Experiment set4IT074 for Vibrio cholerae E7946 ATCC 55056

Compare to:

ICP1_phage_23.5_MOI_rep1

200 most important genes:

  gene name fitness t score description  
CSW01_10740 -5.7 -1.3 peptidase M15 compare
CSW01_00540 -5.7 -2.3 hypothetical protein compare
CSW01_00380 -5.5 -2.2 hypothetical protein compare
CSW01_00940 -4.5 -1.5 hypothetical protein compare
CSW01_10255 -4.5 -2.1 cytochrome c-type biogenesis protein CcmH compare
CSW01_14680 -4.1 -0.9 aminotransferase compare
CSW01_11555 -3.9 -3.8 riboflavin synthase compare
CSW01_12365 -3.9 -2.7 inorganic phosphate transporter compare
CSW01_01485 -3.9 -5.3 transcriptional regulator compare
CSW01_03410 -3.8 -2.3 polyribonucleotide nucleotidyltransferase compare
CSW01_08070 -3.7 -1.2 hypothetical protein compare
CSW01_13285 -3.6 -3.5 ribulose-phosphate 3-epimerase compare
CSW01_09420 -3.6 -2.3 DUF2062 domain-containing protein compare
CSW01_12005 -3.5 -3.4 aerobic respiration two-component sensor histidine kinase ArcB compare
CSW01_06325 -3.4 -1.5 hypothetical protein compare
CSW01_04820 -3.3 -11.1 serine hydroxymethyltransferase compare
CSW01_10170 -3.3 -2.1 MarC family protein compare
CSW01_13305 -3.3 -2.7 shikimate kinase compare
CSW01_06380 -3.3 -2.2 GTP cyclohydrolase II compare
CSW01_09525 -3.2 -1.8 DNA translocase FtsK compare
CSW01_09720 -3.2 -2.2 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
CSW01_08705 -3.2 -4.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
CSW01_11560 -3.1 -6.3 riboflavin biosynthesis protein RibD compare
CSW01_03210 -3.1 -14.4 iron ABC transporter permease compare
CSW01_12320 -3.0 -4.8 3',5'-cyclic-AMP phosphodiesterase compare
CSW01_03205 -3.0 -10.4 iron ABC transporter substrate-binding protein compare
CSW01_00015 -3.0 -4.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
CSW01_07580 -2.8 -1.7 hypothetical protein compare
CSW01_00560 -2.8 -5.5 DNA polymerase I compare
CSW01_06810 -2.7 -1.1 hypothetical protein compare
CSW01_01490 -2.7 -2.2 Fis family transcriptional regulator compare
CSW01_13450 -2.7 -4.0 EF-P beta-lysylation protein EpmB compare
CSW01_13445 -2.6 -2.4 elongation factor P compare
CSW01_05125 -2.5 -2.0 ribonuclease T compare
CSW01_03215 -2.4 -10.6 ABC transporter ATP-binding protein compare
CSW01_18350 -2.4 -1.7 cell division protein DedD compare
CSW01_13805 -2.3 -5.2 Hsp33 family molecular chaperone HslO compare
CSW01_05575 -2.3 -4.4 phosphate acetyltransferase compare
CSW01_10440 -2.3 -3.4 succinate dehydrogenase flavoprotein subunit compare
CSW01_03980 -2.3 -8.4 IMP dehydrogenase compare
CSW01_02875 -2.1 -5.9 DNA recombination/repair protein RecA compare
CSW01_07060 -2.1 -2.2 TetR/AcrR family transcriptional regulator compare
CSW01_11920 -2.1 -6.9 NupC/NupG family nucleoside CNT transporter compare
CSW01_03915 -2.0 -1.6 Fe-S assembly protein IscX compare
CSW01_15810 -1.9 -2.0 hypothetical protein compare
CSW01_07200 -1.9 -1.4 cbb3-type cytochrome oxidase assembly protein CcoS compare
CSW01_14055 -1.9 -6.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
CSW01_05265 -1.9 -1.3 methionine--tRNA ligase compare
CSW01_12885 -1.9 -6.3 fructose 1,6-bisphosphatase compare
CSW01_10285 -1.9 -2.4 heme exporter protein CcmB compare
CSW01_13635 -1.8 -8.2 thiol:disulfide interchange protein DsbD compare
CSW01_12680 -1.8 -5.8 cytosol aminopeptidase compare
CSW01_02530 -1.8 -5.4 D-erythrose-4-phosphate dehydrogenase compare
CSW01_17495 -1.8 -5.3 glycerol-3-phosphate dehydrogenase compare
CSW01_19435 -1.8 -2.0 hypothetical protein compare
CSW01_11785 -1.7 -2.3 exonuclease V subunit gamma compare
CSW01_10265 -1.7 -4.7 c-type cytochrome biogenesis protein CcmF compare
CSW01_14910 -1.7 -1.1 cold-shock protein compare
CSW01_08935 -1.7 -1.8 N-acetylmannosamine-6-phosphate 2-epimerase compare
CSW01_13810 -1.7 -5.4 phosphoenolpyruvate carboxykinase (ATP) compare
CSW01_10260 -1.6 -2.4 thiol:disulfide interchange protein DsbE compare
CSW01_11780 -1.6 -3.4 exodeoxyribonuclease V subunit beta compare
CSW01_16205 -1.6 -2.6 DUF3465 domain-containing protein compare
CSW01_17275 -1.6 -0.8 large conductance mechanosensitive channel protein MscL compare
CSW01_03795 -1.6 -1.4 phosphate ABC transporter ATP-binding protein compare
CSW01_03790 -1.6 -3.2 phosphate ABC transporter, permease protein PstA compare
CSW01_05730 -1.6 -8.4 inosine/guanosine kinase compare
CSW01_12090 -1.6 -3.0 hypothetical protein compare
CSW01_02490 -1.5 -5.7 glutathione synthetase compare
CSW01_04845 -1.5 -3.7 D-alanyl-D-alanine carboxypeptidase compare
CSW01_05065 -1.5 -4.8 N-acetylglucosamine repressor compare
CSW01_04375 -1.5 -1.8 SsrA-binding protein compare
CSW01_17325 -1.5 -4.5 transaldolase compare
CSW01_01125 -1.5 -5.0 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
CSW01_18730 -1.5 -1.1 DUF406 domain-containing protein compare
CSW01_06280 -1.5 -4.1 succinylglutamate desuccinylase compare
CSW01_00500 -1.4 -9.0 glycerol-3-phosphate 1-O-acyltransferase compare
CSW01_16835 -1.4 -3.1 catabolite repressor/activator compare
CSW01_09625 -1.4 -1.7 hypothetical protein compare
CSW01_03695 -1.4 -4.0 ribosomal large subunit pseudouridine synthase D compare
CSW01_01820 -1.4 -4.4 N-acetylmuramoyl-L-alanine amidase compare
CSW01_05130 -1.4 -3.5 flagellar protein MotY compare
CSW01_10295 -1.3 -1.8 DUF2802 domain-containing protein compare
CSW01_00110 -1.3 -2.3 hypothetical protein compare
CSW01_16900 -1.3 -1.5 twin-arginine translocase TatA/TatE family subunit compare
CSW01_00460 -1.3 -3.1 twin-arginine translocase subunit TatA compare
CSW01_10290 -1.3 -2.6 cytochrome c biogenesis ATP-binding export protein CcmA compare
CSW01_00450 -1.3 -1.3 SCP2 domain-containing protein compare
CSW01_06195 -1.3 -1.9 hypothetical protein compare
CSW01_02970 -1.3 -4.3 glutamate--cysteine ligase compare
CSW01_03420 -1.3 -2.7 MarR family transcriptional regulator compare
CSW01_11730 -1.3 -1.7 2-dehydropantoate 2-reductase compare
CSW01_15430 -1.3 -1.3 hypothetical protein compare
CSW01_02450 -1.2 -5.0 pyrroline-5-carboxylate reductase compare
CSW01_11670 -1.2 -1.3 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
CSW01_03325 -1.2 -2.1 porin compare
CSW01_10875 -1.2 -3.1 redox-regulated ATPase YchF compare
CSW01_06825 -1.2 -1.3 acylphosphatase compare
CSW01_11215 -1.2 -3.4 flagellar hook assembly protein FlgD compare
CSW01_05585 -1.2 -3.9 DUF412 domain-containing protein compare
CSW01_05580 -1.2 -4.2 acetate kinase compare
CSW01_03045 -1.2 -1.6 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CSW01_15860 -1.2 -1.0 DUF645 domain-containing protein compare
CSW01_18315 -1.2 -1.2 methyltransferase compare
CSW01_10145 -1.2 -2.6 ribonuclease E compare
CSW01_07085 -1.2 -4.3 carboxypeptidase M32 compare
CSW01_00650 -1.2 -3.9 tyrosine recombinase XerC compare
CSW01_01800 -1.1 -0.9 tRNA-Met compare
CSW01_07130 -1.1 -0.8 hypothetical protein compare
CSW01_14100 -1.1 -1.4 hypothetical protein compare
CSW01_08805 -1.1 -3.7 hypothetical protein compare
CSW01_14085 -1.1 -1.5 transcriptional regulator compare
CSW01_17595 -1.1 -0.7 TIGR02808 family protein compare
CSW01_18695 -1.1 -2.7 energy transducer TonB compare
CSW01_16285 -1.1 -1.1 acetyltransferase compare
CSW01_07150 -1.1 -1.4 spermidine/putrescine ABC transporter permease PotC compare
CSW01_13420 -1.1 -1.4 elongation factor P--(R)-beta-lysine ligase compare
CSW01_06335 -1.1 -2.3 (2Fe-2S)-binding protein compare
CSW01_17265 -1.1 -1.8 hypothetical protein compare
CSW01_07175 -1.1 -2.1 DUF2987 domain-containing protein compare
CSW01_13675 -1.0 -2.4 bifunctional GTP diphosphokinase/guanosine-3',5'-bis(diphosphate) 3'-diphosphatase compare
CSW01_16460 -1.0 -0.9 acetyltransferase compare
CSW01_11745 -1.0 -1.3 cysteine desulfurase sulfur acceptor subunit CsdE compare
CSW01_11000 -1.0 -1.4 hypothetical protein compare
CSW01_10715 -1.0 -1.8 DUF2919 domain-containing protein compare
CSW01_16570 -1.0 -1.5 N-acetyltransferase compare
CSW01_11225 -1.0 -4.1 flagellar basal body rod protein FlgB compare
CSW01_00465 -1.0 -1.3 twin-arginine translocase subunit TatB compare
CSW01_17905 -1.0 -2.5 aquaporin family protein compare
CSW01_11145 -1.0 -1.6 hypothetical protein compare
CSW01_05505 -1.0 -2.0 response regulator compare
CSW01_11240 -1.0 -2.0 flagella basal body P-ring formation protein FlgA compare
CSW01_15780 -1.0 -1.5 hypothetical protein compare
CSW01_02020 -1.0 -0.9 phosphoadenosine phosphosulfate reductase compare
CSW01_05225 -1.0 -1.2 molybdopterin synthase sulfur carrier subunit compare
CSW01_11250 -0.9 -2.4 molecular chaperone compare
CSW01_10075 -0.9 -2.9 endolytic transglycosylase MltG compare
CSW01_15460 -0.9 -1.2 type B-5 chloramphenicol O-acetyltransferase CatB9 compare
CSW01_03745 -0.9 -1.3 ferredoxin compare
CSW01_18635 -0.9 -2.5 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) compare
CSW01_10630 -0.9 -2.1 flagella biosynthesis chaperone FliJ compare
CSW01_02005 -0.9 -2.6 hypothetical protein compare
CSW01_12735 -0.9 -2.9 RidA family protein compare
CSW01_12250 -0.9 -2.6 site-specific tyrosine recombinase XerD compare
CSW01_08700 -0.9 -1.4 DUF2498 domain-containing protein compare
CSW01_10020 -0.9 -4.6 ROK family protein compare
CSW01_15410 -0.9 -1.4 hypothetical protein compare
CSW01_11220 -0.9 -1.7 flagellar basal body rod protein FlgC compare
CSW01_06395 -0.9 -3.6 iron-regulated protein A compare
CSW01_10340 -0.9 -1.8 MinD/ParA family protein compare
CSW01_08660 -0.9 -3.3 PurR family transcriptional regulator compare
CSW01_17060 -0.9 -1.4 DUF2861 domain-containing protein compare
CSW01_16030 -0.9 -1.2 DUF3709 domain-containing protein compare
CSW01_07775 -0.9 -3.2 flagellar motor protein MotA compare
CSW01_05815 -0.9 -0.8 glutaredoxin compare
CSW01_19125 -0.9 -0.8 branched-chain amino acid ABC transporter compare
CSW01_01555 -0.9 -4.9 ATP-dependent RNA helicase RhlB compare
CSW01_03845 -0.9 -1.0 hypothetical protein compare
CSW01_17000 -0.9 -1.0 DUF3332 domain-containing protein compare
CSW01_09465 -0.9 -3.0 NAD(P)/FAD-dependent oxidoreductase compare
CSW01_17320 -0.9 -2.1 hypothetical protein compare
CSW01_16435 -0.9 -0.7 DUF3265 domain-containing protein compare
CSW01_05385 -0.9 -2.1 YcgN family cysteine cluster protein compare
CSW01_08140 -0.9 -2.2 DUF1415 domain-containing protein compare
CSW01_06390 -0.8 -2.4 thiol oxidoreductase compare
CSW01_19385 -0.8 -1.2 tRNA (pseudouridine(54)-N(1))-methyltransferase TrmY compare
CSW01_17575 -0.8 -1.9 mycothiol reductase compare
CSW01_00470 -0.8 -2.6 twin-arginine translocase subunit TatC compare
CSW01_06790 -0.8 -2.4 maleylacetoacetate isomerase compare
CSW01_13165 -0.8 -3.2 sel1 repeat family protein compare
CSW01_08675 -0.8 -0.6 DUF2007 domain-containing protein compare
CSW01_18160 -0.8 -2.0 hypothetical protein compare
CSW01_10610 -0.8 -2.7 flagellar motor switch protein FliM compare
CSW01_15560 -0.8 -0.9 lipocalin compare
CSW01_08960 -0.8 -2.1 DNA repair protein RadC compare
CSW01_16850 -0.8 -3.0 hybrid sensor histidine kinase/response regulator compare
CSW01_12255 -0.8 -1.8 flavodoxin FldB compare
CSW01_08625 -0.8 -2.3 chromosome partition protein MukE compare
CSW01_07500 -0.8 -0.6 DUF2835 domain-containing protein compare
CSW01_06400 -0.8 -2.8 DUF1513 domain-containing protein compare
CSW01_04080 -0.8 -1.9 hypothetical protein compare
CSW01_17455 -0.8 -2.6 hypothetical protein compare
CSW01_18195 -0.8 -1.7 DUF3024 domain-containing protein compare
CSW01_17750 -0.8 -0.6 cytochrome B compare
CSW01_18155 -0.8 -1.8 HAD family hydrolase compare
CSW01_05070 -0.8 -3.6 N-acetylglucosamine-6-phosphate deacetylase compare
CSW01_12200 -0.8 -0.9 ribosomal RNA small subunit methyltransferase H compare
CSW01_12260 -0.8 -2.4 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
CSW01_15705 -0.8 -1.3 DUF3265 domain-containing protein compare
CSW01_08585 -0.8 -0.7 DUF4250 domain-containing protein compare
CSW01_16255 -0.8 -1.7 hypothetical protein compare
CSW01_10235 -0.7 -1.1 hypothetical protein compare
CSW01_16785 -0.7 -1.3 hypothetical protein compare
CSW01_00285 -0.7 -1.7 DUF1488 domain-containing protein compare
CSW01_07195 -0.7 -1.7 cytochrome biogenesis protein compare
CSW01_10600 -0.7 -1.1 flagellar biosynthetic protein FliO compare
CSW01_07330 -0.7 -1.2 colonization factor compare
CSW01_08345 -0.7 -0.9 hypothetical protein compare
CSW01_05825 -0.7 -1.5 transcriptional regulator HexR compare
CSW01_00005 -0.7 -1.1 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Vibrio cholerae E7946 ATCC 55056 in phage experiments

For phage ICP1_phage across organisms