Experiment set4IT073 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Sodium acetate 68 mM

200 most important genes:

  gene name fitness t score description  
AO353_22685 -3.8 -2.6 peroxidase compare
AO353_02005 -3.7 -2.5 hypothetical protein compare
AO353_07315 -3.4 -3.2 rRNA methyltransferase compare
AO353_21625 -3.2 -2.2 Fe/S biogenesis protein NfuA compare
AO353_06335 -3.2 -15.8 AMP nucleosidase compare
AO353_04825 -3.0 -6.5 hypothetical protein compare
AO353_18540 -2.9 -2.7 pseudouridine synthase compare
AO353_04840 -2.8 -9.6 RND transporter compare
AO353_14940 -2.6 -3.5 malate:quinone oxidoreductase compare
AO353_11850 -2.6 -5.5 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_12500 -2.6 -2.5 shikimate kinase compare
AO353_04830 -2.5 -6.1 required for acetate efflux, together with NodT, MFP and FUSC proteins (AO353_04840, AO353_04825, and AO353_04835) (from data) compare
AO353_03795 -2.5 -4.6 fumarate hydratase compare
AO353_04835 -2.5 -10.9 fusaric acid resistance protein compare
AO353_11075 -2.4 -14.9 acetyl-CoA hydrolase conserved
AO353_20170 -2.4 -5.3 trigger factor compare
AO353_14220 -2.3 -1.5 ribosomal large subunit pseudouridine synthase D compare
AO353_05625 -2.2 -2.2 transcription elongation factor GreA compare
AO353_22800 -2.2 -3.5 sulfite reductase compare
AO353_15455 -2.2 -12.7 cytochrome o ubiquinol oxidase subunit I compare
AO353_00430 -2.2 -4.0 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_11730 -2.2 -9.0 glutamate--cysteine ligase compare
AO353_08110 -2.1 -5.2 glutathione synthetase compare
AO353_00310 -2.1 -8.9 transaldolase compare
AO353_03360 -2.0 -7.9 glucose-6-phosphate dehydrogenase compare
AO353_08600 -2.0 -4.5 TetR family transcriptional regulator compare
AO353_15460 -2.0 -7.0 cytochrome o ubiquinol oxidase subunit III compare
AO353_00825 -2.0 -4.0 porin compare
AO353_06495 -2.0 -5.3 gamma-glutamyl phosphate reductase compare
AO353_11750 -2.0 -2.6 ATPase compare
AO353_04845 -2.0 -10.3 LysR family transcriptional regulator compare
AO353_13225 -2.0 -3.6 50S ribosomal protein L9 compare
AO353_15470 -1.9 -11.1 protoheme IX farnesyltransferase compare
AO353_09240 -1.9 -2.9 acetylglutamate kinase compare
AO353_02555 -1.9 -11.2 histidine kinase compare
AO353_09905 -1.9 -8.6 phosphate-binding protein compare
AO353_20185 -1.9 -6.2 DNA-binding protein compare
AO353_16940 -1.9 -5.5 deoxycytidine triphosphate deaminase compare
AO353_12115 -1.9 -3.2 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_15465 -1.8 -6.0 cytochrome C oxidase compare
AO353_03615 -1.8 -3.3 cold-shock protein compare
AO353_06455 -1.8 -2.9 D-alanyl-D-alanine carboxypeptidase compare
AO353_14370 -1.8 -6.1 glucose-6-phosphate isomerase compare
AO353_27695 -1.8 -7.1 isocitrate dehydrogenase compare
AO353_04565 -1.8 -5.5 nucleoid-associated protein compare
AO353_09030 -1.8 -1.8 iron donor protein CyaY compare
AO353_06045 -1.8 -6.3 exodeoxyribonuclease V subunit beta compare
AO353_12105 -1.8 -6.0 peptidase S41 compare
AO353_05125 -1.7 -5.0 BolA family transcriptional regulator compare
AO353_23245 -1.7 -2.8 DNA-3-methyladenine glycosylase compare
AO353_05130 -1.7 -1.9 anti-anti-sigma factor compare
AO353_24130 -1.7 -3.2 hypothetical protein compare
AO353_15185 -1.6 -4.3 ATPase compare
AO353_13160 -1.6 -2.1 membrane protease HflC compare
AO353_06415 -1.6 -4.0 hypothetical protein compare
AO353_09315 -1.6 -8.3 LysR family transcriptional regulator compare
AO353_11775 -1.6 -6.6 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_26390 -1.6 -3.2 glyoxalase compare
AO353_20565 -1.5 -1.8 tRNA-Ala compare
AO353_08115 -1.5 -5.7 energy transducer TonB compare
AO353_07355 -1.5 -5.2 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_05690 -1.5 -3.4 SsrA-binding protein compare
AO353_01975 -1.5 -6.5 glycosyl transferase compare
AO353_05150 -1.5 -4.3 ABC transporter ATP-binding protein compare
AO353_02250 -1.5 -2.7 chorismate synthase compare
AO353_04520 -1.5 -4.8 elongation factor 4 compare
AO353_05420 -1.5 -2.3 peptide chain release factor 3 compare
AO353_14485 -1.5 -1.9 pseudouridine synthase compare
AO353_08880 -1.5 -2.3 exopolyphosphatase compare
AO353_06040 -1.5 -3.4 exodeoxyribonuclease V subunit alpha compare
AO353_06585 -1.5 -6.3 hypothetical protein compare
AO353_20425 -1.5 -2.8 ArsC family transcriptional regulator compare
AO353_19360 -1.4 -2.1 peroxiredoxin compare
AO353_13715 -1.4 -3.9 translation initiation factor Sui1 compare
AO353_03290 -1.4 -2.2 peptide deformylase compare
AO353_09260 -1.4 -5.7 ribonuclease PH compare
AO353_09250 -1.4 -2.9 exodeoxyribonuclease III compare
AO353_15905 -1.4 -5.6 outer membrane protein assembly factor BamB compare
AO353_12935 -1.4 -3.3 glycosyltransferase compare
AO353_25320 -1.4 -3.1 phosphoribosyl-dephospho-CoA transferase compare
AO353_10670 -1.4 -5.9 shikimate dehydrogenase compare
AO353_00660 -1.4 -2.4 transcriptional regulator compare
AO353_18780 -1.4 -5.5 cobyrinic acid a,c-diamide synthase compare
AO353_03590 -1.4 -3.6 crossover junction endodeoxyribonuclease RuvC compare
AO353_02885 -1.3 -2.9 flagellar biosynthesis protein FlgN compare
AO353_27720 -1.3 -4.1 cupin compare
AO353_06850 -1.3 -3.2 MFS transporter compare
AO353_02300 -1.3 -2.2 MarR family transcriptional regulator compare
AO353_01410 -1.3 -2.9 ribonuclease E compare
AO353_00750 -1.3 -3.8 GntR family transcriptional regulator compare
AO353_07075 -1.3 -4.4 elongation factor Tu compare
AO353_13140 -1.3 -4.2 tRNA dimethylallyltransferase compare
AO353_12880 -1.3 -2.0 ADP-heptose--LPS heptosyltransferase compare
AO353_06050 -1.3 -5.2 exodeoxyribonuclease V subunit gamma compare
AO353_08875 -1.3 -2.4 amino acid ABC transporter ATP-binding protein compare
AO353_09660 -1.3 -2.1 hypothetical protein compare
AO353_02100 -1.3 -3.0 phosphoglycolate phosphatase compare
AO353_13920 -1.3 -2.3 dihydroxyacetone kinase compare
AO353_14740 -1.3 -3.2 GTP-binding protein compare
AO353_26045 -1.2 -2.1 hypothetical protein compare
AO353_12345 -1.2 -1.8 twin-arginine protein translocation system subunit TatC compare
AO353_14115 -1.2 -4.8 gamma-glutamyl kinase compare
AO353_08685 -1.2 -5.8 N-acetylglutamate synthase compare
AO353_00695 -1.2 -6.3 diguanylate cyclase compare
AO353_28380 -1.2 -3.3 GntR family transcriptional regulator compare
AO353_02235 -1.2 -4.4 acireductone dioxygenase compare
AO353_03710 -1.2 -1.7 formyltetrahydrofolate deformylase compare
AO353_00610 -1.2 -1.9 cytochrome C oxidase Cbb3 compare
AO353_13580 -1.2 -3.4 copper resistance protein CopZ compare
AO353_18985 -1.2 -2.7 hypothetical protein compare
AO353_03515 -1.2 -1.5 cold-shock protein compare
AO353_04175 -1.2 -4.0 glycerol uptake facilitator GlpF compare
AO353_12420 -1.2 -2.8 predicted FeS cluster maintenance protein (from data) compare
AO353_15250 -1.2 -2.6 cytochrome B compare
AO353_20200 -1.2 -2.9 peptidylprolyl isomerase compare
AO353_06100 -1.2 -1.9 thymidylate synthase compare
AO353_00515 -1.2 -2.3 hypothetical protein compare
AO353_12130 -1.2 -4.4 preprotein translocase subunit SecB compare
AO353_20175 -1.1 -2.5 ATP-dependent Clp protease proteolytic subunit compare
AO353_02995 -1.1 -5.0 succinylglutamate desuccinylase compare
AO353_19290 -1.1 -2.6 molybdenum cofactor sulfurase compare
AO353_02070 -1.1 -4.5 prephenate dehydratase compare
AO353_11185 -1.1 -7.7 channel protein TolC compare
AO353_10445 -1.1 -1.5 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_18425 -1.1 -3.2 hypothetical protein compare
AO353_00495 -1.1 -1.7 DNA topoisomerase I compare
AO353_11190 -1.1 -7.4 ABC transporter compare
AO353_09000 -1.1 -3.7 argininosuccinate lyase compare
AO353_26830 -1.1 -2.9 histidine kinase compare
AO353_14775 -1.1 -4.4 hypothetical protein compare
AO353_07155 -1.1 -4.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_02480 -1.1 -5.7 peptidylprolyl isomerase compare
AO353_13685 -1.1 -3.5 3-dehydroquinate dehydratase compare
AO353_18890 -1.1 -3.5 cytochrome C compare
AO353_17035 -1.1 -4.2 hypothetical protein compare
AO353_10440 -1.1 -3.9 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO353_18135 -1.1 -1.7 hypothetical protein compare
AO353_14150 -1.0 -1.4 peptidylprolyl isomerase compare
AO353_05465 -1.0 -7.5 flavodoxin compare
AO353_15450 -1.0 -6.5 ubiquinol oxidase subunit II compare
AO353_04240 -1.0 -1.6 chemotaxis protein CheW compare
AO353_11180 -1.0 -8.8 large adhesive protein compare
AO353_02710 -1.0 -6.4 (p)ppGpp synthetase compare
AO353_04035 -1.0 -2.7 exclusion suppressor FxsA compare
AO353_15170 -1.0 -2.1 cytochrome D ubiquinol oxidase subunit III compare
AO353_15260 -1.0 -3.8 stringent starvation protein A compare
AO353_20815 -1.0 -1.8 LacI family transcriptional regulator compare
AO353_09890 -1.0 -3.3 phosphate ABC transporter ATP-binding protein compare
AO353_27000 -1.0 -1.7 hypothetical protein compare
AO353_01885 -1.0 -4.9 hypothetical protein compare
AO353_01995 -1.0 -6.9 hypothetical protein compare
AO353_10930 -1.0 -4.7 DNA polymerase I compare
AO353_00105 -1.0 -1.5 hypothetical protein compare
AO353_01985 -1.0 -5.6 hypothetical protein compare
AO353_09040 -1.0 -1.2 diaminopimelate epimerase compare
AO353_00330 -1.0 -5.1 hypothetical protein compare
AO353_10945 -1.0 -1.8 cytochrome C compare
AO353_10065 -1.0 -5.1 hypothetical protein compare
AO353_07290 -0.9 -5.2 mannose-1-phosphate guanylyltransferase compare
AO353_01970 -0.9 -5.8 hypothetical protein compare
AO353_08080 -0.9 -3.9 chemotaxis protein compare
AO353_05145 -0.9 -3.8 ABC transporter permease compare
AO353_21635 -0.9 -2.7 cobalamin biosynthesis protein CobE compare
AO353_26070 -0.9 -2.2 hypothetical protein compare
AO353_27930 -0.9 -3.0 LysR family transcriptional regulator compare
AO353_11170 -0.9 -5.5 hypothetical protein compare
AO353_04190 -0.9 -1.5 glycerol-3-phosphate dehydrogenase compare
AO353_19000 -0.9 -1.8 ABC transporter compare
AO353_21750 -0.9 -2.0 peptidylprolyl isomerase compare
AO353_16825 -0.9 -3.1 hypothetical protein compare
AO353_06320 -0.9 -2.8 AsnC family transcriptional regulator compare
AO353_13100 -0.9 -1.5 GTPase RsgA compare
AO353_11915 -0.9 -4.6 agmatine deiminase compare
AO353_04185 -0.9 -3.6 DeoR family transcriptional regulator compare
AO353_13200 -0.9 -5.9 exoribonuclease R compare
AO353_23440 -0.9 -1.3 hypothetical protein compare
AO353_02015 -0.9 -3.9 acetyltransferase compare
AO353_16415 -0.9 -5.7 beta-(1-3)-glucosyl transferase compare
AO353_01990 -0.9 -3.8 UDP-N-acetylglucosamine 2-epimerase compare
AO353_21990 -0.9 -2.7 cytochrome C compare
AO353_04180 -0.9 -4.6 glycerol kinase compare
AO353_24595 -0.9 -1.3 hypothetical protein compare
AO353_00590 -0.9 -3.4 cytochrome C oxidase Cbb3 compare
AO353_22075 -0.9 -2.7 hypothetical protein compare
AO353_10990 -0.9 -4.7 glutamate:protein symporter compare
AO353_08535 -0.9 -5.4 hypothetical protein compare
AO353_05520 -0.9 -3.7 nicotinate-nucleotide pyrophosphorylase compare
AO353_00655 -0.9 -4.9 coproporphyrinogen III oxidase compare
AO353_16835 -0.9 -0.8 LuxR family transcriptional regulator compare
AO353_09945 -0.9 -2.9 LysR family transcriptional regulator compare
AO353_13205 -0.9 -3.5 23S rRNA methyltransferase compare
AO353_27400 -0.9 -2.1 hypothetical protein compare
AO353_05135 -0.9 -4.7 toluene tolerance protein compare
AO353_12350 -0.9 -2.1 preprotein translocase compare
AO353_15725 -0.9 -2.7 hypothetical protein compare
AO353_09835 -0.8 -2.3 rubredoxin compare
AO353_02810 -0.8 -3.7 histidine kinase compare
AO353_25450 -0.8 -1.9 cyanate hydratase compare
AO353_12390 -0.8 -2.2 poly(3-hydroxyalkanoate) granule-associated protein PhaI compare
AO353_27300 -0.8 -4.2 phage tail protein compare


Specific Phenotypes

For 7 genes in this experiment

For stress Sodium acetate in Pseudomonas fluorescens FW300-N2E3

For stress Sodium acetate across organisms