Experiment set4IT075 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

2-Deoxy-D-ribonic acid lithium salt 10 mM carbon source

200 most important genes:

  gene name fitness t score description  
H281DRAFT_05621 -4.4 -4.6 glutamate synthase (NADH) small subunit compare
H281DRAFT_06067 -4.4 -16.5 tryptophan synthase, beta chain compare
H281DRAFT_05714 -4.3 -4.5 anthranilate synthase, component II compare
H281DRAFT_02926 -4.3 -13.3 diguanylate cyclase/phosphodiesterase compare
H281DRAFT_06068 -4.3 -9.3 phosphoribosylanthranilate isomerase compare
H281DRAFT_06072 -4.2 -9.2 3-isopropylmalate dehydrogenase compare
H281DRAFT_05713 -4.1 -7.7 anthranilate phosphoribosyltransferase compare
H281DRAFT_00465 -4.1 -4.5 PAS/PAC sensor signal transduction histidine kinase /multi-sensor signal transduction histidine kinase compare
H281DRAFT_00117 -4.1 -6.8 sulfate adenylyltransferase subunit 2 compare
H281DRAFT_02004 -4.0 -6.1 phosphoglycerate mutase compare
H281DRAFT_03925 -3.9 -11.7 chorismate mutase compare
H281DRAFT_04610 -3.9 -19.5 Fe-S oxidoreductase compare
H281DRAFT_04677 -3.8 -11.8 starvation-inducible DNA-binding protein compare
H281DRAFT_02214 -3.8 -18.5 homoserine O-acetyltransferase compare
H281DRAFT_06075 -3.8 -9.6 3-isopropylmalate dehydratase, large subunit compare
H281DRAFT_06073 -3.8 -5.5 3-isopropylmalate dehydratase, small subunit compare
H281DRAFT_05620 -3.7 -19.2 glutamate synthase (NADH) large subunit compare
H281DRAFT_05801 -3.7 -7.7 5,10-methylenetetrahydrofolate reductase (NAD(P)) compare
H281DRAFT_04120 -3.7 -6.7 argininosuccinate synthase compare
H281DRAFT_04679 -3.6 -5.6 pyrroline-5-carboxylate reductase compare
H281DRAFT_02065 -3.5 -2.4 rfaE bifunctional protein, domain II compare
H281DRAFT_00909 -3.5 -3.3 phosphoribosylformylglycinamidine synthase compare
H281DRAFT_00194 -3.4 -2.4 argininosuccinate lyase compare
H281DRAFT_03926 -3.3 -13.5 phosphoserine aminotransferase apoenzyme compare
H281DRAFT_00115 -3.2 -4.6 Uncharacterized conserved protein, DUF934 family compare
H281DRAFT_06060 -3.2 -6.8 amidophosphoribosyltransferase compare
H281DRAFT_00860 -3.2 -3.6 phosphoserine phosphatase compare
H281DRAFT_05712 -3.2 -4.5 indole-3-glycerol phosphate synthase compare
H281DRAFT_06059 -3.2 -9.6 O-succinylhomoserine sulfhydrylase compare
H281DRAFT_04388 -3.2 -2.4 trehalose 6-phosphatase (EC 3.1.3.12) compare
H281DRAFT_05815 -3.1 -9.6 5,10-methenyltetrahydrofolate synthetase compare
H281DRAFT_04119 -3.1 -6.7 ornithine carbamoyltransferase compare
H281DRAFT_04974 -3.0 -7.0 aromatic-amino-acid transaminase compare
H281DRAFT_00894 -3.0 -8.8 glycerate kinase compare
H281DRAFT_05715 -2.9 -15.9 anthranilate synthase, component I compare
H281DRAFT_04495 -2.9 -10.7 3-oxoacid CoA-transferase subunit A compare
H281DRAFT_06315 -2.9 -2.1 glyceraldehyde-3-phosphate dehydrogenase (NAD+) compare
H281DRAFT_04635 -2.9 -2.8 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) compare
H281DRAFT_00114 -2.9 -7.5 sulfite reductase (NADPH) beta subunit compare
H281DRAFT_06264 -2.9 -6.9 glutamate 5-kinase compare
H281DRAFT_00644 -2.8 -8.0 2-deoxy-D-ribonate 3-dehydrogenase (from data) compare
H281DRAFT_00640 -2.7 -6.4 putative regulator of deoxyribonate oxidation (from data) compare
H281DRAFT_00120 -2.7 -4.8 sirohydrochlorin cobaltochelatase compare
H281DRAFT_06065 -2.6 -8.0 tryptophan synthase, alpha chain compare
H281DRAFT_02215 -2.6 -4.4 methionine biosynthesis protein MetW compare
H281DRAFT_00641 -2.6 -7.6 2-deoxy-3-keto-D-ribonate cleavage enzyme (from data) compare
H281DRAFT_04082 -2.6 -6.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
H281DRAFT_01798 -2.5 -3.2 Transmembrane transcriptional regulator (anti-sigma factor RsiW) compare
H281DRAFT_02000 -2.5 -6.6 glycerol-3-phosphate dehydrogenase (NAD(P)+) compare
H281DRAFT_04710 -2.5 -3.8 phosphoribosylformylglycinamidine cyclo-ligase compare
H281DRAFT_00116 -2.3 -1.8 phosphoadenylylsulfate reductase (thioredoxin) compare
H281DRAFT_00395 -2.3 -9.6 hydroxymethylpyrimidine synthase compare
H281DRAFT_00113 -2.2 -4.8 transcriptional regulator, LysR family compare
H281DRAFT_04553 -2.2 -5.4 ketol-acid reductoisomerase compare
H281DRAFT_00118 -2.1 -5.7 sulfate adenylyltransferase subunit 1 compare
H281DRAFT_00197 -2.1 -12.7 Phosphoenolpyruvate carboxylase, type 1 compare
H281DRAFT_02008 -2.0 -7.4 phosphocarrier protein compare
H281DRAFT_00852 -2.0 -4.0 acetyl-CoA acetyltransferase compare
H281DRAFT_00819 -1.9 -2.6 competence protein ComEA compare
H281DRAFT_06027 -1.9 -14.1 AMP nucleosidase compare
H281DRAFT_00854 -1.9 -7.7 polyhydroxyalkanoate synthesis repressor PhaR compare
H281DRAFT_06276 -1.9 -5.7 hypothetical protein compare
H281DRAFT_02201 -1.8 -3.6 hypothetical protein compare
H281DRAFT_06008 -1.8 -8.5 RNA polymerase, sigma 70 subunit, RpoD compare
H281DRAFT_05087 -1.8 -3.7 exodeoxyribonuclease V alpha subunit compare
H281DRAFT_00501 -1.8 -8.4 Carbonic anhydrase or acetyltransferase, isoleucine patch superfamily compare
H281DRAFT_03567 -1.8 -9.0 transcriptional regulator, GntR family compare
H281DRAFT_04719 -1.7 -3.4 TolB protein compare
H281DRAFT_00642 -1.7 -6.4 2-deoxy-D-ribonate transporter (from data) compare
H281DRAFT_02543 -1.7 -4.4 GntR family transcriptional regulator compare
H281DRAFT_00853 -1.7 -2.4 3-oxoacyl-[acyl-carrier-protein] reductase /acetoacetyl-CoA reductase compare
H281DRAFT_05618 -1.7 -11.1 outer membrane protein compare
H281DRAFT_03297 -1.6 -2.2 ADP-ribose pyrophosphatase YjhB, NUDIX family compare
H281DRAFT_00842 -1.6 -5.7 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
H281DRAFT_04302 -1.5 -3.2 molybdopterin adenylyltransferase compare
H281DRAFT_04071 -1.5 -8.2 quinolinate synthetase compare
H281DRAFT_01985 -1.5 -5.6 protoheme IX farnesyltransferase compare
H281DRAFT_01935 -1.4 -5.8 Tetratricopeptide repeat-containing protein compare
H281DRAFT_00051 -1.4 -1.8 hypothetical protein compare
H281DRAFT_04831 -1.4 -3.6 hypothetical protein compare
H281DRAFT_06277 -1.4 -4.2 hypothetical protein compare
H281DRAFT_04871 -1.3 -4.7 urocanate hydratase compare
H281DRAFT_03006 -1.3 -3.9 transcriptional regulator, GntR family compare
H281DRAFT_01509 -1.3 -2.4 Uncharacterized conserved protein YgbK, DUF1537 family compare
H281DRAFT_01986 -1.3 -6.1 cytochrome c oxidase assembly protein subunit 15 compare
H281DRAFT_00841 -1.3 -2.6 hypothetical protein compare
H281DRAFT_05389 -1.3 -1.6 protein of unknown function (DUF3331) compare
H281DRAFT_01993 -1.2 -7.2 cytochrome c oxidase subunit 1 compare
H281DRAFT_05921 -1.2 -3.0 Sugar phosphate permease compare
H281DRAFT_03009 -1.2 -4.0 acetyl coenzyme A synthetase (ADP forming), alpha domain-containing protein compare
H281DRAFT_06048 -1.2 -6.5 starch synthase (maltosyl-transferring) compare
H281DRAFT_04069 -1.2 -9.0 L-aspartate oxidase compare
H281DRAFT_06562 -1.2 -1.9 hypothetical protein compare
H281DRAFT_02670 -1.2 -1.6 transcriptional regulator, GntR family compare
H281DRAFT_02036 -1.2 -3.4 Thiol-disulfide isomerase or thioredoxin compare
H281DRAFT_06023 -1.2 -4.4 hypothetical protein compare
H281DRAFT_04848 -1.1 -2.5 hypothetical protein compare
H281DRAFT_04070 -1.1 -4.1 nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
H281DRAFT_01684 -1.1 -3.6 transcriptional regulator, TetR family compare
H281DRAFT_00286 -1.1 -3.2 transaldolase compare
H281DRAFT_01614 -1.1 -1.6 hypothetical protein compare
H281DRAFT_04904 -1.1 -1.9 outer membrane transport energization protein ExbD compare
H281DRAFT_00471 -1.1 -2.8 transcriptional regulator, IclR family compare
H281DRAFT_06459 -1.1 -1.6 flagellar motor switch protein FliG compare
H281DRAFT_01244 -1.1 -2.6 Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain compare
H281DRAFT_03304 -1.1 -1.9 amidohydrolase, PncC family compare
H281DRAFT_05086 -1.1 -1.4 DNA helicase/exodeoxyribonuclease V, beta subunit compare
H281DRAFT_05437 -1.1 -3.7 Sugar phosphate permease compare
H281DRAFT_03296 -1.0 -1.8 hypothetical protein compare
H281DRAFT_05435 -1.0 -5.6 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_05800 -1.0 -3.1 putative membrane protein compare
H281DRAFT_00851 -1.0 -4.0 polyhydroxyalkanoate synthase compare
H281DRAFT_02959 -1.0 -4.2 putative spermidine/putrescine transport system substrate-binding protein compare
H281DRAFT_06272 -1.0 -1.1 uncharacterized protein compare
H281DRAFT_04236 -1.0 -2.7 Predicted ring-cleavage extradiol dioxygenase compare
H281DRAFT_04707 -1.0 -4.4 HAD-superfamily subfamily IB hydrolase, TIGR01490 compare
H281DRAFT_03072 -1.0 -3.8 Signal transduction histidine kinase compare
H281DRAFT_04896 -1.0 -2.6 transcriptional regulator, AraC family with amidase-like domain compare
H281DRAFT_00671 -1.0 -3.0 hypothetical protein compare
H281DRAFT_05315 -1.0 -1.8 5-dehydro-4-deoxy-D-glucarate aldolase (EC 4.1.2.20) compare
H281DRAFT_04889 -1.0 -1.6 hypothetical protein compare
H281DRAFT_01811 -1.0 -2.1 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_02692 -0.9 -2.3 nudix-type nucleoside diphosphatase, YffH/AdpP family compare
H281DRAFT_03988 -0.9 -7.2 alanyl aminopeptidase. Metallo peptidase. MEROPS family M01 compare
H281DRAFT_01914 -0.9 -3.9 Predicted PurR-regulated permease PerM compare
H281DRAFT_01990 -0.9 -4.6 cytochrome c oxidase subunit 3 compare
H281DRAFT_03306 -0.9 -3.2 Cytochrome c, mono- and diheme variants compare
H281DRAFT_06044 -0.9 -2.9 Protein of unknown function (DUF2384) compare
H281DRAFT_01111 -0.9 -1.7 transcriptional regulator, DeoR family compare
H281DRAFT_04087 -0.9 -1.5 hypothetical protein compare
H281DRAFT_02467 -0.9 -2.6 transcriptional regulator, AraC family with amidase-like domain compare
H281DRAFT_04163 -0.9 -3.1 zinc/manganese transport system ATP-binding protein compare
H281DRAFT_00840 -0.9 -3.6 5'-nucleotidase /3'-nucleotidase /exopolyphosphatase compare
H281DRAFT_05873 -0.9 -1.9 amino acid ABC transporter ATP-binding protein, PAAT family compare
H281DRAFT_00717 -0.9 -1.8 HTH-type transcriptional regulator / antitoxin HigA compare
H281DRAFT_06273 -0.9 -1.8 AmpD protein compare
H281DRAFT_05330 -0.9 -1.8 urea transporter compare
H281DRAFT_05346 -0.9 -2.7 Glutathione S-transferase compare
H281DRAFT_02643 -0.9 -1.4 hypothetical protein compare
H281DRAFT_03915 -0.9 -2.1 UDPglucose 6-dehydrogenase compare
H281DRAFT_06297 -0.9 -1.3 L-arabinose-binding protein compare
H281DRAFT_00643 -0.9 -1.8 3-oxoacyl-[acyl-carrier-protein] reductase compare
H281DRAFT_05852 -0.9 -4.3 transcriptional regulator, TetR family compare
H281DRAFT_02205 -0.9 -0.7 transcriptional regulator, TraR/DksA family compare
H281DRAFT_03292 -0.9 -1.3 Mn-containing catalase compare
H281DRAFT_03752 -0.9 -2.5 transcriptional regulator, IclR family compare
H281DRAFT_02411 -0.9 -3.5 aminomethyltransferase compare
H281DRAFT_00290 -0.9 -1.4 Cytochrome c553 compare
H281DRAFT_04849 -0.9 -1.7 UDP-glucose 4-epimerase compare
H281DRAFT_06022 -0.8 -3.6 DNA polymerase I compare
H281DRAFT_04623 -0.8 -3.6 transcriptional regulator, TetR family compare
H281DRAFT_04189 -0.8 -2.5 pyruvate kinase compare
H281DRAFT_02940 -0.8 -1.6 beta-methylmalyl-CoA/L-malyl-CoA lyase (EC 4.1.3.24) compare
H281DRAFT_03384 -0.8 -1.2 Cytochrome c, mono- and diheme variants compare
H281DRAFT_05953 -0.8 -1.6 Predicted metal-dependent hydrolase, TIM-barrel fold compare
H281DRAFT_00908 -0.8 -2.6 D-amino-acid dehydrogenase compare
H281DRAFT_04279 -0.8 -3.1 transcriptional regulator, RpiR family compare
H281DRAFT_01994 -0.8 -4.7 cytochrome c oxidase subunit 2 compare
H281DRAFT_00940 -0.8 -2.0 psiF repeat-containing protein compare
H281DRAFT_03723 -0.8 -1.6 transcriptional regulator, AraC family with amidase-like domain compare
H281DRAFT_03931 -0.8 -2.9 phosphoglycolate phosphatase compare
H281DRAFT_02067 -0.8 -2.0 hypothetical protein compare
H281DRAFT_05323 -0.8 -1.5 hypothetical protein compare
H281DRAFT_04359 -0.8 -1.2 Glutaredoxin and related proteins compare
H281DRAFT_03528 -0.8 -4.9 ureidoglycolate lyase compare
H281DRAFT_04585 -0.8 -1.9 hypothetical protein compare
H281DRAFT_05876 -0.8 -2.3 transcriptional regulator, TetR family compare
H281DRAFT_00886 -0.8 -2.2 two component transcriptional regulator, winged helix family compare
H281DRAFT_06037 -0.8 -1.7 molybdate transport system substrate-binding protein compare
H281DRAFT_06105 -0.8 -3.3 transcriptional regulator, GntR family compare
H281DRAFT_04075 -0.8 -4.6 formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase compare
H281DRAFT_04722 -0.8 -1.8 Cell division and transport-associated protein TolQ compare
H281DRAFT_02441 -0.8 -1.2 putative ABC transport system ATP-binding protein compare
H281DRAFT_00755 -0.8 -4.3 transcriptional regulator, TetR family compare
H281DRAFT_03917 -0.8 -1.1 Uncharacterized integral membrane protein compare
H281DRAFT_05928 -0.8 -1.8 hypothetical protein compare
H281DRAFT_01443 -0.8 -1.6 RND family efflux transporter, MFP subunit compare
H281DRAFT_06031 -0.8 -3.1 transcriptional regulator, MarR family compare
H281DRAFT_04826 -0.7 -2.2 rhamnosyltransferase compare
H281DRAFT_03448 -0.7 -1.1 Predicted ester cyclase compare
H281DRAFT_04164 -0.7 -2.1 zinc/manganese transport system permease protein compare
H281DRAFT_03615 -0.7 -2.7 hopanoid biosynthesis associated radical SAM protein HpnH compare
H281DRAFT_01347 -0.7 -2.3 transcriptional regulator, TetR family compare
H281DRAFT_05324 -0.7 -1.3 tripartite ATP-independent transporter solute receptor, DctP family compare
H281DRAFT_05814 -0.7 -4.4 Predicted transcription regulator, contains HTH domain, MarR family compare
H281DRAFT_02530 -0.7 -2.7 transcriptional regulator, IclR family compare
H281DRAFT_05298 -0.7 -1.0 amino acid ABC transporter membrane protein 2, PAAT family compare
H281DRAFT_05302 -0.7 -1.1 FAD/FMN-containing dehydrogenase compare
H281DRAFT_06190 -0.7 -0.8 DNA-binding protein H-NS compare
H281DRAFT_03637 -0.7 -2.3 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_03758 -0.7 -3.8 Predicted arabinose efflux permease, MFS family compare
H281DRAFT_03203 -0.7 -1.5 hypothetical protein compare
H281DRAFT_03525 -0.7 -2.0 cold-shock DNA-binding protein family compare
H281DRAFT_02450 -0.7 -2.5 glycine betaine/proline transport system ATP-binding protein compare
H281DRAFT_01187 -0.7 -1.6 short chain enoyl-CoA hydratase (EC 4.2.1.17) compare
H281DRAFT_00779 -0.7 -1.7 sulfate transport system permease protein compare
H281DRAFT_03795 -0.7 -1.7 hypothetical protein compare
H281DRAFT_00461 -0.7 -4.2 oligopeptidase A Metallo peptidase. MEROPS family M03A compare
H281DRAFT_01339 -0.7 -1.8 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
H281DRAFT_06473 -0.7 -1.9 NTE family protein compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source 2-Deoxy-D-ribonic acid lithium salt in Paraburkholderia bryophila 376MFSha3.1

For carbon source 2-Deoxy-D-ribonic acid lithium salt across organisms