Experiment set4IT073 for Pseudomonas fluorescens FW300-N1B4

Compare to:

L-Valine carbon source

200 most detrimental genes:

  gene name fitness t score description  
Pf1N1B4_2047 +2.1 5.3 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
Pf1N1B4_969 +1.5 14.1 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf1N1B4_2736 +1.4 3.2 ATP-dependent RNA helicase PA3950 compare
Pf1N1B4_731 +1.4 4.0 Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like compare
Pf1N1B4_3435 +1.3 2.8 ABC transporter for L-Arginine and L-Citrulline, ATPase component (from data) compare
Pf1N1B4_973 +1.3 11.9 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf1N1B4_1457 +1.3 8.2 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf1N1B4_971 +1.3 11.1 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf1N1B4_769 +1.3 6.7 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_1183 +1.3 10.2 Sodium-dependent transporter family protein compare
Pf1N1B4_3591 +1.2 7.1 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) compare
Pf1N1B4_3590 +1.2 7.1 hypothetical protein compare
Pf1N1B4_656 +1.2 7.5 Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) compare
Pf1N1B4_972 +1.2 11.3 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf1N1B4_1570 +1.2 4.4 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
Pf1N1B4_1466 +1.2 4.8 hypothetical protein compare
Pf1N1B4_1458 +1.2 7.5 Probable transcription regulator Mig-14 compare
Pf1N1B4_2102 +1.2 1.9 hypothetical protein compare
Pf1N1B4_1456 +1.1 7.1 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf1N1B4_5383 +1.1 7.9 hypothetical protein compare
Pf1N1B4_970 +1.1 8.5 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf1N1B4_1334 +1.1 1.8 FIG00955840: hypothetical protein compare
Pf1N1B4_1568 +1.1 4.1 Twin-arginine translocation protein TatB compare
Pf1N1B4_4402 +1.1 2.0 SoxH protein, homolog compare
Pf1N1B4_1115 +1.1 7.6 Dna binding response regulator PrrA (RegA) compare
Pf1N1B4_5109 +1.1 1.9 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases compare
Pf1N1B4_1335 +1.1 5.9 Copper metallochaperone, bacterial analog of Cox17 protein compare
Pf1N1B4_3006 +1.1 5.7 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf1N1B4_1465 +1.1 9.4 Carbamoyltransferase in large core OS assembly cluster compare
Pf1N1B4_5763 +1.1 2.4 Nitric oxide reductase activation protein NorQ compare
Pf1N1B4_3115 +1.1 6.7 RNA polymerase sigma factor RpoS compare
Pf1N1B4_1462 +1.0 8.6 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
Pf1N1B4_695 +1.0 2.2 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf1N1B4_901 +1.0 3.4 hypothetical protein compare
Pf1N1B4_291 +1.0 5.1 Major outer membrane lipoprotein I compare
Pf1N1B4_1469 +1.0 9.2 Heptose kinase WapQ, eukaryotic type compare
Pf1N1B4_2739 +1.0 1.0 acetyltransferase, GNAT family compare
Pf1N1B4_2024 +1.0 6.6 sodium/alanine transporter conserved
Pf1N1B4_1463 +1.0 6.7 hypothetical protein compare
Pf1N1B4_4687 +1.0 5.4 Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) compare
Pf1N1B4_2247 +1.0 2.4 FMN reductase (EC 1.5.1.29) compare
Pf1N1B4_2184 +1.0 5.7 Autolysis response regulater LytR compare
Pf1N1B4_157 +1.0 2.7 ThiJ/PfpI family protein compare
Pf1N1B4_3976 +1.0 5.4 Transmembrane regulator protein PrtR compare
Pf1N1B4_2224 +1.0 2.1 FIG00953390: hypothetical protein compare
Pf1N1B4_5435 +1.0 2.6 hypothetical protein compare
Pf1N1B4_407 +1.0 1.5 ADP-ribosylglycohydrolase YegU (EC 3.2.-.-) compare
Pf1N1B4_5031 +0.9 2.7 Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) compare
Pf1N1B4_3111 +0.9 1.5 tRNA pseudouridine 13 synthase (EC 4.2.1.-) compare
Pf1N1B4_4393 +0.9 1.1 Ferredoxin reductase compare
Pf1N1B4_41 +0.9 2.9 hypothetical protein compare
Pf1N1B4_5853 +0.9 2.0 Glutamine synthetase (EC 6.3.1.2), putative compare
Pf1N1B4_1721 +0.9 2.2 DNA-binding heavy metal response regulator compare
Pf1N1B4_623 +0.9 1.9 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Pf1N1B4_2433 +0.9 2.3 FIG00953108: hypothetical protein compare
Pf1N1B4_228 +0.9 2.3 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Pf1N1B4_3507 +0.9 7.1 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 compare
Pf1N1B4_4438 +0.9 1.7 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf1N1B4_5920 +0.9 2.0 Transcriptional regulator, AraC family compare
Pf1N1B4_4250 +0.9 2.0 Methyltransferase (EC 2.1.1.-) compare
Pf1N1B4_4571 +0.9 2.2 ADA regulatory protein / Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf1N1B4_3826 +0.9 5.5 Phosphoenolpyruvate synthase (EC 2.7.9.2) compare
Pf1N1B4_1461 +0.9 3.1 Protein fixF compare
Pf1N1B4_4019 +0.9 2.3 Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family compare
Pf1N1B4_4937 +0.9 2.8 Two-component hybrid sensor and regulator compare
Pf1N1B4_5282 +0.8 2.5 Phage protein compare
Pf1N1B4_290 +0.8 7.6 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_3715 +0.8 3.5 Cobalamin synthase compare
Pf1N1B4_4474 +0.8 1.4 transcription regulator protein compare
Pf1N1B4_1535 +0.8 2.7 hypothetical protein compare
Pf1N1B4_138 +0.8 1.7 Putative dipeptidase, pyoverdin biosynthesis PvdM compare
Pf1N1B4_4539 +0.8 1.8 Uncharacterized protein homologous to Paeru. PA2364 compare
Pf1N1B4_4894 +0.8 2.3 Nucleoside-diphosphate-sugar epimerases compare
Pf1N1B4_4029 +0.8 1.9 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_3800 +0.8 1.9 Enoyl-CoA hydratase/isomerase family protein compare
Pf1N1B4_2411 +0.8 2.1 FIG00953568: hypothetical protein compare
Pf1N1B4_1180 +0.8 1.4 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf1N1B4_1886 +0.8 3.3 FIG00956005: hypothetical protein compare
Pf1N1B4_4349 +0.8 2.1 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) compare
Pf1N1B4_2925 +0.8 2.0 hypothetical protein compare
Pf1N1B4_5439 +0.8 2.1 hypothetical protein compare
Pf1N1B4_2106 +0.8 2.0 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_1116 +0.8 6.2 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf1N1B4_5629 +0.8 2.9 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf1N1B4_2432 +0.8 1.8 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf1N1B4_54 +0.8 2.5 Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91) compare
Pf1N1B4_1464 +0.8 4.6 Glycosyl transferase compare
Pf1N1B4_1555 +0.7 5.2 Polyhydroxyalkanoic acid synthase compare
Pf1N1B4_292 +0.7 7.0 ErfK/YbiS/YcfS/YnhG family protein compare
Pf1N1B4_5283 +0.7 1.6 hypothetical protein compare
Pf1N1B4_2451 +0.7 2.9 Low-specificity L-threonine aldolase (EC 4.1.2.48) compare
Pf1N1B4_3514 +0.7 5.8 Sensor histidine kinase/response regulator compare
Pf1N1B4_5463 +0.7 1.9 hypothetical protein compare
Pf1N1B4_515 +0.7 1.9 DNA-binding response regulator GltR, controls specific porins for the entry of glucose compare
Pf1N1B4_4040 +0.7 2.0 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_218 +0.7 3.4 Periplasmic binding protein compare
Pf1N1B4_2456 +0.7 2.0 Sarcosine oxidase delta subunit (EC 1.5.3.1) compare
Pf1N1B4_5708 +0.7 2.1 Transcriptional regulator, TetR family compare
Pf1N1B4_2879 +0.7 3.2 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_4485 +0.7 1.6 membrane protein, putative compare
Pf1N1B4_4812 +0.7 2.0 Site-specific recombinase, phage integrase family compare
Pf1N1B4_5055 +0.7 2.2 (R)-3-hydroxydecanoyl-ACP:CoA transacylase PhaG (3-hydroxyacyl-CoA-acyl carrier protein transferase) (EC 2.4.1.-) compare
Pf1N1B4_688 +0.7 1.3 FIG00955483: hypothetical protein compare
Pf1N1B4_1569 +0.7 5.6 Twin-arginine translocation protein TatC compare
Pf1N1B4_3686 +0.7 4.3 Branched-chain amino acid transport system carrier protein compare
Pf1N1B4_1426 +0.7 3.1 hypothetical protein compare
Pf1N1B4_616 +0.7 1.9 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_483 +0.7 1.5 Metal-dependent hydrolase related to alanyl-tRNA synthetase compare
Pf1N1B4_3710 +0.7 2.5 L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) compare
Pf1N1B4_1475 +0.7 3.5 FIG00962376: hypothetical protein compare
Pf1N1B4_4869 +0.7 2.0 Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16) compare
Pf1N1B4_5658 +0.7 2.3 Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) compare
Pf1N1B4_4403 +0.7 1.5 NADH dehydrogenase (EC 1.6.99.3) compare
Pf1N1B4_4521 +0.7 1.9 Probable transmembrane protein compare
Pf1N1B4_5721 +0.7 1.6 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf1N1B4_288 +0.7 5.0 FIG00958794: hypothetical protein compare
Pf1N1B4_3325 +0.7 1.1 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf1N1B4_4755 +0.7 1.3 ribosomal protein S6 glutaminyl transferase related protein compare
Pf1N1B4_2206 +0.7 3.6 FIG139438: lipoprotein B compare
Pf1N1B4_3005 +0.7 4.9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf1N1B4_4604 +0.7 2.0 FMN reductase, NADPH-dependent compare
Pf1N1B4_4035 +0.7 1.1 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_5820 +0.7 1.6 Transcriptional regulator, Cro/CI family compare
Pf1N1B4_2544 +0.7 4.2 Phosphoglycolate phosphatase (EC 3.1.3.18) compare
Pf1N1B4_1095 +0.7 5.1 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Pf1N1B4_5793 +0.7 1.8 Protein RtcB compare
Pf1N1B4_2386 +0.7 2.7 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf1N1B4_65 +0.7 3.4 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf1N1B4_5609 +0.7 2.2 Sulfopyruvate decarboxylase - beta subunit (EC 4.1.1.79) compare
Pf1N1B4_620 +0.7 2.0 Glycine cleavage system H protein compare
Pf1N1B4_1610 +0.6 2.1 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf1N1B4_3149 +0.6 2.0 hypothetical protein compare
Pf1N1B4_5330 +0.6 1.3 hypothetical protein compare
Pf1N1B4_2177 +0.6 0.8 FIG00953342: hypothetical protein compare
Pf1N1B4_1388 +0.6 1.8 Azurin compare
Pf1N1B4_3275 +0.6 2.2 L-lysine permease compare
Pf1N1B4_3722 +0.6 1.5 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_3825 +0.6 2.0 FIG00959101: hypothetical protein compare
Pf1N1B4_3437 +0.6 3.0 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
Pf1N1B4_5891 +0.6 1.3 FIG00961753: hypothetical protein compare
Pf1N1B4_3134 +0.6 1.2 probable tail fiber assembly-like protein compare
Pf1N1B4_761 +0.6 1.3 FIG00954879: hypothetical protein compare
Pf1N1B4_3911 +0.6 2.2 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf1N1B4_3433 +0.6 4.2 ABC transporter for L-Arginine and L-Citrulline, permease component 2 (from data) compare
Pf1N1B4_3795 +0.6 1.2 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf1N1B4_3485 +0.6 1.2 hypothetical protein compare
Pf1N1B4_3742 +0.6 0.9 Oxidoreductase, zinc-binding compare
Pf1N1B4_5661 +0.6 3.7 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) compare
Pf1N1B4_538 +0.6 1.2 hypothetical protein compare
Pf1N1B4_3191 +0.6 1.0 FIG00953505: hypothetical protein compare
Pf1N1B4_751 +0.6 1.0 hypothetical protein compare
Pf1N1B4_4731 +0.6 1.4 Sigma-54 dependent transcriptional regulator compare
Pf1N1B4_5187 +0.6 1.0 5S RNA compare
Pf1N1B4_262 +0.6 5.5 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf1N1B4_4823 +0.6 1.7 Paraquat-inducible protein A compare
Pf1N1B4_5598 +0.6 1.3 hypothetical protein compare
Pf1N1B4_5136 +0.6 3.2 Carboxynorspermidine dehydrogenase compare
Pf1N1B4_2154 +0.6 1.5 hypothetical protein compare
Pf1N1B4_2413 +0.6 1.7 Permeases of the major facilitator superfamily compare
Pf1N1B4_3693 +0.6 2.7 Pirin compare
Pf1N1B4_3050 +0.6 2.5 FIG00958830: hypothetical protein compare
Pf1N1B4_4366 +0.6 1.3 hypothetical protein compare
Pf1N1B4_5653 +0.6 2.1 CobN component of cobalt chelatase involved in B12 biosynthesis compare
Pf1N1B4_13 +0.6 1.4 SAM-dependent methyltransferase YafE (UbiE paralog) compare
Pf1N1B4_2505 +0.6 3.4 Lysine 2-monooxygenase (EC 1.13.12.2) (from data) compare
Pf1N1B4_3346 +0.6 2.6 Protein YcgL compare
Pf1N1B4_3712 +0.6 3.9 Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) compare
Pf1N1B4_3612 +0.6 1.7 Flagellar hook-length control protein FliK compare
Pf1N1B4_4695 +0.6 1.3 hypothetical protein compare
Pf1N1B4_3613 +0.6 1.2 hypothetical protein compare
Pf1N1B4_5590 +0.6 1.4 Trans-feruloyl-CoA synthase (EC 6.2.1.34) compare
Pf1N1B4_5736 +0.6 1.7 Nitrate/nitrite transporter compare
Pf1N1B4_3605 +0.6 1.1 Flagellar motor switch protein FliG compare
Pf1N1B4_103 +0.6 2.2 Histidine permease YuiF compare
Pf1N1B4_4892 +0.6 1.8 Transcriptional regulator, AraC family compare
Pf1N1B4_2355 +0.6 2.4 type IV pili signal transduction protein PilI compare
Pf1N1B4_3413 +0.6 1.1 Transcriptional regulator, LysR family compare
Pf1N1B4_1869 +0.6 3.5 Zinc ABC transporter, inner membrane permease protein ZnuB compare
Pf1N1B4_3889 +0.6 1.2 hypothetical protein compare
Pf1N1B4_2794 +0.6 1.4 FIG00953595: hypothetical protein compare
Pf1N1B4_876 +0.6 1.8 Magnesium and cobalt efflux protein CorC compare
Pf1N1B4_4038 +0.6 1.1 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_2229 +0.6 4.9 Xaa-Pro aminopeptidase (EC 3.4.11.9) compare
Pf1N1B4_126 +0.6 1.2 Pirin compare
Pf1N1B4_700 +0.6 2.7 LysR-family transcriptional regulator clustered with PA0057 compare
Pf1N1B4_1351 +0.6 1.9 Tabtoxin resistance protein compare
Pf1N1B4_5831 +0.6 2.1 SAM-dependent methyltransferases compare
Pf1N1B4_5601 +0.6 2.0 FIG00966546: hypothetical protein compare
Pf1N1B4_4043 +0.6 1.5 Type II and III secretion system family protein compare
Pf1N1B4_3316 +0.6 1.6 Tricarboxylate transport transcriptional regulator TctD compare
Pf1N1B4_5803 +0.6 2.0 Catechol 1,2-dioxygenase (EC 1.13.11.1) compare
Pf1N1B4_3129 +0.6 0.9 Prophage baseplate assembly protein V compare
Pf1N1B4_2244 +0.6 1.3 Taurine-binding periplasmic protein TauA compare
Pf1N1B4_4612 +0.6 1.1 FIG00954117: hypothetical protein compare
Pf1N1B4_5870 +0.6 1.2 VgrG protein compare
Pf1N1B4_1041 +0.6 3.1 GTP cyclohydrolase I (EC 3.5.4.16) type 1 compare
Pf1N1B4_77 +0.6 1.8 FIG00956064: hypothetical protein compare
Pf1N1B4_2357 +0.6 3.8 type IV pilus biogenesis protein PilJ compare
Pf1N1B4_5542 +0.6 1.4 hypothetical protein compare
Pf1N1B4_107 +0.6 2.1 FIG00857858: hypothetical protein compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source L-Valine in Pseudomonas fluorescens FW300-N1B4

For carbon source L-Valine across organisms