Experiment set4IT076 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

Deoxyribonucleic acid from herring sperm 10 mg/mL carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_01920 +5.2 28.4 adenine phosphoribosyltransferase conserved
H281DRAFT_04691 +5.2 24.1 glutamate-ammonia-ligase adenylyltransferase conserved
H281DRAFT_02239 +4.7 29.2 resistance to homoserine/threonine (RhtB) family protein conserved
H281DRAFT_06269 +4.4 5.6 hypoxanthine phosphoribosyltransferase compare
H281DRAFT_04171 +4.0 22.2 membrane fusion protein, multidrug efflux system compare
H281DRAFT_04170 +3.9 22.7 multidrug efflux pump compare
H281DRAFT_00315 +3.8 13.7 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_05646 +3.7 9.6 hypothetical protein compare
H281DRAFT_05641 +3.6 14.4 phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein compare
H281DRAFT_05643 +3.4 22.1 phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein compare
H281DRAFT_05645 +3.3 12.9 phospholipid transport system substrate-binding protein compare
H281DRAFT_05642 +3.2 11.5 phospholipid/cholesterol/gamma-HCH transport system permease protein compare
H281DRAFT_00317 +3.1 11.0 O-antigen ligase compare
H281DRAFT_04172 +3.1 5.1 transcriptional regulator, TetR family compare
H281DRAFT_04195 +3.1 5.6 heptosyltransferase-2 compare
H281DRAFT_04844 +2.9 19.1 Glycosyltransferase, GT2 family compare
H281DRAFT_00316 +2.7 11.5 ADP-heptose:LPS heptosyltransferase compare
H281DRAFT_03947 +2.7 13.2 Tetratricopeptide repeat-containing protein compare
H281DRAFT_04404 +2.5 9.9 GreA/GreB family elongation factor compare
H281DRAFT_04826 +2.5 7.2 rhamnosyltransferase compare
H281DRAFT_04635 +2.3 2.7 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) compare
H281DRAFT_04849 +2.2 7.9 UDP-glucose 4-epimerase compare
H281DRAFT_00390 +2.2 3.8 Beta-barrel assembly machine subunit BamC compare
H281DRAFT_00528 +2.1 4.1 hypothetical protein conserved
H281DRAFT_04848 +2.1 6.1 hypothetical protein compare
H281DRAFT_02683 +2.1 2.8 xanthine dehydrogenase accessory factor compare
H281DRAFT_00487 +2.0 3.5 bacterial peptide chain release factor 2 (bRF-2) compare
H281DRAFT_04850 +1.9 4.8 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase compare
H281DRAFT_00896 +1.9 3.4 ATP-dependent Clp protease proteolytic subunit ClpP compare
H281DRAFT_04388 +1.9 2.6 trehalose 6-phosphatase (EC 3.1.3.12) compare
H281DRAFT_06277 +1.9 7.2 hypothetical protein compare
H281DRAFT_02065 +1.9 3.5 rfaE bifunctional protein, domain II compare
H281DRAFT_01025 +1.8 2.7 transcriptional regulator, MarR family compare
H281DRAFT_04851 +1.8 9.4 NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC compare
H281DRAFT_00270 +1.8 4.2 Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family compare
H281DRAFT_03612 +1.8 9.9 phospholipid-binding lipoprotein MlaA compare
H281DRAFT_03525 +1.8 8.1 cold-shock DNA-binding protein family compare
H281DRAFT_04735 +1.8 3.6 Membrane-anchored ribosome-binding protein, inhibits growth in stationary phase, ElaB/YqjD/DUF883 family compare
H281DRAFT_04008 +1.7 4.2 RNAse PH compare
H281DRAFT_03614 +1.7 9.9 ABC-type transporter Mla maintaining outer membrane lipid asymmetry, MlaC component compare
H281DRAFT_06266 +1.7 4.8 putative (di)nucleoside polyphosphate hydrolase compare
H281DRAFT_03616 +1.7 9.6 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
H281DRAFT_01317 +1.6 4.0 ribulose 1,5-bisphosphate carboxylase large subunit compare
H281DRAFT_03613 +1.6 6.9 hypothetical protein compare
H281DRAFT_04858 +1.6 2.2 hypothetical protein compare
H281DRAFT_03964 +1.5 5.8 adenosine deaminase conserved
H281DRAFT_03440 +1.5 2.5 PAP2 superfamily protein compare
H281DRAFT_04297 +1.5 9.1 adenosylcobinamide-phosphate synthase compare
H281DRAFT_04734 +1.5 5.9 Uncharacterized membrane protein YqjE compare
H281DRAFT_04263 +1.5 4.9 putative redox protein compare
H281DRAFT_00848 +1.5 2.6 ribosomal large subunit pseudouridine synthase D (EC 5.4.99.-) compare
H281DRAFT_01914 +1.5 6.7 Predicted PurR-regulated permease PerM compare
H281DRAFT_02864 +1.4 3.8 precorrin-8X methylmutase compare
H281DRAFT_01919 +1.4 5.0 Threonine/homoserine/homoserine lactone efflux protein compare
H281DRAFT_03917 +1.4 3.1 Uncharacterized integral membrane protein compare
H281DRAFT_03524 +1.4 5.9 hypothetical protein compare
H281DRAFT_01803 +1.4 2.7 transcriptional regulator, HxlR family compare
H281DRAFT_02905 +1.4 2.4 L-lactate dehydrogenase complex protein LldE compare
H281DRAFT_01436 +1.4 1.8 NTE family protein compare
H281DRAFT_02410 +1.3 5.4 glycine cleavage system H protein compare
H281DRAFT_02088 +1.3 5.4 carbonic anhydrase compare
H281DRAFT_04661 +1.3 4.0 paraquat-inducible protein A compare
H281DRAFT_04499 +1.3 10.6 GTP pyrophosphokinase compare
H281DRAFT_00788 +1.3 6.9 transcriptional regulator, LysR family compare
H281DRAFT_06100 +1.3 2.0 peptide/nickel transport system substrate-binding protein compare
H281DRAFT_06281 +1.3 5.5 MJ0042 family finger-like domain-containing protein compare
H281DRAFT_01612 +1.3 5.4 2OG-Fe(II) oxygenase superfamily protein compare
H281DRAFT_01390 +1.3 1.9 hypothetical protein compare
H281DRAFT_00102 +1.3 2.6 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
H281DRAFT_00359 +1.3 2.0 Acyl-CoA dehydrogenase compare
H281DRAFT_06273 +1.2 2.5 AmpD protein compare
H281DRAFT_03023 +1.2 1.5 Protein of unknown function (DUF2866) compare
H281DRAFT_04846 +1.2 2.9 Putative flippase GtrA (transmembrane translocase of bactoprenol-linked glucose) compare
H281DRAFT_05778 +1.2 2.2 flagellar motor switch protein FliN/FliY compare
H281DRAFT_05667 +1.2 7.1 serine protease DegQ compare
H281DRAFT_05376 +1.2 3.8 hypothetical protein compare
H281DRAFT_01483 +1.2 2.4 hypothetical protein compare
H281DRAFT_00152 +1.2 1.9 Protein of unknown function (DUF3460) compare
H281DRAFT_04222 +1.2 6.8 ATP-dependent RNA helicase RhlE compare
H281DRAFT_02866 +1.2 5.5 precorrin-3 methyltransferase (EC 2.1.1.131) compare
H281DRAFT_00895 +1.2 5.2 trigger factor compare
H281DRAFT_00510 +1.2 6.5 Beta-barrel assembly machine subunit BamC compare
H281DRAFT_06272 +1.2 1.7 uncharacterized protein compare
H281DRAFT_01184 +1.1 1.3 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_03130 +1.1 1.1 transcriptional regulator, XRE family with cupin sensor compare
H281DRAFT_00885 +1.1 5.8 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ compare
H281DRAFT_03409 +1.1 1.6 Protein of unknown function (DUF3072) compare
H281DRAFT_01632 +1.1 7.3 LuxR family transcriptional regulator, quorum-sensing transcription factor LasR compare
H281DRAFT_04549 +1.1 2.3 Protein of unknown function (DUF3619) compare
H281DRAFT_00145 +1.1 6.2 adenosylcobinamide kinase /adenosylcobinamide-phosphate guanylyltransferase compare
H281DRAFT_06310 +1.1 4.2 Barstar (barnase inhibitor) compare
H281DRAFT_06567 +1.1 1.4 hypothetical protein compare
H281DRAFT_06529 +1.1 5.1 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
H281DRAFT_04733 +1.1 3.6 Protein of unknown function (DUF3318) compare
H281DRAFT_01633 +1.1 3.5 hypothetical protein compare
H281DRAFT_03026 +1.0 5.8 phosphoenolpyruvate mutase compare
H281DRAFT_03227 +1.0 1.7 transcriptional regulator, LacI family compare
H281DRAFT_01253 +1.0 2.5 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_00787 +1.0 4.3 tartronate-semialdehyde synthase compare
H281DRAFT_01749 +1.0 1.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_00397 +1.0 2.1 GreA/GreB family elongation factor compare
H281DRAFT_06276 +1.0 2.9 hypothetical protein compare
H281DRAFT_00271 +1.0 2.7 2-aminoadipate transaminase compare
H281DRAFT_01748 +1.0 3.4 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
H281DRAFT_05102 +1.0 2.4 ribosome maturation factor RimP compare
H281DRAFT_00146 +1.0 5.5 adenosylcobyric acid synthase (glutamine-hydrolysing) compare
H281DRAFT_04400 +1.0 6.9 membrane-bound lytic murein transglycosylase D compare
H281DRAFT_03061 +1.0 2.3 hypothetical protein compare
H281DRAFT_01223 +1.0 2.6 monosaccharide ABC transporter ATP-binding protein, CUT2 family compare
H281DRAFT_04931 +1.0 1.5 Surfactin synthase thioesterase subunit compare
H281DRAFT_02651 +1.0 1.4 transcriptional regulator, MerR family compare
H281DRAFT_05755 +0.9 1.6 flagellar biosynthesis protein FlhG compare
H281DRAFT_00298 +0.9 2.5 hypothetical protein compare
H281DRAFT_00747 +0.9 1.8 tRNA_Met_CAT compare
H281DRAFT_01270 +0.9 3.7 Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains compare
H281DRAFT_01984 +0.9 5.5 protein SCO1/2 compare
H281DRAFT_03113 +0.9 2.4 2-dehydropantoate 2-reductase compare
H281DRAFT_00278 +0.9 1.9 Outer membrane protein OmpA compare
H281DRAFT_00946 +0.9 2.2 protein-tyrosine phosphatase compare
H281DRAFT_03555 +0.9 4.1 thioredoxin reductase (NADPH) compare
H281DRAFT_00998 +0.9 1.1 outer membrane protein, multidrug efflux system compare
H281DRAFT_02860 +0.9 4.9 cobalt-precorrin-5B (C1)-methyltransferase compare
H281DRAFT_03611 +0.9 1.2 hopanoid-associated phosphorylase compare
H281DRAFT_01464 +0.9 1.5 Anti-sigma-K factor RskA compare
H281DRAFT_02361 +0.9 5.6 transporter, CPA2 family compare
H281DRAFT_02818 +0.9 2.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_03473 +0.9 2.5 hypothetical protein compare
H281DRAFT_05914 +0.9 2.1 hypothetical protein compare
H281DRAFT_02693 +0.9 1.6 transcriptional regulator, DeoR family compare
H281DRAFT_04562 +0.9 2.1 polyribonucleotide nucleotidyltransferase compare
H281DRAFT_05323 +0.9 1.7 hypothetical protein compare
H281DRAFT_04359 +0.9 2.1 Glutaredoxin and related proteins compare
H281DRAFT_03256 +0.9 1.4 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase compare
H281DRAFT_05695 +0.9 2.5 hypothetical protein compare
H281DRAFT_04924 +0.9 4.3 iron complex outermembrane recepter protein compare
H281DRAFT_04659 +0.9 5.4 hypothetical protein compare
H281DRAFT_04923 +0.9 3.7 iron complex transport system substrate-binding protein compare
H281DRAFT_01285 +0.9 2.2 ATP adenylyltransferase compare
H281DRAFT_03521 +0.9 1.9 hypothetical protein compare
H281DRAFT_02865 +0.9 4.9 precorrin-2 C20-methyltransferase /cobalt-factor II C20-methyltransferase compare
H281DRAFT_04229 +0.9 4.8 glycerol kinase compare
H281DRAFT_01838 +0.9 2.3 regulator RcnB of Ni and Co efflux compare
H281DRAFT_03820 +0.8 1.2 methylated-DNA-[protein]-cysteine S-methyltransferase compare
H281DRAFT_04218 +0.8 1.1 hypothetical protein compare
H281DRAFT_01613 +0.8 3.8 Phosphatidylglycerophosphate synthase compare
H281DRAFT_05123 +0.8 1.7 hypothetical protein compare
H281DRAFT_00609 +0.8 3.0 methionine aminopeptidase, type I compare
H281DRAFT_01441 +0.8 1.1 two component heavy metal response transcriptional regulator, winged helix family compare
H281DRAFT_02284 +0.8 2.3 hypothetical protein compare
H281DRAFT_04298 +0.8 1.8 Putative signal transducing protein compare
H281DRAFT_02863 +0.8 2.9 precorrin-3B synthase compare
H281DRAFT_01047 +0.8 1.5 GTP cyclohydrolase II compare
H281DRAFT_01675 +0.8 2.5 PAS/PAC sensor hybrid histidine kinase (EC 2.7.13.3) compare
H281DRAFT_04082 +0.8 2.5 ATP-dependent Clp protease ATP-binding subunit ClpA compare
H281DRAFT_01880 +0.8 1.4 two component transcriptional regulator, LuxR family compare
H281DRAFT_00066 +0.8 1.9 hypothetical protein compare
H281DRAFT_02811 +0.8 1.6 Protein of unknown function (DUF2934) compare
H281DRAFT_06523 +0.8 4.4 protoporphyrin IX magnesium-chelatase (EC 6.6.1.1) compare
H281DRAFT_05784 +0.8 2.6 flagellar assembly protein FliH compare
H281DRAFT_00140 +0.8 2.0 cobalamin-5'-phosphate synthase compare
H281DRAFT_05972 +0.8 1.6 conserved hypothetical protein compare
H281DRAFT_00141 +0.8 2.8 alpha-ribazole phosphatase compare
H281DRAFT_00100 +0.8 4.4 outer membrane protein compare
H281DRAFT_04771 +0.8 2.2 transcriptional regulator, AraC family compare
H281DRAFT_02112 +0.8 5.9 Outer membrane protein (porin) compare
H281DRAFT_03538 +0.8 4.5 bacterial peptide chain release factor 3 (bRF-3) compare
H281DRAFT_05901 +0.8 1.6 Cupin domain-containing protein compare
H281DRAFT_03100 +0.8 2.9 DNA-binding transcriptional regulator, MarR family compare
H281DRAFT_03460 +0.8 0.9 Protein of unknown function (DUF2950) compare
H281DRAFT_02503 +0.8 2.5 Peroxiredoxin compare
H281DRAFT_02362 +0.8 4.8 carboxylate-amine ligase compare
H281DRAFT_06510 +0.8 2.0 methyl-accepting chemotaxis protein compare
H281DRAFT_00706 +0.8 1.1 outer membrane protein compare
H281DRAFT_04857 +0.8 1.2 hypothetical protein compare
H281DRAFT_01766 +0.8 1.5 cytochrome c oxidase subunit 2 compare
H281DRAFT_01502 +0.8 2.6 Protein of unknown function (DUF2917) compare
H281DRAFT_02859 +0.8 2.2 precorrin-6A reductase (EC 1.3.1.54) compare
H281DRAFT_02791 +0.8 1.1 apolipoprotein D and lipocalin family protein compare
H281DRAFT_04845 +0.8 4.0 dolichol-phosphate mannosyltransferase compare
H281DRAFT_04798 +0.8 2.3 Predicted xylanase/chitin deacetylase compare
H281DRAFT_05221 +0.8 1.8 Saccharopine dehydrogenase, NADP-dependent compare
H281DRAFT_02927 +0.8 3.0 DSF synthase compare
H281DRAFT_05274 +0.8 2.2 Uncharacterized protein YcsI, UPF0317 family compare
H281DRAFT_03554 +0.7 4.5 membrane protein DedA, SNARE-associated domain compare
H281DRAFT_00660 +0.7 2.5 Glyoxalase superfamily enzyme, possibly 3-demethylubiquinone-9 3-methyltransferase compare
H281DRAFT_03312 +0.7 3.5 PAS domain S-box-containing protein compare
H281DRAFT_01049 +0.7 1.2 Nucleoside-diphosphate-sugar epimerase compare
H281DRAFT_06488 +0.7 1.5 EAL and modified HD-GYP domain-containing signal transduction protein compare
H281DRAFT_00608 +0.7 2.8 UTP--GlnB (protein PII) uridylyltransferase, GlnD compare
H281DRAFT_06524 +0.7 5.5 cobaltochelatase CobN subunit compare
H281DRAFT_00285 +0.7 2.0 PhnB protein compare
H281DRAFT_06578 +0.7 2.3 NADP-dependent 3-hydroxy acid dehydrogenase YdfG compare
H281DRAFT_01315 +0.7 2.5 probable Rubsico expression protein CbbX compare
H281DRAFT_02754 +0.7 1.7 Glucose/arabinose dehydrogenase, beta-propeller fold compare
H281DRAFT_01241 +0.7 2.5 mandelamide amidase compare
H281DRAFT_04869 +0.7 1.0 imidazolonepropionase compare
H281DRAFT_00355 +0.7 1.8 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
H281DRAFT_03497 +0.7 1.9 transcriptional regulator, DeoR family compare
H281DRAFT_00577 +0.7 1.7 2-haloacid dehalogenase compare
H281DRAFT_03576 +0.7 0.9 two-component system, chemotaxis family, response regulator CheY compare


Specific Phenotypes

For 13 genes in this experiment

For carbon source Deoxyribonucleic acid from herring sperm in Paraburkholderia bryophila 376MFSha3.1

For carbon source Deoxyribonucleic acid from herring sperm across organisms