Experiment set4IT074 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

2'-Deoxyinosine 5 mM carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_04390 +2.6 18.3 ATP-binding cassette, subfamily B compare
H281DRAFT_04391 +2.3 15.4 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_06120 +2.2 2.6 hypothetical protein compare
H281DRAFT_00885 +1.8 7.2 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ compare
H281DRAFT_03460 +1.7 2.2 Protein of unknown function (DUF2950) compare
H281DRAFT_01184 +1.7 1.9 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_04270 +1.5 7.3 L-glutamate-binding protein /L-aspartate-binding protein compare
H281DRAFT_01318 +1.5 2.3 hypothetical protein compare
H281DRAFT_02148 +1.5 3.0 cytochrome c compare
H281DRAFT_01621 +1.5 2.2 transcriptional regulator, AraC family compare
H281DRAFT_02683 +1.4 1.6 xanthine dehydrogenase accessory factor compare
H281DRAFT_02052 +1.4 2.9 hypothetical protein compare
H281DRAFT_04880 +1.4 1.9 PRC-barrel domain-containing protein compare
H281DRAFT_01047 +1.3 2.4 GTP cyclohydrolase II compare
H281DRAFT_01390 +1.3 1.9 hypothetical protein compare
H281DRAFT_04220 +1.3 5.4 Cytochrome c, mono- and diheme variants compare
H281DRAFT_05248 +1.3 1.2 hypothetical protein compare
H281DRAFT_02346 +1.2 2.8 general secretion pathway protein M compare
H281DRAFT_01305 +1.2 5.6 hypothetical protein compare
H281DRAFT_03863 +1.2 1.7 D-alanyl-D-alanine carboxypeptidase compare
H281DRAFT_01262 +1.2 2.3 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_01484 +1.2 3.0 transcriptional regulator, AraC family compare
H281DRAFT_01457 +1.2 2.7 hypothetical protein compare
H281DRAFT_04268 +1.2 7.9 L-glutamate ABC transporter membrane protein /L-aspartate ABC transporter membrane protein compare
H281DRAFT_04857 +1.1 1.8 hypothetical protein compare
H281DRAFT_05778 +1.1 2.0 flagellar motor switch protein FliN/FliY compare
H281DRAFT_00201 +1.1 1.5 hypothetical protein compare
H281DRAFT_01413 +1.1 1.6 hypothetical protein compare
H281DRAFT_05376 +1.1 2.6 hypothetical protein compare
H281DRAFT_01748 +1.1 4.2 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
H281DRAFT_02232 +1.1 5.2 preQ(0) biosynthesis protein QueC compare
H281DRAFT_01061 +1.1 2.4 hypothetical protein compare
H281DRAFT_04219 +1.1 4.8 Cytochrome c553 compare
H281DRAFT_02224 +1.1 2.0 rod shape-determining protein MreC compare
H281DRAFT_04400 +1.1 7.0 membrane-bound lytic murein transglycosylase D compare
H281DRAFT_02791 +1.0 1.2 apolipoprotein D and lipocalin family protein compare
H281DRAFT_03303 +1.0 2.5 NAD+ synthase (glutamine-hydrolysing) compare
H281DRAFT_06343 +1.0 3.2 transcriptional regulator, AsnC family compare
H281DRAFT_04269 +1.0 5.8 L-glutamate ABC transporter membrane protein /L-aspartate ABC transporter membrane protein compare
H281DRAFT_05210 +1.0 1.2 Sugar phosphate isomerase/epimerase compare
H281DRAFT_05221 +1.0 2.4 Saccharopine dehydrogenase, NADP-dependent compare
H281DRAFT_05724 +1.0 4.4 3-oxo-5,6-didehydrosuberyl-CoA semialdehyde dehydrogenase PaaZ (EC:1.2.1.91) (from data) compare
H281DRAFT_03314 +1.0 1.3 hypothetical protein compare
H281DRAFT_04228 +1.0 5.5 homodimeric glycerol 3-phosphate dehydrogenase (quinone) compare
H281DRAFT_01766 +1.0 1.4 cytochrome c oxidase subunit 2 compare
H281DRAFT_05816 +1.0 7.4 soluble lytic murein transglycosylase compare
H281DRAFT_01825 +1.0 2.0 Outer membrane protein (porin) compare
H281DRAFT_00285 +1.0 2.2 PhnB protein compare
H281DRAFT_04947 +1.0 2.1 putative spermidine/putrescine transport system substrate-binding protein compare
H281DRAFT_04931 +1.0 1.6 Surfactin synthase thioesterase subunit compare
H281DRAFT_00946 +0.9 2.6 protein-tyrosine phosphatase compare
H281DRAFT_00896 +0.9 1.4 ATP-dependent Clp protease proteolytic subunit ClpP compare
H281DRAFT_01075 +0.9 3.0 benzoate 1,2-dioxygenase, alpha subunit compare
H281DRAFT_03440 +0.9 1.5 PAP2 superfamily protein compare
H281DRAFT_01880 +0.9 1.6 two component transcriptional regulator, LuxR family compare
H281DRAFT_00419 +0.9 1.9 transcriptional regulator, LacI family compare
H281DRAFT_05021 +0.9 1.1 Response regulator compare
H281DRAFT_02905 +0.9 1.5 L-lactate dehydrogenase complex protein LldE compare
H281DRAFT_06253 +0.9 3.8 cell division protein ZapD compare
H281DRAFT_04229 +0.9 5.3 glycerol kinase compare
H281DRAFT_02702 +0.9 2.3 dihydroxyacetone kinase DhaK subunit compare
H281DRAFT_00927 +0.9 4.0 UPF0755 protein compare
H281DRAFT_05399 +0.9 1.5 isoquinoline 1-oxidoreductase, alpha subunit compare
H281DRAFT_03296 +0.9 1.8 hypothetical protein compare
H281DRAFT_00379 +0.9 1.1 dihydroorotate oxidase B, catalytic subunit /dihydrouracil dehydrogenase (NAD+) /dihydropyrimidine dehydrogenase (NADP+) compare
H281DRAFT_06474 +0.9 1.6 amino acid ABC transporter membrane protein 1, PAAT family compare
H281DRAFT_00706 +0.9 1.3 outer membrane protein compare
H281DRAFT_05456 +0.9 2.8 2-hydroxy-6-oxonona-2,4-dienedioate hydrolase compare
H281DRAFT_06070 +0.9 2.8 FimV C-terminal domain-containing protein compare
H281DRAFT_02599 +0.9 2.3 hypothetical protein compare
H281DRAFT_05753 +0.9 4.5 flagellar biosynthesis protein FlhA compare
H281DRAFT_00298 +0.9 2.1 hypothetical protein compare
H281DRAFT_05763 +0.9 3.8 flagellar basal-body rod protein FlgC compare
H281DRAFT_01231 +0.9 1.6 hypothetical protein compare
H281DRAFT_01689 +0.9 2.4 transcriptional regulator, AraC family with amidase-like domain compare
H281DRAFT_05764 +0.9 2.6 flagellar basal-body rod modification protein FlgD compare
H281DRAFT_02058 +0.9 1.2 cholesterol transport system auxiliary component compare
H281DRAFT_02007 +0.9 6.2 phosphoenolpyruvate--protein phosphotransferase compare
H281DRAFT_03147 +0.9 1.2 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA compare
H281DRAFT_03220 +0.9 0.9 4-hydroxy-tetrahydrodipicolinate synthase compare
H281DRAFT_02503 +0.8 2.1 Peroxiredoxin compare
H281DRAFT_04924 +0.8 3.9 iron complex outermembrane recepter protein compare
H281DRAFT_02349 +0.8 2.4 general secretion pathway protein J compare
H281DRAFT_04250 +0.8 2.7 DNA-binding protein Fis compare
H281DRAFT_01391 +0.8 1.7 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ compare
H281DRAFT_05775 +0.8 3.9 flagellar biosynthetic protein FliQ compare
H281DRAFT_00470 +0.8 4.4 murein-DD-endopeptidase. Serine peptidase. MEROPS family S11 compare
H281DRAFT_04386 +0.8 2.4 hypothetical protein compare
H281DRAFT_01007 +0.8 1.6 hypothetical protein compare
H281DRAFT_00895 +0.8 2.3 trigger factor compare
H281DRAFT_02753 +0.8 1.4 Predicted dehydrogenase compare
H281DRAFT_02985 +0.8 1.5 copper chaperone compare
H281DRAFT_01403 +0.8 2.1 hypothetical protein compare
H281DRAFT_01225 +0.8 1.4 L-rhamnose mutarotase compare
H281DRAFT_05762 +0.8 2.0 flagellar basal-body rod protein FlgB compare
H281DRAFT_03713 +0.8 2.0 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_05901 +0.8 1.1 Cupin domain-containing protein compare
H281DRAFT_03820 +0.8 1.1 methylated-DNA-[protein]-cysteine S-methyltransferase compare
H281DRAFT_00487 +0.8 1.3 bacterial peptide chain release factor 2 (bRF-2) compare
H281DRAFT_04002 +0.8 1.2 tRNA_Arg_ACG compare
H281DRAFT_03725 +0.8 1.6 hypothetical protein compare
H281DRAFT_03061 +0.8 1.3 hypothetical protein compare
H281DRAFT_06385 +0.8 1.2 hypothetical protein compare
H281DRAFT_06165 +0.8 1.5 hypothetical protein compare
H281DRAFT_01838 +0.8 2.1 regulator RcnB of Ni and Co efflux compare
H281DRAFT_04877 +0.8 1.9 Predicted dithiol-disulfide oxidoreductase, DUF899 family compare
H281DRAFT_05756 +0.8 2.0 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG compare
H281DRAFT_05122 +0.8 3.8 host factor-I protein compare
H281DRAFT_02351 +0.8 2.8 general secretion pathway protein H compare
H281DRAFT_06177 +0.8 5.3 hypothetical protein compare
H281DRAFT_03765 +0.8 2.7 Uncharacterized conserved protein YgbK, DUF1537 family compare
H281DRAFT_04150 +0.8 1.6 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_05005 +0.8 1.3 type III secretion protein HrpB1 compare
H281DRAFT_04743 +0.8 1.8 MFS transporter, DHA1 family, arabinose polymer transporter compare
H281DRAFT_04051 +0.8 1.2 transcriptional regulator, RpiR family compare
H281DRAFT_02600 +0.8 1.3 Undecaprenyl-diphosphatase (EC 3.6.1.27) compare
H281DRAFT_05123 +0.8 1.1 hypothetical protein compare
H281DRAFT_06335 +0.7 1.3 peptide/nickel transport system permease protein compare
H281DRAFT_06269 +0.7 1.3 hypoxanthine phosphoribosyltransferase compare
H281DRAFT_02166 +0.7 3.0 High potential iron-sulfur protein compare
H281DRAFT_02736 +0.7 1.8 uncharacterized peroxidase-related enzyme compare
H281DRAFT_04456 +0.7 2.4 5-deoxyglucuronate isomerase compare
H281DRAFT_06002 +0.7 2.5 NADPH:quinone reductase compare
H281DRAFT_05289 +0.7 1.9 N-hydroxyarylamine O-acetyltransferase compare
H281DRAFT_01812 +0.7 1.3 Short-chain dehydrogenase compare
H281DRAFT_05540 +0.7 1.9 transcriptional regulator, LacI family compare
H281DRAFT_01246 +0.7 0.9 hypothetical protein compare
H281DRAFT_05536 +0.7 2.2 hypothetical protein compare
H281DRAFT_04360 +0.7 2.7 GTP-binding protein LepA compare
H281DRAFT_05956 +0.7 2.0 Predicted arabinose efflux permease, MFS family compare
H281DRAFT_00794 +0.7 1.2 hypothetical protein compare
H281DRAFT_04607 +0.7 1.7 hypothetical protein compare
H281DRAFT_03768 +0.7 3.5 Predicted arabinose efflux permease, MFS family compare
H281DRAFT_00748 +0.7 1.4 Uncharacterized protein, UPF0303 family compare
H281DRAFT_05389 +0.7 1.2 protein of unknown function (DUF3331) compare
H281DRAFT_01310 +0.7 1.7 ribulose-5-phosphate 3-epimerase (EC 5.1.3.1) compare
H281DRAFT_03027 +0.7 2.3 phosphonopyruvate decarboxylase compare
H281DRAFT_03896 +0.7 2.0 hypothetical protein compare
H281DRAFT_00875 +0.7 2.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_05998 +0.7 1.9 hypothetical protein compare
H281DRAFT_04594 +0.7 3.2 putative oxepin-CoA hydrolase (EC 3.3.2.12) (from data) compare
H281DRAFT_02864 +0.7 1.8 precorrin-8X methylmutase compare
H281DRAFT_05701 +0.7 2.8 glycerol 3-phosphate ABC transporter ATP-binding protein compare
H281DRAFT_02369 +0.7 2.1 Protein of unknown function (DUF3717) compare
H281DRAFT_06511 +0.7 0.9 reactive intermediate/imine deaminase compare
H281DRAFT_03739 +0.7 2.7 Enoyl-CoA hydratase/carnithine racemase compare
H281DRAFT_05914 +0.7 1.3 hypothetical protein compare
H281DRAFT_01483 +0.7 1.3 hypothetical protein compare
H281DRAFT_01612 +0.7 2.4 2OG-Fe(II) oxygenase superfamily protein compare
H281DRAFT_03411 +0.7 1.9 hypothetical protein compare
H281DRAFT_00240 +0.7 4.6 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_06567 +0.7 1.0 hypothetical protein compare
H281DRAFT_04878 +0.7 1.7 transcriptional regulator, ArsR family compare
H281DRAFT_06134 +0.7 1.9 hypothetical protein compare
H281DRAFT_05784 +0.7 1.9 flagellar assembly protein FliH compare
H281DRAFT_03869 +0.7 1.7 hypothetical protein compare
H281DRAFT_00348 +0.7 2.0 membrane fusion protein, multidrug efflux system compare
H281DRAFT_05293 +0.7 1.1 amino acid ABC transporter ATP-binding protein, PAAT family compare
H281DRAFT_04990 +0.7 2.1 type III secretion translocon protein HrpF compare
H281DRAFT_03232 +0.7 2.8 carbohydrate ABC transporter membrane protein 2, CUT1 family compare
H281DRAFT_03502 +0.7 1.2 2-aminoethylphosphonate transport system permease protein compare
H281DRAFT_05010 +0.7 1.2 type III secretion protein R compare
H281DRAFT_00757 +0.7 0.8 hypothetical protein compare
H281DRAFT_04226 +0.7 0.9 hypothetical protein compare
H281DRAFT_05752 +0.7 3.3 flagellar biosynthetic protein FlhB compare
H281DRAFT_06032 +0.7 1.0 peroxiredoxin, Ohr subfamily compare
H281DRAFT_04958 +0.7 1.5 glutamate racemase compare
H281DRAFT_03610 +0.7 2.6 squalene-hopene/tetraprenyl-beta-curcumene cyclase compare
H281DRAFT_05286 +0.7 1.8 transcriptional regulator, LysR family compare
H281DRAFT_03293 +0.7 0.9 Ferritin-like metal-binding protein YciE compare
H281DRAFT_00359 +0.7 1.2 Acyl-CoA dehydrogenase compare
H281DRAFT_05770 +0.7 2.7 flagellar protein FlgJ compare
H281DRAFT_00752 +0.7 2.2 hypothetical protein compare
H281DRAFT_01237 +0.7 1.3 DnaJ-class molecular chaperone with C-terminal Zn finger domain compare
H281DRAFT_06135 +0.7 1.0 hypothetical protein compare
H281DRAFT_05809 +0.7 2.1 Uncharacterized membrane protein compare
H281DRAFT_01534 +0.7 2.3 tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase compare
H281DRAFT_06010 +0.7 2.3 hypothetical protein compare
H281DRAFT_02162 +0.7 1.5 hypothetical protein compare
H281DRAFT_03351 +0.7 1.6 transcriptional regulator, IclR family compare
H281DRAFT_01467 +0.6 2.1 hypothetical protein compare
H281DRAFT_06369 +0.6 1.9 tight adherence protein B compare
H281DRAFT_06477 +0.6 1.1 transcriptional regulator, AraC family compare
H281DRAFT_01600 +0.6 2.1 Permease of the drug/metabolite transporter (DMT) superfamily compare
H281DRAFT_06268 +0.6 2.5 Small neutral amino acid transporter SnatA, MarC family compare
H281DRAFT_03242 +0.6 2.7 Predicted dithiol-disulfide isomerase, DsbA family compare
H281DRAFT_05804 +0.6 3.2 dipeptide transport system permease protein compare
H281DRAFT_03883 +0.6 1.5 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
H281DRAFT_04008 +0.6 2.0 RNAse PH compare
H281DRAFT_03050 +0.6 1.7 Mannose-6-phosphate isomerase, cupin superfamily compare
H281DRAFT_02054 +0.6 3.5 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 compare
H281DRAFT_00731 +0.6 1.0 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_01675 +0.6 2.2 PAS/PAC sensor hybrid histidine kinase (EC 2.7.13.3) compare
H281DRAFT_04007 +0.6 3.0 TIGR00255 family protein compare
H281DRAFT_05294 +0.6 1.2 histidine ammonia-lyase compare
H281DRAFT_03488 +0.6 1.7 Predicted amidohydrolase compare
H281DRAFT_06069 +0.6 1.9 tRNA pseudouridine38-40 synthase compare
H281DRAFT_02888 +0.6 1.1 hypothetical protein compare
H281DRAFT_06089 +0.6 1.2 hypothetical protein compare
H281DRAFT_00950 +0.6 1.3 Glycosyltransferase involved in cell wall bisynthesis compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source 2'-Deoxyinosine in Paraburkholderia bryophila 376MFSha3.1

For carbon source 2'-Deoxyinosine across organisms