Experiment set4IT075 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

2-Deoxy-D-ribonic acid lithium salt 10 mM carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_05561 +2.9 17.8 transcriptional regulator, TetR family compare
H281DRAFT_06120 +1.8 2.4 hypothetical protein compare
H281DRAFT_05920 +1.6 8.5 transcriptional regulator, LacI family compare
H281DRAFT_02683 +1.5 1.7 xanthine dehydrogenase accessory factor compare
H281DRAFT_02791 +1.5 2.7 apolipoprotein D and lipocalin family protein compare
H281DRAFT_01184 +1.5 2.0 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_03460 +1.4 2.0 Protein of unknown function (DUF2950) compare
H281DRAFT_01390 +1.3 2.4 hypothetical protein compare
H281DRAFT_01441 +1.3 2.2 two component heavy metal response transcriptional regulator, winged helix family compare
H281DRAFT_05778 +1.2 2.5 flagellar motor switch protein FliN/FliY compare
H281DRAFT_05214 +1.1 2.5 transcriptional regulator, LacI family compare
H281DRAFT_01436 +1.1 2.2 NTE family protein compare
H281DRAFT_04805 +1.1 3.6 methyltransferase, FkbM family compare
H281DRAFT_03440 +1.1 1.9 PAP2 superfamily protein compare
H281DRAFT_06285 +1.1 2.7 3-dehydroquinate dehydratase compare
H281DRAFT_03023 +1.1 1.5 Protein of unknown function (DUF2866) compare
H281DRAFT_05705 +1.0 1.8 hypothetical protein compare
H281DRAFT_05753 +1.0 5.8 flagellar biosynthesis protein FlhA compare
H281DRAFT_00658 +1.0 2.4 transcriptional regulator, IclR family compare
H281DRAFT_02818 +1.0 2.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_01689 +1.0 1.9 transcriptional regulator, AraC family with amidase-like domain compare
H281DRAFT_00998 +0.9 0.8 outer membrane protein, multidrug efflux system compare
H281DRAFT_02508 +0.9 1.4 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_02813 +0.9 1.8 Uncharacterized protein conserved in bacteria compare
H281DRAFT_01011 +0.9 1.6 Uncharacterized membrane protein YkgB compare
H281DRAFT_00326 +0.9 1.6 pyrroloquinoline quinone biosynthesis protein D compare
H281DRAFT_04958 +0.9 2.3 glutamate racemase compare
H281DRAFT_00102 +0.9 2.4 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
H281DRAFT_00066 +0.9 2.4 hypothetical protein compare
H281DRAFT_00386 +0.9 1.9 hypothetical protein compare
H281DRAFT_02503 +0.8 2.8 Peroxiredoxin compare
H281DRAFT_01889 +0.8 2.5 7-cyano-7-deazaguanine reductase compare
H281DRAFT_02753 +0.8 1.9 Predicted dehydrogenase compare
H281DRAFT_00722 +0.8 1.4 transcriptional regulator, Crp/Fnr family compare
H281DRAFT_02581 +0.8 1.1 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_04759 +0.8 1.1 hypothetical protein compare
H281DRAFT_05766 +0.8 1.7 flagellar basal-body rod protein FlgF compare
H281DRAFT_03502 +0.8 1.8 2-aminoethylphosphonate transport system permease protein compare
H281DRAFT_01310 +0.8 2.6 ribulose-5-phosphate 3-epimerase (EC 5.1.3.1) compare
H281DRAFT_01042 +0.8 2.1 glycosyltransferase, MSMEG_0565 family compare
H281DRAFT_00731 +0.8 1.4 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_06135 +0.8 1.4 hypothetical protein compare
H281DRAFT_02864 +0.8 2.4 precorrin-8X methylmutase compare
H281DRAFT_01599 +0.8 1.5 GTP cyclohydrolase I compare
H281DRAFT_06419 +0.8 1.2 putative toxin-antitoxin system antitoxin component, TIGR02293 family compare
H281DRAFT_01766 +0.8 0.9 cytochrome c oxidase subunit 2 compare
H281DRAFT_06511 +0.8 1.1 reactive intermediate/imine deaminase compare
H281DRAFT_05122 +0.8 2.7 host factor-I protein compare
H281DRAFT_06510 +0.8 2.7 methyl-accepting chemotaxis protein compare
H281DRAFT_00088 +0.7 2.1 amino acid ABC transporter substrate-binding protein, PAAT family compare
H281DRAFT_05754 +0.7 3.8 flagellar biosynthesis protein FlhF compare
H281DRAFT_01403 +0.7 2.5 hypothetical protein compare
H281DRAFT_01047 +0.7 1.5 GTP cyclohydrolase II compare
H281DRAFT_00946 +0.7 2.0 protein-tyrosine phosphatase compare
H281DRAFT_02224 +0.7 1.6 rod shape-determining protein MreC compare
H281DRAFT_01457 +0.7 2.5 hypothetical protein compare
H281DRAFT_01025 +0.7 1.0 transcriptional regulator, MarR family compare
H281DRAFT_04996 +0.7 1.4 type III secretion protein C compare
H281DRAFT_05289 +0.7 1.9 N-hydroxyarylamine O-acetyltransferase compare
H281DRAFT_05914 +0.7 1.8 hypothetical protein compare
H281DRAFT_05764 +0.7 2.8 flagellar basal-body rod modification protein FlgD compare
H281DRAFT_04857 +0.7 1.2 hypothetical protein compare
H281DRAFT_05779 +0.7 4.7 flagellar motor switch protein FliM compare
H281DRAFT_05756 +0.7 2.4 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG compare
H281DRAFT_00244 +0.7 4.6 trehalose 6-phosphate synthase compare
H281DRAFT_01285 +0.7 3.1 ATP adenylyltransferase compare
H281DRAFT_05770 +0.7 3.9 flagellar protein FlgJ compare
H281DRAFT_05903 +0.7 1.3 osmotically inducible protein OsmC compare
H281DRAFT_06253 +0.7 3.9 cell division protein ZapD compare
H281DRAFT_00728 +0.7 2.3 Predicted N-acyltransferase, GNAT family compare
H281DRAFT_01782 +0.7 2.4 Predicted arabinose efflux permease, MFS family compare
H281DRAFT_01331 +0.7 2.5 pyrroloquinoline-quinone synthase compare
H281DRAFT_02736 +0.7 1.4 uncharacterized peroxidase-related enzyme compare
H281DRAFT_03061 +0.7 2.3 hypothetical protein compare
H281DRAFT_00757 +0.7 0.9 hypothetical protein compare
H281DRAFT_00323 +0.7 2.6 GAF domain-containing protein compare
H281DRAFT_00285 +0.6 2.0 PhnB protein compare
H281DRAFT_06018 +0.6 4.8 choline monooxygenase compare
H281DRAFT_04270 +0.6 4.0 L-glutamate-binding protein /L-aspartate-binding protein compare
H281DRAFT_02170 +0.6 1.5 Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family compare
H281DRAFT_05966 +0.6 1.6 transcriptional regulator, LysR family compare
H281DRAFT_06509 +0.6 1.2 hypothetical protein compare
H281DRAFT_05775 +0.6 2.8 flagellar biosynthetic protein FliQ compare
H281DRAFT_06529 +0.6 2.4 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
H281DRAFT_01183 +0.6 0.9 Sugar lactone lactonase YvrE compare
H281DRAFT_01305 +0.6 1.9 hypothetical protein compare
H281DRAFT_06238 +0.6 1.0 hypothetical protein compare
H281DRAFT_00837 +0.6 2.5 NitT/TauT family transport system ATP-binding protein compare
H281DRAFT_06474 +0.6 1.3 amino acid ABC transporter membrane protein 1, PAAT family compare
H281DRAFT_00719 +0.6 2.2 polysaccharide export outer membrane protein compare
H281DRAFT_01201 +0.6 1.8 3-hydroxyisobutyrate dehydrogenase compare
H281DRAFT_05438 +0.6 1.1 transcriptional regulator, IclR family compare
H281DRAFT_04715 +0.6 1.8 hypothetical protein compare
H281DRAFT_00140 +0.6 2.9 cobalamin-5'-phosphate synthase compare
H281DRAFT_05744 +0.6 1.8 methyl-accepting chemotaxis sensory transducer with TarH sensor compare
H281DRAFT_03315 +0.6 1.3 HSP20 family protein compare
H281DRAFT_03837 +0.6 1.3 hypothetical protein compare
H281DRAFT_05695 +0.6 1.6 hypothetical protein compare
H281DRAFT_03147 +0.6 1.0 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA compare
H281DRAFT_01812 +0.6 1.5 Short-chain dehydrogenase compare
H281DRAFT_00240 +0.6 4.2 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_03700 +0.6 2.8 acyl-CoA dehydrogenase compare
H281DRAFT_00504 +0.6 2.4 hypothetical protein compare
H281DRAFT_01101 +0.6 0.9 Small-conductance mechanosensitive channel compare
H281DRAFT_01174 +0.6 2.3 Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase) compare
H281DRAFT_02950 +0.6 1.1 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_05752 +0.6 4.0 flagellar biosynthetic protein FlhB compare
H281DRAFT_04228 +0.6 3.1 homodimeric glycerol 3-phosphate dehydrogenase (quinone) compare
H281DRAFT_05601 +0.6 0.7 hypothetical protein compare
H281DRAFT_01061 +0.6 1.1 hypothetical protein compare
H281DRAFT_04391 +0.6 4.6 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_05698 +0.6 1.9 protein of unknown function (DUF748) compare
H281DRAFT_02548 +0.6 0.9 Uncharacterized membrane protein YoaK, UPF0700 family compare
H281DRAFT_05399 +0.6 1.5 isoquinoline 1-oxidoreductase, alpha subunit compare
H281DRAFT_01519 +0.6 1.6 fructuronate reductase compare
H281DRAFT_01033 +0.6 0.9 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_01854 +0.6 2.3 isoamylase compare
H281DRAFT_00487 +0.6 0.6 bacterial peptide chain release factor 2 (bRF-2) compare
H281DRAFT_04492 +0.6 3.3 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_01927 +0.6 4.7 RNA polymerase, sigma 54 subunit, RpoN/SigL compare
H281DRAFT_06025 +0.6 2.3 chromate transporter compare
H281DRAFT_03293 +0.6 1.0 Ferritin-like metal-binding protein YciE compare
H281DRAFT_01731 +0.6 3.1 protein of unknown function (DUF4148) compare
H281DRAFT_00972 +0.6 1.4 lactaldehyde dehydrogenase / glycolaldehyde dehydrogenase compare
H281DRAFT_00654 +0.6 1.3 putative spermidine/putrescine transport system substrate-binding protein compare
H281DRAFT_06164 +0.6 2.5 protein of unknown function (DUF4400) compare
H281DRAFT_05774 +0.6 1.8 flagellar biosynthetic protein FliR compare
H281DRAFT_00074 +0.6 1.7 UDP-galactose 4-epimerase compare
H281DRAFT_05372 +0.6 3.3 type VI secretion system protein ImpM compare
H281DRAFT_03728 +0.6 1.2 Uncharacterized conserved protein, DUF1697 family compare
H281DRAFT_05403 +0.6 1.1 amino acid ABC transporter membrane protein 1, PAAT family compare
H281DRAFT_00255 +0.6 1.3 hypothetical protein compare
H281DRAFT_05609 +0.5 0.9 penicillin-binding protein 1A compare
H281DRAFT_06578 +0.5 2.5 NADP-dependent 3-hydroxy acid dehydrogenase YdfG compare
H281DRAFT_03050 +0.5 1.4 Mannose-6-phosphate isomerase, cupin superfamily compare
H281DRAFT_00287 +0.5 2.2 benzoate membrane transport protein compare
H281DRAFT_04993 +0.5 1.3 hypothetical protein compare
H281DRAFT_01160 +0.5 1.7 transcriptional regulator, IclR family compare
H281DRAFT_01151 +0.5 1.8 ceramide glucosyltransferase compare
H281DRAFT_02611 +0.5 1.7 transcriptional regulator, RpiR family compare
H281DRAFT_05376 +0.5 1.4 hypothetical protein compare
H281DRAFT_03849 +0.5 1.3 protein of unknown function (DUF4863) compare
H281DRAFT_05545 +0.5 0.9 NitT/TauT family transport system ATP-binding protein compare
H281DRAFT_04002 +0.5 1.2 tRNA_Arg_ACG compare
H281DRAFT_01477 +0.5 1.5 protein CcmA, bactofilin family compare
H281DRAFT_04876 +0.5 1.5 hypothetical protein compare
H281DRAFT_06577 +0.5 3.2 hypothetical protein compare
H281DRAFT_06197 +0.5 1.4 hypothetical protein compare
H281DRAFT_00091 +0.5 2.0 urea transport system ATP-binding protein compare
H281DRAFT_00927 +0.5 2.5 UPF0755 protein compare
H281DRAFT_03565 +0.5 2.8 Sugar phosphate permease compare
H281DRAFT_06405 +0.5 1.7 beta-lactamase class A compare
H281DRAFT_02922 +0.5 1.0 transcriptional regulator, AraC family compare
H281DRAFT_01093 +0.5 2.3 transcriptional regulator, winged helix family compare
H281DRAFT_02326 +0.5 2.2 histidine triad (HIT) family protein compare
H281DRAFT_01102 +0.5 2.3 hypothetical protein compare
H281DRAFT_05540 +0.5 1.6 transcriptional regulator, LacI family compare
H281DRAFT_00648 +0.5 1.6 Uncharacterized conserved protein YgbK, DUF1537 family compare
H281DRAFT_04229 +0.5 3.2 glycerol kinase compare
H281DRAFT_03774 +0.5 2.1 Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain compare
H281DRAFT_04544 +0.5 1.5 diacylglycerol kinase (ATP) compare
H281DRAFT_05767 +0.5 1.9 flagellar basal-body rod protein FlgG compare
H281DRAFT_06268 +0.5 2.5 Small neutral amino acid transporter SnatA, MarC family compare
H281DRAFT_02966 +0.5 1.2 nucleoside-binding protein compare
H281DRAFT_02566 +0.5 1.2 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_04728 +0.5 2.2 type IV fimbrial biogenesis protein FimT compare
H281DRAFT_01413 +0.5 0.8 hypothetical protein compare
H281DRAFT_00812 +0.5 1.1 molybdopterin molybdotransferase compare
H281DRAFT_01190 +0.5 1.8 NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase compare
H281DRAFT_00561 +0.5 2.5 microcin C transport system permease protein compare
H281DRAFT_05217 +0.5 2.3 PGDYG protein compare
H281DRAFT_04751 +0.5 3.8 Predicted arabinose efflux permease, MFS family compare
H281DRAFT_05345 +0.5 1.1 Fur family transcriptional regulator, zinc uptake regulator compare
H281DRAFT_02375 +0.5 1.4 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family compare
H281DRAFT_01262 +0.5 1.1 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_05785 +0.5 2.5 flagellar motor switch protein FliG compare
H281DRAFT_06308 +0.5 1.2 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) compare
H281DRAFT_06069 +0.5 1.9 tRNA pseudouridine38-40 synthase compare
H281DRAFT_01238 +0.5 1.7 FMN reductase compare
H281DRAFT_04218 +0.5 1.0 hypothetical protein compare
H281DRAFT_01848 +0.5 1.1 hypothetical protein compare
H281DRAFT_01905 +0.5 1.7 hypothetical protein compare
H281DRAFT_01112 +0.5 2.2 deoxynucleoside transporter, permease component 2 (from data) compare
H281DRAFT_02701 +0.5 0.9 dihydroxyacetone kinase, C-terminal domain compare
H281DRAFT_03097 +0.5 1.2 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
H281DRAFT_04929 +0.5 0.9 hypothetical protein compare
H281DRAFT_02702 +0.5 0.8 dihydroxyacetone kinase DhaK subunit compare
H281DRAFT_00695 +0.5 1.4 choline-sulfatase compare
H281DRAFT_05098 +0.5 0.8 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_01311 +0.5 1.0 fructose-bisphosphate aldolase compare
H281DRAFT_02685 +0.5 1.6 Uncharacterized damage-inducible protein DinB (forms a four-helix bundle) compare
H281DRAFT_02618 +0.5 1.6 transcriptional regulator, LysR family compare
H281DRAFT_02952 +0.5 1.0 fructuronate reductase compare
H281DRAFT_03199 +0.5 2.4 flagellar transcriptional activator FlhD compare
H281DRAFT_01881 +0.5 1.3 two-component system, LuxR family, sensor kinase FixL compare
H281DRAFT_00470 +0.5 2.9 murein-DD-endopeptidase. Serine peptidase. MEROPS family S11 compare
H281DRAFT_00875 +0.5 1.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_03234 +0.5 1.9 chemotaxis protein MotA compare
H281DRAFT_00666 +0.5 2.5 altronate hydrolase compare
H281DRAFT_04431 +0.5 2.0 Membrane-bound metallopeptidase compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source 2-Deoxy-D-ribonic acid lithium salt in Paraburkholderia bryophila 376MFSha3.1

For carbon source 2-Deoxy-D-ribonic acid lithium salt across organisms