Experiment set4IT074 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

2'-Deoxyinosine 5 mM carbon source

200 most important genes:

  gene name fitness t score description  
H281DRAFT_01116 -6.5 -2.3 deoxyribose kinase (EC 2.7.1.15) (from data) compare
H281DRAFT_05801 -6.2 -4.3 5,10-methylenetetrahydrofolate reductase (NAD(P)) compare
H281DRAFT_00117 -6.2 -6.5 sulfate adenylyltransferase subunit 2 compare
H281DRAFT_05621 -5.8 -3.9 glutamate synthase (NADH) small subunit compare
H281DRAFT_06067 -5.7 -12.8 tryptophan synthase, beta chain compare
H281DRAFT_02214 -5.7 -18.6 homoserine O-acetyltransferase compare
H281DRAFT_06072 -5.7 -10.5 3-isopropylmalate dehydrogenase compare
H281DRAFT_02926 -5.5 -8.8 diguanylate cyclase/phosphodiesterase compare
H281DRAFT_00115 -5.5 -2.7 Uncharacterized conserved protein, DUF934 family compare
H281DRAFT_06264 -5.1 -5.7 glutamate 5-kinase compare
H281DRAFT_06068 -5.1 -6.0 phosphoribosylanthranilate isomerase compare
H281DRAFT_04119 -5.0 -6.8 ornithine carbamoyltransferase compare
H281DRAFT_05620 -5.0 -21.0 glutamate synthase (NADH) large subunit compare
H281DRAFT_04120 -4.8 -7.2 argininosuccinate synthase compare
H281DRAFT_03925 -4.7 -8.9 chorismate mutase compare
H281DRAFT_04610 -4.7 -15.9 Fe-S oxidoreductase compare
H281DRAFT_00116 -4.5 -1.6 phosphoadenylylsulfate reductase (thioredoxin) compare
H281DRAFT_03926 -4.5 -8.8 phosphoserine aminotransferase apoenzyme compare
H281DRAFT_06059 -4.5 -10.2 O-succinylhomoserine sulfhydrylase compare
H281DRAFT_00395 -4.3 -8.0 hydroxymethylpyrimidine synthase compare
H281DRAFT_04677 -4.3 -10.6 starvation-inducible DNA-binding protein compare
H281DRAFT_05712 -4.3 -3.8 indole-3-glycerol phosphate synthase compare
H281DRAFT_00114 -4.2 -7.3 sulfite reductase (NADPH) beta subunit compare
H281DRAFT_05713 -4.2 -10.1 anthranilate phosphoribosyltransferase compare
H281DRAFT_05618 -4.2 -9.5 outer membrane protein compare
H281DRAFT_06075 -4.1 -9.3 3-isopropylmalate dehydratase, large subunit compare
H281DRAFT_05715 -4.0 -13.7 anthranilate synthase, component I compare
H281DRAFT_00118 -4.0 -5.2 sulfate adenylyltransferase subunit 1 compare
H281DRAFT_00120 -3.9 -5.3 sirohydrochlorin cobaltochelatase compare
H281DRAFT_02215 -3.9 -4.5 methionine biosynthesis protein MetW compare
H281DRAFT_04388 -3.5 -1.6 trehalose 6-phosphatase (EC 3.1.3.12) compare
H281DRAFT_01115 -3.5 -4.6 deoxynucleoside transporter, permease component 1 (from data) compare
H281DRAFT_00113 -3.5 -6.2 transcriptional regulator, LysR family compare
H281DRAFT_04553 -3.4 -4.5 ketol-acid reductoisomerase compare
H281DRAFT_00909 -3.3 -3.9 phosphoribosylformylglycinamidine synthase compare
H281DRAFT_05160 -3.3 -6.4 allantoicase compare
H281DRAFT_02065 -3.3 -2.3 rfaE bifunctional protein, domain II compare
H281DRAFT_06008 -3.3 -7.8 RNA polymerase, sigma 70 subunit, RpoD compare
H281DRAFT_06315 -3.3 -1.4 glyceraldehyde-3-phosphate dehydrogenase (NAD+) compare
H281DRAFT_04974 -3.1 -3.8 aromatic-amino-acid transaminase compare
H281DRAFT_06027 -3.1 -12.1 AMP nucleosidase compare
H281DRAFT_04082 -3.0 -5.5 ATP-dependent Clp protease ATP-binding subunit ClpA compare
H281DRAFT_00194 -3.0 -2.0 argininosuccinate lyase compare
H281DRAFT_06073 -2.8 -2.2 3-isopropylmalate dehydratase, small subunit compare
H281DRAFT_00886 -2.8 -4.6 two component transcriptional regulator, winged helix family compare
H281DRAFT_04679 -2.8 -2.9 pyrroline-5-carboxylate reductase compare
H281DRAFT_01114 -2.7 -2.8 deoxynucleoside transporter, substrate-binding component (from data) compare
H281DRAFT_00465 -2.7 -2.6 PAS/PAC sensor signal transduction histidine kinase /multi-sensor signal transduction histidine kinase compare
H281DRAFT_04635 -2.7 -2.2 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) compare
H281DRAFT_01117 -2.7 -4.8 acetaldehyde dehydrogenase (EC 1.2.1.3) (from data) compare
H281DRAFT_00860 -2.6 -3.0 phosphoserine phosphatase compare
H281DRAFT_05159 -2.6 -2.1 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase compare
H281DRAFT_02036 -2.5 -5.6 Thiol-disulfide isomerase or thioredoxin compare
H281DRAFT_05199 -2.4 -5.4 transcriptional regulator, TetR family compare
H281DRAFT_02000 -2.3 -7.3 glycerol-3-phosphate dehydrogenase (NAD(P)+) compare
H281DRAFT_05815 -2.3 -5.7 5,10-methenyltetrahydrofolate synthetase compare
H281DRAFT_04302 -2.3 -1.8 molybdopterin adenylyltransferase compare
H281DRAFT_05714 -2.3 -1.6 anthranilate synthase, component II compare
H281DRAFT_04953 -2.2 -9.2 acetyl-coenzyme A synthetase compare
H281DRAFT_00894 -2.2 -7.7 glycerate kinase compare
H281DRAFT_06023 -2.1 -4.2 hypothetical protein compare
H281DRAFT_06490 -2.0 -2.3 hypothetical protein compare
H281DRAFT_06277 -2.0 -3.6 hypothetical protein compare
H281DRAFT_05279 -2.0 -1.8 malonate decarboxylase beta subunit compare
H281DRAFT_01985 -2.0 -5.7 protoheme IX farnesyltransferase compare
H281DRAFT_03733 -2.0 -1.4 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_00853 -1.9 -2.1 3-oxoacyl-[acyl-carrier-protein] reductase /acetoacetyl-CoA reductase compare
H281DRAFT_01798 -1.9 -2.2 Transmembrane transcriptional regulator (anti-sigma factor RsiW) compare
H281DRAFT_04835 -1.9 -3.2 hypothetical protein compare
H281DRAFT_00286 -1.9 -2.7 transaldolase compare
H281DRAFT_05041 -1.9 -1.7 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_05162 -1.9 -7.7 Uncharacterized membrane protein compare
H281DRAFT_04338 -1.9 -7.2 cyclic pyranopterin monophosphate synthase subunit MoaA compare
H281DRAFT_03963 -1.9 -5.4 molybdenum cofactor sulfurylase compare
H281DRAFT_00845 -1.8 -5.9 hypothetical protein compare
H281DRAFT_06065 -1.8 -6.8 tryptophan synthase, alpha chain compare
H281DRAFT_01053 -1.8 -2.2 3-hydroxyisobutyrate dehydrogenase compare
H281DRAFT_05814 -1.8 -6.3 Predicted transcription regulator, contains HTH domain, MarR family compare
H281DRAFT_00933 -1.8 -5.2 hypothetical protein compare
H281DRAFT_06238 -1.8 -1.3 hypothetical protein compare
H281DRAFT_04356 -1.8 -3.6 anti sigma-E protein, RseA compare
H281DRAFT_00977 -1.7 -1.7 hypothetical protein compare
H281DRAFT_05544 -1.7 -2.4 NitT/TauT family transport system permease protein compare
H281DRAFT_05214 -1.7 -1.7 transcriptional regulator, LacI family compare
H281DRAFT_00841 -1.7 -1.8 hypothetical protein compare
H281DRAFT_05158 -1.7 -3.7 putative urate catabolism protein compare
H281DRAFT_06549 -1.7 -2.1 transcriptional regulator, AraC family compare
H281DRAFT_00650 -1.7 -3.9 transcriptional regulator, DeoR family compare
H281DRAFT_05601 -1.6 -1.6 hypothetical protein compare
H281DRAFT_04585 -1.6 -2.0 hypothetical protein compare
H281DRAFT_06480 -1.6 -1.1 arginine succinyltransferase compare
H281DRAFT_00786 -1.6 -4.6 hydroxypyruvate isomerase compare
H281DRAFT_04831 -1.5 -2.7 hypothetical protein compare
H281DRAFT_05469 -1.5 -2.4 transcriptional regulator, IclR family compare
H281DRAFT_05165 -1.5 -4.4 transcriptional regulator, LysR family compare
H281DRAFT_04707 -1.5 -7.2 HAD-superfamily subfamily IB hydrolase, TIGR01490 compare
H281DRAFT_00075 -1.5 -2.0 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_00199 -1.5 -1.7 uroporphyrinogen III methyltransferase / synthase compare
H281DRAFT_03204 -1.5 -3.9 L-fucose mutarotase compare
H281DRAFT_05302 -1.5 -1.5 FAD/FMN-containing dehydrogenase compare
H281DRAFT_06272 -1.5 -1.2 uncharacterized protein compare
H281DRAFT_04195 -1.5 -1.3 heptosyltransferase-2 compare
H281DRAFT_06276 -1.5 -2.8 hypothetical protein compare
H281DRAFT_00755 -1.5 -4.4 transcriptional regulator, TetR family compare
H281DRAFT_04733 -1.5 -2.8 Protein of unknown function (DUF3318) compare
H281DRAFT_06037 -1.4 -2.5 molybdate transport system substrate-binding protein compare
H281DRAFT_04297 -1.4 -7.4 adenosylcobinamide-phosphate synthase compare
H281DRAFT_04755 -1.4 -2.5 transcriptional regulator, LysR family compare
H281DRAFT_01120 -1.4 -4.5 monosaccharide ABC transporter membrane protein, CUT2 family compare
H281DRAFT_04070 -1.3 -5.0 nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
H281DRAFT_04071 -1.3 -6.2 quinolinate synthetase compare
H281DRAFT_00854 -1.3 -4.5 polyhydroxyalkanoate synthesis repressor PhaR compare
H281DRAFT_02592 -1.3 -3.1 fumarase, class II compare
H281DRAFT_01993 -1.3 -4.7 cytochrome c oxidase subunit 1 compare
H281DRAFT_00746 -1.3 -3.2 ADP-ribose pyrophosphatase YjhB, NUDIX family compare
H281DRAFT_03381 -1.3 -2.1 transcriptional regulator, GntR family compare
H281DRAFT_00219 -1.3 -4.0 nitrogen regulatory protein P-II family compare
H281DRAFT_05876 -1.3 -2.7 transcriptional regulator, TetR family compare
H281DRAFT_02201 -1.3 -2.3 hypothetical protein compare
H281DRAFT_00531 -1.3 -2.4 hypothetical protein compare
H281DRAFT_04369 -1.2 -2.2 Uncharacterized conserved protein YjbJ, UPF0337 family compare
H281DRAFT_01256 -1.2 -2.0 hypothetical protein compare
H281DRAFT_04719 -1.2 -2.6 TolB protein compare
H281DRAFT_03277 -1.2 -1.8 hypothetical protein compare
H281DRAFT_03306 -1.2 -1.5 Cytochrome c, mono- and diheme variants compare
H281DRAFT_05963 -1.2 -5.4 transcriptional regulator, IclR family compare
H281DRAFT_02940 -1.2 -1.7 beta-methylmalyl-CoA/L-malyl-CoA lyase (EC 4.1.3.24) compare
H281DRAFT_00250 -1.2 -1.9 hypothetical protein compare
H281DRAFT_04735 -1.2 -2.5 Membrane-anchored ribosome-binding protein, inhibits growth in stationary phase, ElaB/YqjD/DUF883 family compare
H281DRAFT_05515 -1.2 -2.4 branched-chain amino acid transport system substrate-binding protein compare
H281DRAFT_03006 -1.2 -2.8 transcriptional regulator, GntR family compare
H281DRAFT_05717 -1.2 -5.9 ribulose-5-phosphate 3-epimerase compare
H281DRAFT_00787 -1.2 -4.7 tartronate-semialdehyde synthase compare
H281DRAFT_01235 -1.2 -2.3 DNA-binding protein H-NS compare
H281DRAFT_01122 -1.2 -1.4 hypothetical protein compare
H281DRAFT_06039 -1.2 -1.9 molybdate transport system ATP-binding protein compare
H281DRAFT_02136 -1.2 -1.3 hypothetical protein compare
H281DRAFT_04879 -1.1 -1.9 putative MFS transporter, AGZA family, xanthine/uracil permease compare
H281DRAFT_00812 -1.1 -2.2 molybdopterin molybdotransferase compare
H281DRAFT_04192 -1.1 -5.3 Predicted branched-chain amino acid permease (azaleucine resistance) compare
H281DRAFT_02738 -1.1 -2.5 molybdate transport system substrate-binding protein compare
H281DRAFT_04246 -1.1 -2.8 glutathione S-transferase compare
H281DRAFT_00840 -1.1 -5.2 5'-nucleotidase /3'-nucleotidase /exopolyphosphatase compare
H281DRAFT_03297 -1.1 -1.4 ADP-ribose pyrophosphatase YjhB, NUDIX family compare
H281DRAFT_00785 -1.1 -3.5 2-hydroxy-3-oxopropionate reductase compare
H281DRAFT_04710 -1.1 -1.2 phosphoribosylformylglycinamidine cyclo-ligase compare
H281DRAFT_00842 -1.1 -2.5 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
H281DRAFT_02496 -1.1 -1.9 transcriptional regulator, GntR family compare
H281DRAFT_00123 -1.1 -1.1 aminopeptidase A. Metallo peptidase. MEROPS family M17 compare
H281DRAFT_03834 -1.1 -1.5 NitT/TauT family transport system substrate-binding protein compare
H281DRAFT_04727 -1.1 -2.1 transcriptional repressor NrdR compare
H281DRAFT_03429 -1.1 -1.3 cytochrome bo3 quinol oxidase subunit 4 (EC 1.10.3.-) compare
H281DRAFT_00471 -1.1 -3.0 transcriptional regulator, IclR family compare
H281DRAFT_04984 -1.1 -3.3 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
H281DRAFT_00806 -1.1 -1.5 Membrane transporters of cations and cationic drugs compare
H281DRAFT_06562 -1.1 -1.6 hypothetical protein compare
H281DRAFT_03281 -1.0 -1.2 Glycosyltransferase compare
H281DRAFT_04972 -1.0 -3.2 hypothetical protein compare
H281DRAFT_02903 -1.0 -2.2 L-lactate dehydrogenase complex protein LldG compare
H281DRAFT_03637 -1.0 -2.5 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_01443 -1.0 -2.2 RND family efflux transporter, MFP subunit compare
H281DRAFT_04069 -1.0 -7.6 L-aspartate oxidase compare
H281DRAFT_00378 -1.0 -2.1 glutamate synthase (NADPH/NADH) small chain compare
H281DRAFT_00015 -1.0 -1.6 hypothetical protein compare
H281DRAFT_04734 -1.0 -2.8 Uncharacterized membrane protein YqjE compare
H281DRAFT_04753 -1.0 -6.1 xanthine dehydrogenase, molybdenum binding subunit apoprotein compare
H281DRAFT_04163 -1.0 -2.6 zinc/manganese transport system ATP-binding protein compare
H281DRAFT_03640 -1.0 -1.4 transcriptional regulator, IclR family compare
H281DRAFT_01684 -1.0 -2.1 transcriptional regulator, TetR family compare
H281DRAFT_06441 -1.0 -3.3 cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein (EC 1.10.3.10) compare
H281DRAFT_05902 -1.0 -1.4 2-Methylisocitrate lyase, PEP mutase family compare
H281DRAFT_05520 -1.0 -3.7 transcriptional regulator, TetR family compare
H281DRAFT_06387 -1.0 -2.1 GntR family transcriptional regulator compare
H281DRAFT_00852 -1.0 -3.1 acetyl-CoA acetyltransferase compare
H281DRAFT_02959 -1.0 -2.1 putative spermidine/putrescine transport system substrate-binding protein compare
H281DRAFT_02956 -1.0 -2.0 transcriptional regulator, GntR family compare
H281DRAFT_02972 -1.0 -1.6 hypothetical protein compare
H281DRAFT_01596 -1.0 -2.7 3-oxoadipate CoA-transferase beta subunit compare
H281DRAFT_00220 -0.9 -3.6 Outer membrane protein (porin) compare
H281DRAFT_04969 -0.9 -4.2 4Fe-4S binding domain-containing protein compare
H281DRAFT_04278 -0.9 -3.6 6-phosphogluconate dehydratase compare
H281DRAFT_00147 -0.9 -1.4 uncharacterized domain 1-containing protein compare
H281DRAFT_02071 -0.9 -3.1 transcriptional regulator, IclR family compare
H281DRAFT_01049 -0.9 -1.1 Nucleoside-diphosphate-sugar epimerase compare
H281DRAFT_02001 -0.9 -2.9 protein translocase subunit secB compare
H281DRAFT_03162 -0.9 -2.5 transcriptional regulator, XRE family with cupin sensor compare
H281DRAFT_03273 -0.9 -1.8 Uncharacterized membrane protein YqjE compare
H281DRAFT_03072 -0.9 -2.0 Signal transduction histidine kinase compare
H281DRAFT_01090 -0.9 -2.5 Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) family compare
H281DRAFT_00851 -0.9 -4.9 polyhydroxyalkanoate synthase compare
H281DRAFT_06105 -0.9 -2.2 transcriptional regulator, GntR family compare
H281DRAFT_03069 -0.9 -0.8 Uncharacterized conserved protein compare
H281DRAFT_01276 -0.9 -1.6 vanillin synthase /trans-feruloyl-CoA hydratase compare
H281DRAFT_05060 -0.9 -1.6 Permeases of the drug/metabolite transporter (DMT) superfamily compare
H281DRAFT_06180 -0.9 -2.0 hypothetical protein compare
H281DRAFT_00352 -0.9 -1.8 transcriptional regulator, LysR family compare
H281DRAFT_00788 -0.9 -3.3 transcriptional regulator, LysR family compare
H281DRAFT_05085 -0.9 -1.5 DNA helicase/exodeoxyribonuclease V, gamma subunit compare
H281DRAFT_00819 -0.9 -1.3 competence protein ComEA compare
H281DRAFT_00327 -0.9 -2.7 amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-) compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source 2'-Deoxyinosine in Paraburkholderia bryophila 376MFSha3.1

For carbon source 2'-Deoxyinosine across organisms