Experiment set4IT074 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with 1-ethyl-3-methylimidazolium lysine 10.5 mM

200 most important genes:

  gene name fitness t score description  
AO353_22685 -3.7 -3.6 peroxidase compare
AO353_12995 -3.2 -5.2 LysR family transcriptional regulator compare
AO353_03580 -3.1 -2.1 ATP-dependent DNA helicase RuvB compare
AO353_12500 -2.9 -2.0 shikimate kinase compare
AO353_09315 -2.9 -10.8 LysR family transcriptional regulator compare
AO353_11750 -2.8 -1.9 ATPase compare
AO353_06460 -2.8 -7.3 hypothetical protein compare
AO353_12990 -2.8 -4.2 multidrug DMT transporter compare
AO353_13130 -2.7 -4.0 N-acetylmuramoyl-L-alanine amidase compare
AO353_06455 -2.7 -3.1 D-alanyl-D-alanine carboxypeptidase compare
AO353_01410 -2.6 -3.5 ribonuclease E compare
AO353_12115 -2.6 -3.0 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_09040 -2.6 -2.9 diaminopimelate epimerase compare
AO353_15250 -2.5 -3.4 cytochrome B compare
AO353_04190 -2.5 -2.4 glycerol-3-phosphate dehydrogenase compare
AO353_13160 -2.5 -1.7 membrane protease HflC compare
AO353_12090 -2.5 -3.5 imidazole glycerol phosphate synthase subunit HisF compare
AO353_05240 -2.4 -2.9 rod shape-determining protein MreD compare
AO353_01975 -2.4 -6.7 glycosyl transferase compare
AO353_18555 -2.4 -12.6 aromatic amino acid transporter compare
AO353_02010 -2.3 -6.7 glycosyl transferase family 1 compare
AO353_12940 -2.3 -7.3 glycosyl transferase compare
AO353_02945 -2.2 -7.4 magnesium transporter compare
AO353_02660 -2.2 -5.1 peptidase P60 compare
AO353_07140 -2.2 -15.1 peptidase M23 compare
AO353_10930 -2.1 -7.3 DNA polymerase I compare
AO353_21630 -2.1 -3.1 precorrin-4 C11-methyltransferase compare
AO353_13155 -2.1 -3.5 hypothetical protein compare
AO353_11730 -2.1 -8.3 glutamate--cysteine ligase compare
AO353_00825 -2.1 -3.9 porin compare
AO353_05690 -2.0 -3.5 SsrA-binding protein compare
AO353_03520 -2.0 -3.5 hypothetical protein compare
AO353_09835 -2.0 -3.7 rubredoxin compare
AO353_01690 -1.9 -6.2 hypothetical protein conserved
AO353_07520 -1.9 -11.1 8-amino-7-oxononanoate synthase compare
AO353_07445 -1.9 -1.9 pyrroloquinoline quinone biosynthesis protein PqqD compare
AO353_03590 -1.9 -3.9 crossover junction endodeoxyribonuclease RuvC compare
AO353_02710 -1.9 -9.8 (p)ppGpp synthetase compare
AO353_20200 -1.9 -3.8 peptidylprolyl isomerase compare
AO353_08980 -1.9 -3.0 heme biosynthesis operon protein HemX compare
AO353_19365 -1.9 -8.1 thiol:disulfide interchange protein compare
AO353_01985 -1.8 -8.7 hypothetical protein compare
AO353_05130 -1.8 -2.0 anti-anti-sigma factor compare
AO353_20170 -1.8 -4.8 trigger factor compare
AO353_00635 -1.8 -3.5 hypothetical protein compare
AO353_02975 -1.8 -3.8 aspartate kinase compare
AO353_07525 -1.8 -10.9 biotin synthase compare
AO353_14400 -1.8 -3.8 Fis family transcriptional regulator compare
AO353_02810 -1.8 -7.2 histidine kinase compare
AO353_08350 -1.7 -6.4 hypothetical protein compare
AO353_08045 -1.7 -11.2 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_09250 -1.7 -2.8 exodeoxyribonuclease III compare
AO353_02250 -1.7 -2.6 chorismate synthase compare
AO353_07505 -1.7 -7.4 dethiobiotin synthetase compare
AO353_20565 -1.7 -2.1 tRNA-Ala compare
AO353_16810 -1.7 -3.5 recombinase RecX compare
AO353_01995 -1.7 -9.9 hypothetical protein compare
AO353_23945 -1.6 -2.9 hypothetical protein compare
AO353_04565 -1.6 -4.9 nucleoid-associated protein compare
AO353_12935 -1.6 -3.4 glycosyltransferase compare
AO353_08115 -1.6 -5.2 energy transducer TonB compare
AO353_18540 -1.6 -2.7 pseudouridine synthase compare
AO353_12950 -1.6 -6.8 polymerase compare
AO353_27650 -1.6 -3.8 cell division protein FtsK compare
AO353_06850 -1.6 -4.3 MFS transporter compare
AO353_03585 -1.5 -2.9 ATP-dependent DNA helicase RuvA compare
AO353_08775 -1.5 -2.4 cell division protein ZapA compare
AO353_02465 -1.5 -2.0 hypothetical protein compare
AO353_06585 -1.5 -5.9 hypothetical protein compare
AO353_07510 -1.5 -7.6 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_09135 -1.5 -2.2 cytochrome C compare
AO353_13140 -1.5 -4.1 tRNA dimethylallyltransferase compare
AO353_19360 -1.5 -2.5 peroxiredoxin compare
AO353_03615 -1.5 -2.9 cold-shock protein compare
AO353_20185 -1.5 -5.2 DNA-binding protein compare
AO353_00510 -1.5 -5.0 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_16805 -1.5 -4.8 recombinase RecA compare
AO353_06045 -1.5 -5.7 exodeoxyribonuclease V subunit beta compare
AO353_10725 -1.5 -1.4 dodecin flavoprotein compare
AO353_26390 -1.5 -2.1 glyoxalase compare
AO353_00605 -1.4 -5.2 cytochrome C oxidase Cbb3 compare
AO353_06050 -1.4 -5.1 exodeoxyribonuclease V subunit gamma compare
AO353_10945 -1.4 -2.8 cytochrome C compare
AO353_02025 -1.4 -7.3 mannose-1-phosphate guanyltransferase compare
AO353_09320 -1.4 -7.1 ATP-dependent DNA helicase RecG compare
AO353_14595 -1.4 -7.2 carbonate dehydratase compare
AO353_07315 -1.4 -2.6 rRNA methyltransferase compare
AO353_06040 -1.4 -3.2 exodeoxyribonuclease V subunit alpha compare
AO353_09240 -1.4 -2.6 acetylglutamate kinase compare
AO353_16940 -1.4 -4.7 deoxycytidine triphosphate deaminase compare
AO353_01990 -1.4 -5.3 UDP-N-acetylglucosamine 2-epimerase compare
AO353_23860 -1.4 -3.2 xanthine permease XanP compare
AO353_26845 -1.4 -7.4 acriflavine resistance protein B compare
AO353_08975 -1.4 -5.1 heme biosynthesis protein HemY compare
AO353_03815 -1.4 -2.0 heme utilization protein compare
AO353_08510 -1.4 -4.3 3-phosphoglycerate dehydrogenase compare
AO353_01970 -1.4 -7.5 hypothetical protein compare
AO353_14420 -1.4 -3.1 molecular chaperone DnaK compare
AO353_17370 -1.4 -4.9 phospholipase compare
AO353_20865 -1.3 -2.1 cold-shock protein compare
AO353_09285 -1.3 -7.8 reactive intermediate/imine deaminase compare
AO353_20095 -1.3 -3.6 histidine kinase compare
AO353_05225 -1.3 -9.6 hypothetical protein compare
AO353_01805 -1.3 -5.2 hypothetical protein compare
AO353_04365 -1.3 -4.2 recombinase XerD compare
AO353_11940 -1.3 -2.5 hypothetical protein compare
AO353_17885 -1.3 -1.6 hypothetical protein compare
AO353_19250 -1.3 -1.7 molybdenum cofactor guanylyltransferase compare
AO353_23790 -1.3 -2.7 metal-binding protein compare
AO353_17035 -1.3 -4.5 hypothetical protein compare
AO353_13580 -1.3 -3.4 copper resistance protein CopZ compare
AO353_02020 -1.3 -3.8 hypothetical protein compare
AO353_10445 -1.3 -1.8 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_28080 -1.3 -3.0 hypothetical protein compare
AO353_12365 -1.2 -3.3 phosphoribosyl-AMP cyclohydrolase compare
AO353_15905 -1.2 -4.9 outer membrane protein assembly factor BamB compare
AO353_00620 -1.2 -2.0 cytochrome C oxidase Cbb3 compare
AO353_09030 -1.2 -1.3 iron donor protein CyaY compare
AO353_00610 -1.2 -1.7 cytochrome C oxidase Cbb3 compare
AO353_06810 -1.2 -3.8 phage shock protein A compare
AO353_16025 -1.2 -3.3 hypothetical protein compare
AO353_00460 -1.2 -2.6 TetR family transcriptional regulator compare
AO353_04175 -1.2 -3.9 glycerol uptake facilitator GlpF compare
AO353_04355 -1.2 -1.8 homoserine dehydrogenase compare
AO353_08170 -1.2 -3.6 hypothetical protein compare
AO353_23495 -1.2 -2.0 SAM-dependent methyltransferase compare
AO353_24275 -1.2 -2.0 transcriptional regulator compare
AO353_24425 -1.2 -2.6 amino acid ABC transporter permease compare
AO353_14590 -1.2 -1.0 serine kinase/phosphatase compare
AO353_07155 -1.2 -4.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_15900 -1.2 -2.0 GTP-binding protein compare
AO353_13070 -1.2 -5.7 phosphoserine phosphatase compare
AO353_06355 -1.2 -3.0 thiamine-phosphate pyrophosphorylase compare
AO353_29280 -1.2 -2.9 hypothetical protein compare
AO353_08110 -1.2 -4.1 glutathione synthetase compare
AO353_13715 -1.2 -3.3 translation initiation factor Sui1 compare
AO353_07075 -1.2 -3.8 elongation factor Tu compare
AO353_11525 -1.1 -5.7 aminotransferase compare
AO353_17290 -1.1 -4.1 multidrug transporter compare
AO353_07645 -1.1 -1.4 sarcosine oxidase subunit gamma compare
AO353_15185 -1.1 -3.4 ATPase compare
AO353_06430 -1.1 -6.4 murein transglycosylase compare
AO353_20175 -1.1 -2.5 ATP-dependent Clp protease proteolytic subunit compare
AO353_05145 -1.1 -4.1 ABC transporter permease compare
AO353_04240 -1.1 -1.4 chemotaxis protein CheW compare
AO353_13940 -1.1 -4.8 cytochrome D ubiquinol oxidase subunit I compare
AO353_09050 -1.1 -3.0 recombinase XerC compare
AO353_27925 -1.1 -2.2 hypothetical protein compare
AO353_13200 -1.1 -6.5 exoribonuclease R compare
AO353_18890 -1.1 -3.6 cytochrome C compare
AO353_03595 -1.1 -3.0 hypothetical protein compare
AO353_16530 -1.1 -1.6 ribonuclease HII compare
AO353_05550 -1.1 -4.3 pseudouridine synthase compare
AO353_03795 -1.1 -2.8 fumarate hydratase compare
AO353_08215 -1.1 -2.9 thiazole synthase compare
AO353_12105 -1.1 -4.4 peptidase S41 compare
AO353_13945 -1.1 -3.9 ubiquinol oxidase subunit II compare
AO353_18960 -1.1 -2.0 terminase compare
AO353_27995 -1.1 -3.3 RpiR family transcriptional regulator compare
AO353_06415 -1.0 -2.7 hypothetical protein compare
AO353_14740 -1.0 -2.5 GTP-binding protein compare
AO353_04500 -1.0 -2.0 DNA repair protein RecO compare
AO353_17165 -1.0 -2.3 ATP-dependent helicase compare
AO353_15270 -1.0 -3.3 phospholipid-binding protein compare
AO353_02885 -1.0 -1.9 flagellar biosynthesis protein FlgN compare
AO353_15725 -1.0 -3.0 hypothetical protein compare
AO353_06540 -1.0 -1.8 hypothetical protein compare
AO353_13640 -1.0 -2.7 histidine kinase compare
AO353_07210 -1.0 -3.7 indole-3-glycerol-phosphate synthase compare
AO353_05150 -1.0 -3.2 ABC transporter ATP-binding protein compare
AO353_14795 -1.0 -3.5 molybdopterin-synthase adenylyltransferase compare
AO353_27720 -1.0 -3.2 cupin compare
AO353_14940 -1.0 -2.3 malate:quinone oxidoreductase compare
AO353_08015 -1.0 -4.6 5,10-methylenetetrahydrofolate reductase compare
AO353_13225 -1.0 -2.3 50S ribosomal protein L9 compare
AO353_10455 -1.0 -1.1 tRNA modification GTPase MnmE compare
AO353_29145 -1.0 -2.6 HxlR family transcriptional regulator compare
AO353_09235 -1.0 -4.6 phosphoglucomutase compare
AO353_13100 -1.0 -1.5 GTPase RsgA compare
AO353_10055 -1.0 -6.4 DNA helicase II compare
AO353_09865 -1.0 -6.2 hypothetical protein compare
AO353_05020 -1.0 -5.6 cysteine biosynthesis protein CysZ compare
AO353_01880 -1.0 -4.7 beta (1-6) glucans synthase compare
AO353_26830 -1.0 -2.7 histidine kinase compare
AO353_09000 -1.0 -3.4 argininosuccinate lyase compare
AO353_22200 -1.0 -3.1 metal-binding protein compare
AO353_08100 -1.0 -2.5 chemotaxis protein CheY compare
AO353_16070 -1.0 -2.8 PadR family transcriptional regulator compare
AO353_18135 -0.9 -1.8 hypothetical protein compare
AO353_19090 -0.9 -1.5 MarR family transcriptional regulator compare
AO353_00505 -0.9 -2.6 3-ketoacyl-CoA thiolase compare
AO353_14220 -0.9 -1.0 ribosomal large subunit pseudouridine synthase D compare
AO353_08645 -0.9 -1.4 transporter compare
AO353_02690 -0.9 -5.2 dehydrogenase compare
AO353_22800 -0.9 -1.9 sulfite reductase compare
AO353_08880 -0.9 -1.7 exopolyphosphatase compare
AO353_11915 -0.9 -4.4 agmatine deiminase compare
AO353_10670 -0.9 -3.5 shikimate dehydrogenase compare
AO353_12110 -0.9 -4.8 peptidase M23 compare
AO353_09945 -0.9 -2.8 LysR family transcriptional regulator compare


Specific Phenotypes

For 6 genes in this experiment

For stress 1-ethyl-3-methylimidazolium lysine in Pseudomonas fluorescens FW300-N2E3

For stress 1-ethyl-3-methylimidazolium lysine across organisms