS06255 -2.7 -6.7 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS00530 -2.6 -14.1 cobalt ECF transporter T component CbiQ compare
MMJJ_RS03660 -2.6 -3.6 DUF447 family protein compare
MMJJ_RS06155 -2.6 -4.7 phosphatidylglycerophosphatase A compare
MMJJ_RS06625 -2.6 -2.4 pyruvate synthase subunit PorB compare
MMJJ_RS01870 -2.6 -2.8 methanogenesis marker 15 protein compare
MMJJ_RS07720 -2.6 -2.4 UPF0058 family protein compare
MMJJ_RS00210 -2.6 -2.6 DUF530 family protein compare
MMJJ_RS03865 -2.6 -2.3 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS00270 -2.6 -3.7 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS03620 -2.6 -4.9 DUF2097 domain-containing protein compare
MMJJ_RS01345 -2.6 -4.2 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS03830 -2.6 -9.2 CBS domain-containing protein compare
MMJJ_RS08855 -2.5 -4.9 cyclic pyranopterin monophosphate synthase MoaC compare
MMJJ_RS00475 -2.5 -2.0 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS08080 -2.5 -9.4 TIGR00300 family protein compare
MMJJ_RS07995 -2.5 -8.9 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS06240 -2.5 -2.1 dihydropteroate synthase-like protein compare
MMJJ_RS05655 -2.5 -7.7 HisA/HisF family protein compare
MMJJ_RS03110 -2.5 -5.0 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS06695 -2.5 -4.1 amidohydrolase compare
MMJJ_RS04730 -2.5 -3.5 tyrosine decarboxylase MfnA compare
MMJJ_RS05155 -2.4 -6.7 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMJJ_RS06705 -2.4 -5.9 bifunctional NADP phosphatase/NAD kinase compare
MMJJ_RS05190 -2.4 -7.7 gamma carbonic anhydrase family protein compare
MMJJ_RS05590 -2.4 -2.3 homoserine dehydrogenase compare
MMJJ_RS04800 -2.4 -6.2 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS07155 -2.4 -9.5 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS05225 -2.4 -2.1 Gar1/Naf1 family protein compare
MMJJ_RS05810 -2.4 -7.5 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS00515 -2.4 -12.6 cobalt transporter CbiM compare
MMJJ_RS03230 -2.4 -3.9 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS04675 -2.4 -5.8 thiamine pyrophosphate-binding protein compare
MMJJ_RS05620 -2.4 -5.8 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS06835 -2.4 -11.5 4Fe-4S binding protein compare
MMJJ_RS06185 -2.4 -5.5 cobalamin biosynthesis protein compare
MMJJ_RS07345 -2.4 -5.6 homocysteine biosynthesis protein compare
MMJJ_RS03815 -2.3 -2.7 nascent polypeptide-associated complex protein compare
MMJJ_RS08095 -2.3 -5.0 cobyric acid synthase CobQ compare
MMJJ_RS03630 -2.3 -12.3 AMP phosphorylase compare
MMJJ_RS07360 -2.3 -1.9 TIGR00269 family protein compare
MMJJ_RS05375 -2.3 -14.1 radical SAM protein compare
MMJJ_RS05295 -2.3 -9.1 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS06750 -2.3 -2.3 homoaconitase large subunit compare
MMJJ_RS00560 -2.3 -3.3 homoisocitrate dehydrogenase compare
MMJJ_RS06760 -2.3 -5.4 Ni-sirohydrochlorin a,c-diamide synthase compare
MMJJ_RS04110 -2.3 -5.1 hypothetical protein compare
MMJJ_RS07430 -2.2 -4.2 ribonuclease VapC compare
MMJJ_RS06865 -2.2 -3.2 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS06270 -2.2 -8.0 dethiobiotin synthase compare
MMJJ_RS07350 -2.2 -4.1 4Fe-4S binding protein compare
MMJJ_RS07640 -2.2 -17.1 cache domain-containing protein compare
MMJJ_RS00600 -2.2 -2.3 hydroxymethylbilane synthase compare
MMJJ_RS05070 -2.2 -2.6 DNA primase catalytic subunit PriS compare
MMJJ_RS01415 -2.2 -2.6 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS03115 -2.2 -5.5 sulfopyruvate decarboxylase subunit alpha compare
MMJJ_RS01600 -2.2 -3.9 radical SAM protein compare
MMJJ_RS01865 -2.2 -4.7 peptidyl-tRNA hydrolase Pth2 compare
MMJJ_RS05765 -2.2 -1.2 flagellar protein E compare
MMJJ_RS04985 -2.2 -4.3 glutamyl-tRNA reductase compare
MMJJ_RS03810 -2.2 -2.6 AIR synthase-related protein compare
MMJJ_RS08840 -2.1 -4.2 calcium/sodium antiporter compare
MMJJ_RS02935 -2.1 -3.8 DNA-directed RNA polymerase subunit E'' compare
MMJJ_RS00265 -2.1 -6.9 TIGR02253 family HAD-type hydrolase compare
MMJJ_RS01755 -2.1 -2.9 ferrous iron transport protein B compare
MMJJ_RS00645 -2.1 -9.2 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS05445 -2.1 -2.5 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS02055 -2.1 -12.9 GTP 3',8-cyclase MoaA compare
MMJJ_RS00450 -2.1 -1.9 DUF126 domain-containing protein compare
MMJJ_RS05720 -2.0 -2.9 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS07945 -2.0 -3.0 4Fe-4S binding protein compare
MMJJ_RS03785 -2.0 -2.8 hypothetical protein compare
MMJJ_RS01410 -2.0 -5.2 archaeal proteasome endopeptidase complex subunit beta compare
MMJJ_RS05770 -2.0 -2.8 flagellar protein D compare
MMJJ_RS02045 -2.0 -2.7 molybdenum cofactor guanylyltransferase compare
MMJJ_RS04975 -2.0 -1.9 glycosyltransferase family 4 protein compare
MMJJ_RS04995 -2.0 -4.9 Tfx family DNA-binding protein compare
MMJJ_RS04010 -2.0 -7.0 archaeal proteasome endopeptidase complex subunit alpha compare
MMJJ_RS07470 -2.0 -1.9 50S ribosome-binding GTPase compare
MMJJ_RS00075 -2.0 -9.6 AAA family ATPase compare
MMJJ_RS00045 -2.0 -10.2 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMJJ_RS01690 -2.0 -3.6 methanogenesis marker 12 protein compare
MMJJ_RS03225 -2.0 -3.4 4Fe-4S binding protein compare
MMJJ_RS07980 -2.0 -10.0 biotin synthase BioB compare
MMJJ_RS07635 -2.0 -8.8 response regulator transcription factor compare
MMJJ_RS06180 -1.9 -3.2 tryptophan--tRNA ligase compare
MMJJ_RS06050 -1.9 -8.4 molybdopterin molybdotransferase MoeA compare
MMJJ_RS03200 -1.9 -2.4 uroporphyrinogen-III synthase compare
MMJJ_RS00195 -1.9 -2.8 precorrin-3B C(17)-methyltransferase compare
MMJJ_RS00070 -1.9 -3.6 CooT family nickel-binding protein compare
MMJJ_RS00550 -1.9 -8.1 AIR synthase-related protein compare
MMJJ_RS08335 -1.9 -1.9 ABC transporter ATP-binding protein compare
MMJJ_RS08795 -1.9 -2.3 phosphoglucosamine mutase compare
MMJJ_RS03800 -1.8 -9.1 aldolase compare
MMJJ_RS06260 -1.8 -5.7 6-carboxyhexanoate--CoA ligase compare
MMJJ_RS00035 -1.8 -12.5 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMJJ_RS04650 -1.8 -4.6 nitrogenase iron protein compare
MMJJ_RS07650 -1.8 -12.4 formate/nitrite transporter family protein compare
MMJJ_RS05935 -1.8 -2.0 Era-like GTP-binding protein compare
MMJJ_RS00050 -1.8 -8.0 AAA family ATPase compare
MMJJ_RS06375 -1.8 -3.8 UbiX family flavin prenyltransferase compare
MMJJ_RS05540 -1.8 -12.2 LysR family transcriptional regulator compare
MMJJ_RS01880 -1.8 -3.2 RlmE family RNA methyltransferase compare


Specific Phenotypes

For 2 genes in this experiment

For iron Iron (II) chloride tetrahydrate in Methanococcus maripaludis JJ

For iron Iron (II) chloride tetrahydrate across organisms