Experiment set4IT074 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with 1-ethyl-3-methylimidazolium lysine 10.5 mM

200 most detrimental genes:

  gene name fitness t score description  
AO353_02395 +2.5 20.8 mechanosensitive ion channel protein compare
AO353_21455 +2.0 3.6 cation:proton antiporter compare
AO353_01315 +1.4 7.4 TetR family transcriptional regulator compare
AO353_08465 +1.4 12.1 phosphoenolpyruvate-protein phosphotransferase compare
AO353_10780 +1.4 2.1 DNA-binding protein compare
AO353_09060 +1.3 3.9 hypothetical protein compare
AO353_03005 +1.3 5.9 succinylarginine dihydrolase compare
AO353_06725 +1.3 2.4 hypothetical protein compare
AO353_27855 +1.3 2.5 MarR family transcriptional regulator compare
AO353_07875 +1.2 3.6 hypothetical protein compare
AO353_27415 +1.1 2.8 hypothetical protein compare
AO353_28930 +1.0 2.7 hypothetical protein compare
AO353_09860 +1.0 7.4 histidine kinase compare
AO353_10730 +1.0 1.7 hypothetical protein compare
AO353_03430 +1.0 3.2 methylglyoxal synthase compare
AO353_22870 +1.0 3.0 oxidoreductase compare
AO353_19085 +1.0 2.6 organic hydroperoxide resistance protein compare
AO353_26550 +1.0 2.3 hypothetical protein compare
AO353_25335 +1.0 1.4 malonate decarboxylase acyl carrier protein compare
AO353_19750 +0.9 2.2 diaminopimelate epimerase compare
AO353_23910 +0.9 1.8 response regulator compare
AO353_00170 +0.9 2.1 lysozyme compare
AO353_04325 +0.9 1.9 hypothetical protein compare
AO353_02065 +0.8 5.2 aspartate aminotransferase compare
AO353_02175 +0.8 2.1 carbon storage regulator compare
AO353_25585 +0.8 1.6 argininosuccinate lyase compare
AO353_14990 +0.8 1.7 hypothetical protein compare
AO353_06710 +0.8 1.6 riboflavin synthase subunit alpha compare
AO353_21450 +0.8 4.8 cation:proton antiporter compare
AO353_02280 +0.8 1.1 DNA mismatch repair protein MutS compare
AO353_24685 +0.8 2.0 hypothetical protein compare
AO353_06795 +0.8 1.1 Isochorismatase compare
AO353_19025 +0.8 5.9 acetyltransferase compare
AO353_17625 +0.8 4.9 RNA polymerase subunit sigma compare
AO353_12020 +0.8 2.6 hypothetical protein compare
AO353_24605 +0.8 2.0 hypothetical protein compare
AO353_22280 +0.8 1.5 hypothetical protein compare
AO353_28295 +0.8 1.4 GNAT family acetyltransferase compare
AO353_18630 +0.8 5.4 beta-ketoacyl-ACP synthase compare
AO353_24745 +0.8 1.4 hypothetical protein compare
AO353_23570 +0.7 2.4 LysR family transcriptional regulator compare
AO353_27580 +0.7 2.3 hypothetical protein compare
AO353_15640 +0.7 1.8 acetylornithine aminotransferase compare
AO353_00885 +0.7 1.8 3-methylitaconate isomerase compare
AO353_23880 +0.7 1.9 ATPase compare
AO353_15665 +0.7 2.9 chemotaxis protein CheY compare
AO353_21460 +0.7 4.9 cation:proton antiporter compare
AO353_16195 +0.7 1.4 DNA mismatch repair protein MutT compare
AO353_22950 +0.7 2.5 universal stress protein UspA compare
AO353_22585 +0.7 3.9 HxlR family transcriptional regulator compare
AO353_01190 +0.7 1.3 hypothetical protein compare
AO353_19755 +0.7 2.4 cytosine deaminase compare
AO353_05005 +0.7 2.3 hypothetical protein compare
AO353_19000 +0.7 1.2 ABC transporter compare
AO353_03010 +0.7 3.0 succinylglutamate-semialdehyde dehydrogenase compare
AO353_09915 +0.7 3.8 long-chain acyl-CoA thioester hydrolase compare
AO353_21470 +0.7 5.7 cation:proton antiporter compare
AO353_21445 +0.7 1.6 cation:proton antiporter compare
AO353_21320 +0.7 2.2 glutathione S-transferase compare
AO353_03210 +0.7 1.7 GNAT family acetyltransferase compare
AO353_03640 +0.7 3.0 nucleotide-binding protein compare
AO353_02815 +0.7 3.1 transcriptional regulator compare
AO353_22645 +0.7 1.6 hypothetical protein compare
AO353_02090 +0.6 4.1 N-ethylammeline chlorohydrolase compare
AO353_02940 +0.6 1.4 DNA-binding protein compare
AO353_27430 +0.6 2.0 hypothetical protein compare
AO353_22360 +0.6 1.9 ABC transporter ATP-binding protein compare
AO353_16040 +0.6 1.7 hypothetical protein compare
AO353_18925 +0.6 1.3 ATPase compare
AO353_15830 +0.6 1.5 transcriptional regulator compare
AO353_08555 +0.6 2.9 hypothetical protein compare
AO353_14970 +0.6 2.2 hypothetical protein compare
AO353_04185 +0.6 2.9 DeoR family transcriptional regulator compare
AO353_00120 +0.6 1.4 DNA-binding protein compare
AO353_22915 +0.6 2.5 oxidoreductase compare
AO353_10955 +0.6 4.0 endonuclease compare
AO353_08860 +0.6 2.7 amino acid ABC transporter substrate-binding protein compare
AO353_04055 +0.6 1.1 methionine--tRNA ligase compare
AO353_07105 +0.6 1.0 biotin--protein ligase compare
AO353_11255 +0.6 2.3 RND transporter compare
AO353_09890 +0.6 2.7 phosphate ABC transporter ATP-binding protein compare
AO353_28435 +0.6 2.5 AraC family transcriptional regulator compare
AO353_19310 +0.6 1.4 enoyl-CoA hydratase compare
AO353_21770 +0.6 1.8 3-hydroxybutyrate dehydrogenase compare
AO353_05415 +0.6 1.3 hypothetical protein compare
AO353_26400 +0.6 1.6 hypothetical protein compare
AO353_05740 +0.6 2.1 hypothetical protein compare
AO353_01000 +0.6 2.4 hypothetical protein compare
AO353_12570 +0.6 1.7 type II secretion system protein GspI compare
AO353_01035 +0.6 1.2 hypothetical protein compare
AO353_01015 +0.6 1.1 hypothetical protein compare
AO353_19015 +0.6 4.6 hypothetical protein compare
AO353_07555 +0.6 2.0 glycine cleavage system protein R compare
AO353_20205 +0.6 2.3 hypothetical protein compare
AO353_26225 +0.6 2.6 hypothetical protein compare
AO353_21640 +0.6 0.9 cobalt transporter compare
AO353_20120 +0.6 1.3 hypothetical protein compare
AO353_00810 +0.6 1.3 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) compare
AO353_21620 +0.6 4.3 peptidylprolyl isomerase compare
AO353_19810 +0.6 1.7 filamentous hemagglutinin compare
AO353_09885 +0.6 1.7 transcriptional regulator PhoU compare
AO353_28300 +0.6 1.9 cupin compare
AO353_14070 +0.5 2.3 hypothetical protein compare
AO353_03275 +0.5 1.1 LysR family transcriptional regulator compare
AO353_00205 +0.5 2.2 head protein compare
AO353_24780 +0.5 2.5 glutamine synthetase compare
AO353_27380 +0.5 1.4 pyocin R2, holin compare
AO353_26315 +0.5 2.2 hypothetical protein compare
AO353_08725 +0.5 2.8 aminotransferase DegT compare
AO353_23430 +0.5 1.4 (2Fe-2S)-binding protein compare
AO353_09900 +0.5 4.0 phosphate ABC transporter permease compare
AO353_03440 +0.5 2.3 glycerol-3-phosphate ABC transporter substrate-binding protein compare
AO353_03450 +0.5 2.5 heme oxygenase compare
AO353_07250 +0.5 1.4 polyamine ABC transporter permease compare
AO353_26815 +0.5 1.9 transcriptional regulator compare
AO353_12540 +0.5 1.7 hypothetical protein compare
AO353_29105 +0.5 2.3 hypothetical protein compare
AO353_11135 +0.5 2.0 polyketide cyclase compare
AO353_05880 +0.5 1.3 plasmid stabilization protein compare
AO353_23125 +0.5 2.0 hypothetical protein compare
AO353_16375 +0.5 1.3 hypothetical protein compare
AO353_09830 +0.5 3.7 pyridine nucleotide-disulfide oxidoreductase compare
AO353_09215 +0.5 4.3 peptide ABC transporter substrate-binding protein compare
AO353_28290 +0.5 2.6 aldehyde dehydrogenase compare
AO353_27585 +0.5 1.4 DNA repair protein compare
AO353_15480 +0.5 1.2 hypothetical protein compare
AO353_08950 +0.5 2.0 hypothetical protein compare
AO353_00850 +0.5 1.9 ribonuclease activity regulator protein RraA compare
AO353_12710 +0.5 1.0 thioredoxin compare
AO353_01725 +0.5 1.2 phosphohistidine phosphatase compare
AO353_20255 +0.5 1.7 transcriptional regulator compare
AO353_12460 +0.5 3.1 malate dehydrogenase compare
AO353_27190 +0.5 1.9 hypothetical protein compare
AO353_16495 +0.5 2.5 zinc metallopeptidase RseP compare
AO353_11720 +0.5 1.3 taurine transporter ATP-binding subunit compare
AO353_09065 +0.5 2.5 hypothetical protein compare
AO353_08355 +0.5 3.2 GDSL family lipase compare
AO353_22660 +0.5 2.4 hypothetical protein compare
AO353_24940 +0.5 2.2 nitrogen fixation protein NifU compare
AO353_19710 +0.5 2.7 hypothetical protein compare
AO353_28680 +0.5 1.6 transposase compare
AO353_26310 +0.5 1.8 hypothetical protein compare
AO353_27420 +0.5 1.8 DNA-binding protein compare
AO353_12910 +0.5 2.0 hypothetical protein compare
AO353_10290 +0.5 2.0 LysR family transcriptional regulator compare
AO353_19565 +0.5 1.6 vanillate O-demethylase oxidoreductase VanB compare
AO353_09600 +0.5 2.2 hypothetical protein compare
AO353_09570 +0.5 2.7 type VI secretion protein ImpA compare
AO353_00165 +0.5 2.3 lysis protein compare
AO353_15775 +0.5 2.4 hypothetical protein compare
AO353_03130 +0.5 1.2 hypothetical protein compare
AO353_16820 +0.5 1.6 hypothetical protein compare
AO353_21540 +0.5 1.6 type VI secretion protein compare
AO353_15680 +0.5 1.3 cation-binding protein compare
AO353_15590 +0.5 2.2 hypothetical protein compare
AO353_22010 +0.5 1.8 hypothetical protein compare
AO353_04285 +0.5 1.4 spermidine/putrescine ABC transporter permease compare
AO353_02720 +0.5 2.4 cysteine synthase compare
AO353_27060 +0.5 1.5 XshC-Cox1 family protein compare
AO353_27730 +0.5 3.1 secretin compare
AO353_18955 +0.5 2.1 acyl-CoA thioesterase compare
AO353_20410 +0.5 1.1 hypothetical protein compare
AO353_24835 +0.5 2.3 acyl-CoA dehydrogenase compare
AO353_23730 +0.5 1.0 hypothetical protein compare
AO353_07595 +0.5 1.5 transcriptional regulator compare
AO353_01160 +0.5 2.3 acetyl-CoA acetyltransferase compare
AO353_23715 +0.5 2.3 hypothetical protein compare
AO353_26820 +0.5 2.2 histidine kinase compare
AO353_15035 +0.5 2.3 aldehyde dehydrogenase compare
AO353_00865 +0.5 3.0 phosphoenolpyruvate synthase compare
AO353_13840 +0.5 1.7 histidine kinase compare
AO353_19005 +0.5 2.4 esterase compare
AO353_20700 +0.5 2.0 oxidoreductase compare
AO353_27920 +0.4 2.1 arginine N-succinyltransferase compare
AO353_25660 +0.4 1.6 ABC transporter substrate-binding protein compare
AO353_17090 +0.4 2.3 hypothetical protein compare
AO353_22855 +0.4 0.9 hypothetical protein compare
AO353_18470 +0.4 2.2 hypothetical protein compare
AO353_08855 +0.4 1.7 GntR family transcriptional regulator compare
AO353_23830 +0.4 1.5 lactate dehydrogenase compare
AO353_12665 +0.4 1.3 glycosyl transferase compare
AO353_08835 +0.4 3.0 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
AO353_20510 +0.4 0.9 amidase compare
AO353_13890 +0.4 2.0 AraC family transcriptional regulator compare
AO353_21085 +0.4 2.0 lysine transporter LysE compare
AO353_02855 +0.4 2.5 flagellar basal-body rod protein FlgC compare
AO353_17720 +0.4 2.1 ABC transporter substrate-binding protein compare
AO353_11475 +0.4 1.5 hypothetical protein compare
AO353_25775 +0.4 2.3 N-acetylglucosamine-6-sulfatase compare
AO353_09875 +0.4 0.8 hypothetical protein compare
AO353_25160 +0.4 1.4 ABC transporter substrate-binding protein compare
AO353_23270 +0.4 1.8 hypothetical protein compare
AO353_04965 +0.4 1.9 D-erythro-7,8-dihydroneopterin triphosphate epimerase compare
AO353_10510 +0.4 0.9 benzoate transporter compare
AO353_15410 +0.4 1.0 hypothetical protein compare
AO353_14920 +0.4 2.4 D-amino acid oxidase compare
AO353_28800 +0.4 2.5 allophanate hydrolase compare
AO353_29165 +0.4 1.2 fructose-bisphosphate aldolase compare
AO353_08060 +0.4 1.3 hypothetical protein compare
AO353_07600 +0.4 2.0 ATP-dependent zinc protease compare


Specific Phenotypes

For 6 genes in this experiment

For stress 1-ethyl-3-methylimidazolium lysine in Pseudomonas fluorescens FW300-N2E3

For stress 1-ethyl-3-methylimidazolium lysine across organisms