Experiment set4IT075 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with 1-ethyl-3-methylimidazolium acetate 15 mM

200 most important genes:

  gene name fitness t score description  
AO353_12115 -3.3 -2.3 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_11770 -2.7 -1.9 molecular chaperone Hsp33 compare
AO353_18540 -2.7 -3.1 pseudouridine synthase compare
AO353_12500 -2.6 -2.5 shikimate kinase compare
AO353_22685 -2.5 -4.7 peroxidase compare
AO353_11730 -2.4 -8.1 glutamate--cysteine ligase compare
AO353_09240 -2.2 -3.5 acetylglutamate kinase compare
AO353_06725 -2.2 -2.5 hypothetical protein compare
AO353_03590 -2.1 -3.9 crossover junction endodeoxyribonuclease RuvC compare
AO353_06040 -2.1 -3.9 exodeoxyribonuclease V subunit alpha compare
AO353_23945 -2.1 -3.2 hypothetical protein compare
AO353_27695 -2.0 -7.0 isocitrate dehydrogenase compare
AO353_08110 -2.0 -5.5 glutathione synthetase compare
AO353_09000 -2.0 -5.1 argininosuccinate lyase compare
AO353_07355 -1.9 -5.4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_00825 -1.9 -3.9 porin compare
AO353_04520 -1.9 -5.6 elongation factor 4 compare
AO353_05625 -1.9 -1.9 transcription elongation factor GreA compare
AO353_14775 -1.9 -5.7 hypothetical protein compare
AO353_07075 -1.8 -5.4 elongation factor Tu compare
AO353_05690 -1.8 -3.8 SsrA-binding protein compare
AO353_13100 -1.8 -2.3 GTPase RsgA compare
AO353_14220 -1.8 -1.6 ribosomal large subunit pseudouridine synthase D compare
AO353_10670 -1.7 -6.6 shikimate dehydrogenase compare
AO353_03795 -1.7 -4.3 fumarate hydratase compare
AO353_08165 -1.7 -3.1 pyrroline-5-carboxylate reductase compare
AO353_14940 -1.7 -3.2 malate:quinone oxidoreductase compare
AO353_04355 -1.7 -2.4 homoserine dehydrogenase compare
AO353_27500 -1.7 -2.4 hypothetical protein compare
AO353_04565 -1.7 -5.6 nucleoid-associated protein compare
AO353_02250 -1.7 -2.5 chorismate synthase compare
AO353_00430 -1.7 -3.8 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_07155 -1.7 -5.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_01975 -1.6 -6.5 glycosyl transferase compare
AO353_15250 -1.6 -3.6 cytochrome B compare
AO353_09250 -1.6 -3.0 exodeoxyribonuclease III compare
AO353_20185 -1.6 -5.4 DNA-binding protein compare
AO353_12105 -1.6 -5.9 peptidase S41 compare
AO353_03580 -1.6 -3.2 ATP-dependent DNA helicase RuvB compare
AO353_03585 -1.6 -2.9 ATP-dependent DNA helicase RuvA compare
AO353_09905 -1.6 -7.9 phosphate-binding protein compare
AO353_06050 -1.5 -5.4 exodeoxyribonuclease V subunit gamma compare
AO353_06710 -1.5 -1.7 riboflavin synthase subunit alpha compare
AO353_20170 -1.5 -4.6 trigger factor compare
AO353_16940 -1.5 -4.9 deoxycytidine triphosphate deaminase compare
AO353_04810 -1.5 -2.0 hypothetical protein compare
AO353_14370 -1.5 -5.8 glucose-6-phosphate isomerase compare
AO353_05130 -1.5 -1.9 anti-anti-sigma factor compare
AO353_17885 -1.5 -2.3 hypothetical protein compare
AO353_06720 -1.5 -2.1 NrdR family transcriptional regulator compare
AO353_06045 -1.5 -5.8 exodeoxyribonuclease V subunit beta compare
AO353_06480 -1.5 -3.1 50S rRNA methyltransferase compare
AO353_20175 -1.5 -3.1 ATP-dependent Clp protease proteolytic subunit compare
AO353_08115 -1.4 -5.5 energy transducer TonB compare
AO353_12345 -1.4 -2.1 twin-arginine protein translocation system subunit TatC compare
AO353_19195 -1.4 -3.4 response regulator compare
AO353_04825 -1.4 -5.3 hypothetical protein compare
AO353_04835 -1.4 -8.0 fusaric acid resistance protein compare
AO353_18780 -1.4 -5.6 cobyrinic acid a,c-diamide synthase compare
AO353_15490 -1.4 -2.5 hypothetical protein compare
AO353_18510 -1.4 -2.7 hypothetical protein compare
AO353_25450 -1.4 -2.0 cyanate hydratase compare
AO353_06495 -1.4 -4.3 gamma-glutamyl phosphate reductase compare
AO353_14740 -1.4 -3.3 GTP-binding protein compare
AO353_04190 -1.3 -2.2 glycerol-3-phosphate dehydrogenase compare
AO353_08980 -1.3 -2.8 heme biosynthesis operon protein HemX compare
AO353_04840 -1.3 -7.0 RND transporter compare
AO353_01410 -1.3 -2.8 ribonuclease E compare
AO353_20865 -1.3 -2.1 cold-shock protein compare
AO353_21430 -1.3 -3.0 hypothetical protein compare
AO353_13225 -1.3 -2.8 50S ribosomal protein L9 compare
AO353_09720 -1.3 -1.6 hypothetical protein compare
AO353_03515 -1.3 -1.8 cold-shock protein compare
AO353_09890 -1.2 -3.8 phosphate ABC transporter ATP-binding protein compare
AO353_17100 -1.2 -2.2 hypothetical protein compare
AO353_20495 -1.2 -2.3 NUDIX hydrolase compare
AO353_00355 -1.2 -2.3 transcriptional regulator compare
AO353_04500 -1.2 -2.3 DNA repair protein RecO compare
AO353_16765 -1.2 -2.0 hypothetical protein compare
AO353_03100 -1.2 -1.6 XRE family transcriptional regulator compare
AO353_03275 -1.2 -2.3 LysR family transcriptional regulator compare
AO353_04830 -1.1 -3.7 required for acetate efflux, together with NodT, MFP and FUSC proteins (AO353_04840, AO353_04825, and AO353_04835) (from data) compare
AO353_05550 -1.1 -4.8 pseudouridine synthase compare
AO353_14990 -1.1 -1.6 hypothetical protein compare
AO353_08245 -1.1 -2.4 cell division ATP-binding protein FtsE compare
AO353_05125 -1.1 -3.7 BolA family transcriptional regulator compare
AO353_04175 -1.1 -3.8 glycerol uptake facilitator GlpF compare
AO353_21625 -1.1 -2.2 Fe/S biogenesis protein NfuA compare
AO353_03710 -1.1 -1.7 formyltetrahydrofolate deformylase compare
AO353_19530 -1.1 -1.3 quinohemoprotein amine dehydrogenase compare
AO353_15900 -1.1 -1.8 GTP-binding protein compare
AO353_03420 -1.1 -3.2 phosphogluconate dehydratase compare
AO353_03615 -1.1 -2.2 cold-shock protein compare
AO353_06850 -1.1 -3.4 MFS transporter compare
AO353_21935 -1.1 -1.9 nitrite reductase compare
AO353_02570 -1.1 -2.4 hypothetical protein compare
AO353_14420 -1.1 -3.0 molecular chaperone DnaK compare
AO353_15460 -1.0 -4.6 cytochrome o ubiquinol oxidase subunit III compare
AO353_16805 -1.0 -3.8 recombinase RecA compare
AO353_17035 -1.0 -3.9 hypothetical protein compare
AO353_26115 -1.0 -1.5 hypothetical protein compare
AO353_00650 -1.0 -1.9 cytochrome biogenesis protein compare
AO353_27650 -1.0 -3.1 cell division protein FtsK compare
AO353_09050 -1.0 -3.0 recombinase XerC compare
AO353_22560 -1.0 -3.3 hypothetical protein compare
AO353_12935 -1.0 -2.8 glycosyltransferase compare
AO353_04155 -1.0 -6.3 ornithine carbamoyltransferase compare
AO353_27720 -1.0 -3.2 cupin compare
AO353_22810 -1.0 -1.2 hypothetical protein compare
AO353_01995 -1.0 -6.8 hypothetical protein compare
AO353_19625 -1.0 -2.8 isopentenyl-diphosphate delta-isomerase compare
AO353_06100 -1.0 -1.4 thymidylate synthase compare
AO353_03670 -1.0 -3.2 ornithine acetyltransferase compare
AO353_07645 -1.0 -1.6 sarcosine oxidase subunit gamma compare
AO353_28425 -1.0 -2.5 TetR family transcriptional regulator compare
AO353_09560 -1.0 -1.4 type VI secretion protein compare
AO353_11750 -1.0 -1.7 ATPase compare
AO353_15555 -1.0 -3.1 fumarylacetoacetase compare
AO353_03290 -1.0 -1.6 peptide deformylase compare
AO353_09315 -0.9 -5.6 LysR family transcriptional regulator compare
AO353_15725 -0.9 -2.9 hypothetical protein compare
AO353_19505 -0.9 -2.6 FAD-dependent oxidoreductase compare
AO353_11185 -0.9 -6.6 channel protein TolC compare
AO353_10430 -0.9 -2.1 chromosome partitioning protein ParB compare
AO353_03120 -0.9 -2.8 hypothetical protein compare
AO353_06365 -0.9 -5.8 hypothetical protein compare
AO353_11190 -0.9 -6.3 ABC transporter compare
AO353_20265 -0.9 -1.7 spore coat protein compare
AO353_22135 -0.9 -2.3 anaerobic ribonucleoside-triphosphate reductase activating protein compare
AO353_21635 -0.9 -3.1 cobalamin biosynthesis protein CobE compare
AO353_06415 -0.9 -2.9 hypothetical protein compare
AO353_05150 -0.9 -3.1 ABC transporter ATP-binding protein compare
AO353_09235 -0.9 -4.4 phosphoglucomutase compare
AO353_29005 -0.9 -1.8 hypothetical protein compare
AO353_02060 -0.9 -2.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_14795 -0.9 -2.7 molybdopterin-synthase adenylyltransferase compare
AO353_10930 -0.9 -4.8 DNA polymerase I compare
AO353_17675 -0.9 -3.5 hypothetical protein compare
AO353_04365 -0.9 -3.4 recombinase XerD compare
AO353_02595 -0.9 -2.2 cobalamin synthase compare
AO353_08685 -0.9 -4.5 N-acetylglutamate synthase compare
AO353_21945 -0.9 -2.1 protein nirL compare
AO353_17165 -0.9 -2.2 ATP-dependent helicase compare
AO353_02070 -0.9 -3.8 prephenate dehydratase compare
AO353_02000 -0.9 -2.0 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_13420 -0.9 -1.4 hypothetical protein compare
AO353_03250 -0.9 -1.6 gluconokinase compare
AO353_09135 -0.9 -1.3 cytochrome C compare
AO353_13200 -0.9 -5.5 exoribonuclease R compare
AO353_00900 -0.9 -4.5 2-methylisocitrate lyase compare
AO353_10440 -0.9 -3.3 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO353_11180 -0.9 -7.4 large adhesive protein compare
AO353_28555 -0.8 -1.2 LysR family transcriptional regulator compare
AO353_00185 -0.8 -1.7 phage tail protein compare
AO353_26390 -0.8 -2.0 glyoxalase compare
AO353_01595 -0.8 -1.6 Flp pilus assembly protein CpaB compare
AO353_00105 -0.8 -1.3 hypothetical protein compare
AO353_17290 -0.8 -3.3 multidrug transporter compare
AO353_17175 -0.8 -1.5 beta-ketoadipyl CoA thiolase compare
AO353_12420 -0.8 -2.2 predicted FeS cluster maintenance protein (from data) compare
AO353_01970 -0.8 -5.1 hypothetical protein compare
AO353_05140 -0.8 -3.9 outer membrane lipid asymmetry maintenance protein MlaD compare
AO353_04035 -0.8 -2.6 exclusion suppressor FxsA compare
AO353_24595 -0.8 -1.5 hypothetical protein compare
AO353_16350 -0.8 -2.5 SAM-dependent methyltransferase compare
AO353_09840 -0.8 -3.0 chorismate--pyruvate lyase compare
AO353_24260 -0.8 -1.4 hypothetical protein compare
AO353_02235 -0.8 -3.2 acireductone dioxygenase compare
AO353_24130 -0.8 -1.9 hypothetical protein compare
AO353_07270 -0.8 -2.1 transcriptional regulator compare
AO353_15905 -0.8 -3.6 outer membrane protein assembly factor BamB compare
AO353_06585 -0.8 -3.8 hypothetical protein compare
AO353_26645 -0.8 -1.6 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
AO353_23670 -0.8 -1.9 glutathione S-transferase compare
AO353_08060 -0.8 -2.1 hypothetical protein compare
AO353_02885 -0.8 -1.7 flagellar biosynthesis protein FlgN compare
AO353_20800 -0.8 -1.1 hypothetical protein compare
AO353_21400 -0.8 -1.4 conjugal transfer protein TraR compare
AO353_10055 -0.8 -5.5 DNA helicase II compare
AO353_22475 -0.8 -2.2 alkaline phosphatase compare
AO353_24425 -0.8 -1.9 amino acid ABC transporter permease compare
AO353_08195 -0.8 -2.1 non-canonical purine NTP pyrophosphatase compare
AO353_18700 -0.8 -1.6 flagellar biogenesis protein compare
AO353_08535 -0.8 -4.3 hypothetical protein compare
AO353_13220 -0.8 -3.3 hypothetical protein compare
AO353_23440 -0.8 -1.7 hypothetical protein compare
AO353_15455 -0.8 -5.6 cytochrome o ubiquinol oxidase subunit I compare
AO353_12990 -0.8 -1.9 multidrug DMT transporter conserved
AO353_25405 -0.8 -2.6 molybdenum cofactor biosynthesis protein B compare
AO353_04105 -0.8 -4.0 argininosuccinate synthase compare
AO353_21880 -0.8 -3.4 LuxR family transcriptional regulator compare
AO353_02010 -0.7 -3.3 glycosyl transferase family 1 compare
AO353_26165 -0.7 -2.2 hypothetical protein compare
AO353_08735 -0.7 -4.8 glycine cleavage system protein T compare
AO353_15885 -0.7 -2.9 Cro/Cl family transcriptional regulator compare
AO353_26280 -0.7 -1.6 peptidase M48, Ste24p compare
AO353_15395 -0.7 -2.1 transcriptional regulator compare
AO353_12095 -0.7 -3.8 amino acid ABC transporter substrate-binding protein compare
AO353_09915 -0.7 -3.9 long-chain acyl-CoA thioester hydrolase compare
AO353_19145 -0.7 -2.5 protease HtpX compare


Specific Phenotypes

For 6 genes in this experiment

For stress 1-ethyl-3-methylimidazolium acetate in Pseudomonas fluorescens FW300-N2E3

For stress 1-ethyl-3-methylimidazolium acetate across organisms