Experiment set4IT075 for Vibrio cholerae E7946 ATCC 55056

Compare to:

ICP1_phage_23.5_MOI_rep2

200 most important genes:

  gene name fitness t score description  
CSW01_02755 -5.2 -2.3 glutamyl-tRNA amidotransferase compare
CSW01_06810 -4.6 -1.0 hypothetical protein compare
CSW01_00450 -4.3 -1.9 SCP2 domain-containing protein compare
CSW01_13305 -4.2 -2.3 shikimate kinase compare
CSW01_18350 -4.1 -1.8 cell division protein DedD compare
CSW01_11555 -4.0 -3.9 riboflavin synthase compare
CSW01_11560 -3.8 -3.7 riboflavin biosynthesis protein RibD compare
CSW01_01485 -3.6 -6.0 transcriptional regulator compare
CSW01_09250 -3.5 -1.9 crossover junction endodeoxyribonuclease RuvC compare
CSW01_15425 -3.5 -1.1 DUF3265 domain-containing protein compare
CSW01_12005 -3.4 -4.6 aerobic respiration two-component sensor histidine kinase ArcB compare
CSW01_12365 -3.4 -5.1 inorganic phosphate transporter compare
CSW01_13285 -3.4 -4.6 ribulose-phosphate 3-epimerase compare
CSW01_06380 -3.3 -2.3 GTP cyclohydrolase II compare
CSW01_04820 -3.2 -12.0 serine hydroxymethyltransferase compare
CSW01_18150 -3.1 -1.0 transcription initiation factor TFIIIB compare
CSW01_11730 -3.1 -3.2 2-dehydropantoate 2-reductase compare
CSW01_03215 -2.9 -12.6 ABC transporter ATP-binding protein compare
CSW01_18270 -2.9 -1.9 L-ectoine synthase compare
CSW01_03210 -2.9 -15.0 iron ABC transporter permease compare
CSW01_12320 -2.8 -5.7 3',5'-cyclic-AMP phosphodiesterase compare
CSW01_10740 -2.8 -1.5 peptidase M15 compare
CSW01_11785 -2.8 -1.9 exonuclease V subunit gamma compare
CSW01_03205 -2.7 -9.5 iron ABC transporter substrate-binding protein compare
CSW01_03980 -2.6 -9.4 IMP dehydrogenase compare
CSW01_03410 -2.6 -3.4 polyribonucleotide nucleotidyltransferase compare
CSW01_05265 -2.6 -1.7 methionine--tRNA ligase compare
CSW01_16030 -2.5 -1.6 DUF3709 domain-containing protein compare
CSW01_01875 -2.5 -3.2 hypothetical protein compare
CSW01_18730 -2.5 -1.7 DUF406 domain-containing protein compare
CSW01_12885 -2.4 -8.2 fructose 1,6-bisphosphatase compare
CSW01_13805 -2.3 -6.4 Hsp33 family molecular chaperone HslO compare
CSW01_00015 -2.3 -4.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
CSW01_00560 -2.3 -6.8 DNA polymerase I compare
CSW01_05580 -2.3 -6.4 acetate kinase compare
CSW01_13445 -2.3 -1.5 elongation factor P compare
CSW01_05575 -2.2 -4.5 phosphate acetyltransferase compare
CSW01_10260 -2.2 -2.9 thiol:disulfide interchange protein DsbE compare
CSW01_00095 -2.1 -1.1 hypothetical protein compare
CSW01_13635 -2.1 -9.4 thiol:disulfide interchange protein DsbD compare
CSW01_16590 -2.1 -1.0 N-acetyltransferase compare
CSW01_03055 -2.1 -2.2 cytochrome c1 compare
CSW01_01125 -2.1 -6.8 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
CSW01_09815 -2.1 -3.1 TetR/AcrR family transcriptional regulator compare
CSW01_10270 -2.0 -3.0 cytochrome c-type biogenesis protein CcmE compare
CSW01_14080 -1.9 -0.9 DUF3283 domain-containing protein compare
CSW01_00380 -1.9 -1.1 hypothetical protein compare
CSW01_02875 -1.8 -5.2 DNA recombination/repair protein RecA compare
CSW01_10265 -1.8 -4.9 c-type cytochrome biogenesis protein CcmF compare
CSW01_15680 -1.8 -1.7 DUF3265 domain-containing protein compare
CSW01_02490 -1.8 -6.9 glutathione synthetase compare
CSW01_10285 -1.7 -3.4 heme exporter protein CcmB compare
CSW01_18835 -1.7 -2.6 acyl-CoA thioesterase compare
CSW01_00500 -1.7 -10.3 glycerol-3-phosphate 1-O-acyltransferase compare
CSW01_13450 -1.7 -3.6 EF-P beta-lysylation protein EpmB compare
CSW01_02970 -1.7 -5.4 glutamate--cysteine ligase compare
CSW01_09010 -1.7 -0.9 hypothetical protein compare
CSW01_00460 -1.7 -2.7 twin-arginine translocase subunit TatA compare
CSW01_10565 -1.7 -2.5 hypothetical protein compare
CSW01_00495 -1.7 -1.0 SOS-response transcriptional repressor compare
CSW01_10340 -1.6 -3.2 MinD/ParA family protein compare
CSW01_01490 -1.6 -2.3 Fis family transcriptional regulator compare
CSW01_05730 -1.6 -9.2 inosine/guanosine kinase compare
CSW01_17000 -1.6 -1.1 DUF3332 domain-containing protein compare
CSW01_12255 -1.6 -3.0 flavodoxin FldB compare
CSW01_05065 -1.6 -5.6 N-acetylglucosamine repressor compare
CSW01_05310 -1.5 -3.2 DUF3379 domain-containing protein compare
CSW01_10875 -1.5 -4.9 redox-regulated ATPase YchF compare
CSW01_03785 -1.5 -2.7 phosphate ABC transporter permease compare
CSW01_09525 -1.5 -1.5 DNA translocase FtsK compare
CSW01_17595 -1.5 -0.9 TIGR02808 family protein compare
CSW01_14055 -1.5 -4.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
CSW01_03325 -1.5 -3.2 porin compare
CSW01_00540 -1.5 -1.1 hypothetical protein compare
CSW01_02530 -1.5 -4.3 D-erythrose-4-phosphate dehydrogenase compare
CSW01_13810 -1.5 -5.0 phosphoenolpyruvate carboxykinase (ATP) compare
CSW01_02450 -1.5 -5.7 pyrroline-5-carboxylate reductase compare
CSW01_16325 -1.5 -0.9 hypothetical protein compare
CSW01_19395 -1.5 -0.9 histidine kinase compare
CSW01_15180 -1.5 -1.4 3-keto-L-gulonate-6-phosphate decarboxylase compare
CSW01_05490 -1.5 -5.1 L-threonylcarbamoyladenylate synthase compare
CSW01_15860 -1.4 -1.3 DUF645 domain-containing protein compare
CSW01_06875 -1.4 -3.8 7-cyano-7-deazaguanine synthase QueC compare
CSW01_11215 -1.4 -3.6 flagellar hook assembly protein FlgD compare
CSW01_18635 -1.4 -2.8 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) compare
CSW01_12680 -1.4 -4.8 cytosol aminopeptidase compare
CSW01_03695 -1.4 -3.5 ribosomal large subunit pseudouridine synthase D compare
CSW01_11780 -1.4 -3.4 exodeoxyribonuclease V subunit beta compare
CSW01_01965 -1.4 -2.0 glucose-6-phosphate isomerase compare
CSW01_01820 -1.3 -4.1 N-acetylmuramoyl-L-alanine amidase compare
CSW01_03795 -1.3 -1.4 phosphate ABC transporter ATP-binding protein compare
CSW01_13420 -1.3 -2.0 elongation factor P--(R)-beta-lysine ligase compare
CSW01_11920 -1.3 -4.3 NupC/NupG family nucleoside CNT transporter compare
CSW01_10255 -1.3 -1.1 cytochrome c-type biogenesis protein CcmH compare
CSW01_17885 -1.3 -1.7 hypothetical protein compare
CSW01_10415 -1.3 -3.0 succinate--CoA ligase subunit alpha compare
CSW01_05225 -1.3 -1.8 molybdopterin synthase sulfur carrier subunit compare
CSW01_10280 -1.3 -3.7 heme exporter protein C compare
CSW01_09035 -1.3 -2.2 IclR family transcriptional regulator compare
CSW01_08125 -1.3 -1.6 glutaredoxin family protein compare
CSW01_07085 -1.3 -3.9 carboxypeptidase M32 compare
CSW01_05925 -1.3 -2.8 tryptophan synthase subunit alpha compare
CSW01_06935 -1.3 -1.6 exonuclease compare
CSW01_07145 -1.3 -1.7 spermidine/putrescine ABC transporter substrate-binding protein compare
CSW01_01980 -1.2 -4.4 transcriptional regulator Zur compare
CSW01_03330 -1.2 -1.4 transcription elongation factor GreA compare
CSW01_02890 -1.2 -4.2 aspartate kinase compare
CSW01_18560 -1.2 -0.7 hypothetical protein compare
CSW01_09990 -1.2 -1.4 hypothetical protein compare
CSW01_09620 -1.2 -1.8 trigger factor compare
CSW01_14085 -1.1 -1.7 transcriptional regulator compare
CSW01_19435 -1.1 -1.2 hypothetical protein compare
CSW01_00170 -1.1 -2.6 thiol:disulfide interchange protein DsbA compare
CSW01_17325 -1.1 -3.3 transaldolase compare
CSW01_08390 -1.1 -1.7 hypothetical protein compare
CSW01_02020 -1.1 -1.2 phosphoadenosine phosphosulfate reductase compare
CSW01_09465 -1.1 -3.3 NAD(P)/FAD-dependent oxidoreductase compare
CSW01_07750 -1.1 -0.6 hypothetical protein compare
CSW01_10400 -1.1 -2.0 zinc ABC transporter substrate-binding protein compare
CSW01_17495 -1.1 -3.9 glycerol-3-phosphate dehydrogenase compare
CSW01_04910 -1.1 -1.7 PhoH family protein compare
CSW01_01515 -1.1 -2.0 type II 3-dehydroquinate dehydratase compare
CSW01_09240 -1.1 -2.3 Holliday junction branch migration DNA helicase RuvB compare
CSW01_17750 -1.1 -0.7 cytochrome B compare
CSW01_11535 -1.1 -2.8 thiamine-phosphate kinase compare
CSW01_14455 -1.0 -1.0 hypothetical protein compare
CSW01_00650 -1.0 -4.9 tyrosine recombinase XerC compare
CSW01_05195 -1.0 -3.3 sigma-54-dependent Fis family transcriptional regulator compare
CSW01_10560 -1.0 -2.3 chorismate synthase compare
CSW01_16915 -1.0 -2.4 EAL domain-containing protein compare
CSW01_07150 -1.0 -1.4 spermidine/putrescine ABC transporter permease PotC compare
CSW01_09740 -1.0 -1.7 hypothetical protein compare
CSW01_19190 -1.0 -2.8 DoxX family protein compare
CSW01_12855 -1.0 -3.4 thiamine ABC transporter ATP-binding protein compare
CSW01_17320 -1.0 -1.2 hypothetical protein compare
CSW01_15205 -1.0 -2.6 HTH-type transcriptional regulator UlaR compare
CSW01_03855 -1.0 -2.8 preprotein translocase subunit YajC compare
CSW01_10715 -1.0 -1.4 DUF2919 domain-containing protein compare
CSW01_06395 -1.0 -3.7 iron-regulated protein A compare
CSW01_12735 -1.0 -2.7 RidA family protein compare
CSW01_08660 -1.0 -3.1 PurR family transcriptional regulator compare
CSW01_05240 -1.0 -1.3 CBS domain-containing protein compare
CSW01_10745 -1.0 -1.2 DUF2897 domain-containing protein compare
CSW01_12200 -1.0 -1.5 ribosomal RNA small subunit methyltransferase H compare
CSW01_10605 -1.0 -1.1 flagellar motor switch protein FliN compare
CSW01_07890 -0.9 -1.3 hypothetical protein compare
CSW01_18495 -0.9 -0.9 cytochrome bd-I oxidase subunit CydX compare
CSW01_01015 -0.9 -5.0 DNA helicase II compare
CSW01_16630 -0.9 -0.6 DUF645 domain-containing protein compare
CSW01_05390 -0.9 -1.7 YciK family oxidoreductase compare
CSW01_11125 -0.9 -1.5 hypothetical protein compare
CSW01_18965 -0.9 -2.9 DUF1255 domain-containing protein compare
CSW01_11745 -0.9 -1.8 cysteine desulfurase sulfur acceptor subunit CsdE compare
CSW01_12130 -0.9 -1.2 DUF721 domain-containing protein compare
CSW01_08135 -0.9 -3.3 MFS transporter compare
CSW01_15430 -0.9 -1.1 hypothetical protein compare
CSW01_08620 -0.9 -4.8 chromosome partition protein MukB compare
CSW01_01555 -0.9 -4.7 ATP-dependent RNA helicase RhlB compare
CSW01_06585 -0.9 -1.0 fumarate hydratase compare
CSW01_05800 -0.9 -0.8 ATP-dependent Clp protease adaptor ClpS compare
CSW01_01330 -0.9 -1.0 oxidoreductase compare
CSW01_14965 -0.9 -1.4 hypothetical protein compare
CSW01_11190 -0.9 -3.0 flagellar P-ring protein compare
CSW01_14395 -0.9 -1.5 oxidoreductase compare
CSW01_10020 -0.9 -4.2 ROK family protein compare
CSW01_06400 -0.8 -3.1 DUF1513 domain-containing protein compare
CSW01_01240 -0.8 -3.2 lipopolysaccharide biosynthesis protein compare
CSW01_16205 -0.8 -1.4 DUF3465 domain-containing protein compare
CSW01_12530 -0.8 -3.0 YecA family protein compare
CSW01_06825 -0.8 -0.7 acylphosphatase compare
CSW01_19160 -0.8 -2.0 hypothetical protein compare
CSW01_13155 -0.8 -4.6 ribonuclease R compare
CSW01_16835 -0.8 -2.0 catabolite repressor/activator compare
CSW01_16265 -0.8 -0.9 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_15260 -0.8 -1.9 hypothetical protein compare
CSW01_04150 -0.8 -3.3 RNA methyltransferase compare
CSW01_00080 -0.8 -0.9 hypothetical protein compare
CSW01_05495 -0.8 -2.2 histidine kinase compare
CSW01_02175 -0.8 -3.3 MSHA biogenesis protein MshP compare
CSW01_07215 -0.8 -1.3 cytochrome-c oxidase, cbb3-type subunit III compare
CSW01_03145 -0.8 -0.9 polynucleotide adenylyltransferase PcnB compare
CSW01_04080 -0.8 -1.9 hypothetical protein compare
CSW01_05360 -0.8 -1.6 adenine phosphoribosyltransferase compare
CSW01_15105 -0.8 -1.4 class II glutamine amidotransferase compare
CSW01_07160 -0.8 -2.1 spermidine/putrescine ABC transporter ATP-binding protein compare
CSW01_16455 -0.8 -2.0 DJ-1/PfpI family protein compare
CSW01_18155 -0.8 -1.7 HAD family hydrolase compare
CSW01_08630 -0.8 -1.9 condensin subunit F compare
CSW01_19610 -0.8 -1.8 biliverdin-producing heme oxygenase compare
CSW01_09625 -0.8 -1.0 hypothetical protein compare
CSW01_11220 -0.8 -1.6 flagellar basal body rod protein FlgC compare
CSW01_14680 -0.8 -0.4 aminotransferase compare
CSW01_07135 -0.8 -1.9 chromosome partitioning protein ParA compare
CSW01_12250 -0.8 -2.9 site-specific tyrosine recombinase XerD compare
CSW01_11240 -0.8 -1.4 flagella basal body P-ring formation protein FlgA compare
CSW01_00870 -0.7 -1.0 cytochrome c5 family protein compare
CSW01_04850 -0.7 -1.4 septal ring lytic transglycosylase RlpA compare
CSW01_11255 -0.7 -2.4 flagellar biosynthesis protein FlgP compare
CSW01_17275 -0.7 -0.5 large conductance mechanosensitive channel protein MscL compare
CSW01_16290 -0.7 -0.5 DUF1289 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Vibrio cholerae E7946 ATCC 55056 in phage experiments

For phage ICP1_phage across organisms