Experiment set4IT073 for Vibrio cholerae E7946 ATCC 55056

Compare to:

ICP1_phage_235.3_MOI_rep2

200 most important genes:

  gene name fitness t score description  
CSW01_13305 -4.2 -2.5 shikimate kinase compare
CSW01_07750 -4.2 -1.0 hypothetical protein compare
CSW01_01485 -4.1 -2.8 transcriptional regulator compare
CSW01_14680 -4.0 -1.0 aminotransferase compare
CSW01_12365 -3.9 -2.7 inorganic phosphate transporter compare
CSW01_11555 -3.8 -4.5 riboflavin synthase compare
CSW01_11560 -3.7 -4.4 riboflavin biosynthesis protein RibD compare
CSW01_13285 -3.6 -3.5 ribulose-phosphate 3-epimerase compare
CSW01_12005 -3.6 -2.5 aerobic respiration two-component sensor histidine kinase ArcB compare
CSW01_00560 -3.3 -8.8 DNA polymerase I compare
CSW01_03210 -3.3 -17.2 iron ABC transporter permease compare
CSW01_03795 -3.3 -2.0 phosphate ABC transporter ATP-binding protein compare
CSW01_03215 -3.2 -14.4 ABC transporter ATP-binding protein compare
CSW01_01490 -3.2 -5.1 Fis family transcriptional regulator compare
CSW01_17585 -3.2 -1.1 periplasmic nitrate reductase electron transfer subunit compare
CSW01_03980 -3.0 -8.7 IMP dehydrogenase compare
CSW01_00015 -3.0 -4.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
CSW01_03205 -3.0 -7.4 iron ABC transporter substrate-binding protein compare
CSW01_11730 -3.0 -4.0 2-dehydropantoate 2-reductase compare
CSW01_12320 -2.9 -5.5 3',5'-cyclic-AMP phosphodiesterase compare
CSW01_03325 -2.9 -4.7 porin compare
CSW01_10290 -2.9 -6.1 cytochrome c biogenesis ATP-binding export protein CcmA compare
CSW01_05575 -2.8 -2.0 phosphate acetyltransferase compare
CSW01_06380 -2.8 -3.3 GTP cyclohydrolase II compare
CSW01_14055 -2.8 -6.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
CSW01_00450 -2.7 -1.9 SCP2 domain-containing protein compare
CSW01_03410 -2.7 -3.1 polyribonucleotide nucleotidyltransferase compare
CSW01_09720 -2.6 -2.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
CSW01_11565 -2.6 -1.9 transcriptional regulator NrdR compare
CSW01_19435 -2.5 -2.1 hypothetical protein compare
CSW01_02875 -2.4 -6.8 DNA recombination/repair protein RecA compare
CSW01_05275 -2.3 -1.4 hypothetical protein compare
CSW01_09420 -2.2 -2.0 DUF2062 domain-containing protein compare
CSW01_06035 -2.2 -1.6 hypothetical protein compare
CSW01_02755 -2.2 -1.6 glutamyl-tRNA amidotransferase compare
CSW01_13805 -2.1 -5.2 Hsp33 family molecular chaperone HslO compare
CSW01_18730 -2.1 -1.7 DUF406 domain-containing protein compare
CSW01_04820 -2.1 -8.6 serine hydroxymethyltransferase compare
CSW01_18495 -2.0 -1.6 cytochrome bd-I oxidase subunit CydX compare
CSW01_00095 -2.0 -2.9 hypothetical protein compare
CSW01_12680 -2.0 -6.0 cytosol aminopeptidase compare
CSW01_10255 -2.0 -1.5 cytochrome c-type biogenesis protein CcmH compare
CSW01_03695 -2.0 -6.4 ribosomal large subunit pseudouridine synthase D compare
CSW01_02490 -2.0 -7.9 glutathione synthetase compare
CSW01_07060 -2.0 -3.0 TetR/AcrR family transcriptional regulator compare
CSW01_18635 -1.9 -4.9 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) compare
CSW01_05065 -1.9 -4.6 N-acetylglucosamine repressor compare
CSW01_13635 -1.9 -8.3 thiol:disulfide interchange protein DsbD compare
CSW01_12885 -1.9 -6.4 fructose 1,6-bisphosphatase compare
CSW01_02530 -1.9 -6.2 D-erythrose-4-phosphate dehydrogenase compare
CSW01_17275 -1.9 -0.9 large conductance mechanosensitive channel protein MscL compare
CSW01_08520 -1.9 -1.2 hypothetical protein compare
CSW01_09525 -1.8 -2.1 DNA translocase FtsK compare
CSW01_05580 -1.8 -5.5 acetate kinase compare
CSW01_18350 -1.8 -1.7 cell division protein DedD compare
CSW01_11325 -1.8 -2.9 DUF3149 domain-containing protein compare
CSW01_05730 -1.8 -9.5 inosine/guanosine kinase compare
CSW01_14085 -1.7 -3.1 transcriptional regulator compare
CSW01_06585 -1.7 -2.1 fumarate hydratase compare
CSW01_10170 -1.7 -1.7 MarC family protein compare
CSW01_11785 -1.7 -2.5 exonuclease V subunit gamma compare
CSW01_07135 -1.7 -2.3 chromosome partitioning protein ParA compare
CSW01_02970 -1.7 -5.8 glutamate--cysteine ligase compare
CSW01_07580 -1.6 -1.1 hypothetical protein compare
CSW01_00500 -1.6 -10.1 glycerol-3-phosphate 1-O-acyltransferase compare
CSW01_07085 -1.6 -5.4 carboxypeptidase M32 compare
CSW01_17495 -1.6 -5.2 glycerol-3-phosphate dehydrogenase compare
CSW01_04900 -1.6 -4.3 magnesium and cobalt efflux protein CorC compare
CSW01_01875 -1.6 -2.2 hypothetical protein compare
CSW01_11215 -1.6 -3.8 flagellar hook assembly protein FlgD compare
CSW01_17325 -1.6 -4.7 transaldolase compare
CSW01_04135 -1.6 -2.9 apo-citrate lyase phosphoribosyl-dephospho-CoA transferase compare
CSW01_13420 -1.6 -2.5 elongation factor P--(R)-beta-lysine ligase compare
CSW01_12130 -1.5 -1.8 DUF721 domain-containing protein compare
CSW01_05165 -1.5 -1.3 electron transport complex subunit RsxC compare
CSW01_11145 -1.5 -3.3 hypothetical protein compare
CSW01_15680 -1.5 -1.5 DUF3265 domain-containing protein compare
CSW01_10440 -1.5 -2.4 succinate dehydrogenase flavoprotein subunit compare
CSW01_10875 -1.5 -4.6 redox-regulated ATPase YchF compare
CSW01_08705 -1.5 -2.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
CSW01_03785 -1.5 -2.7 phosphate ABC transporter permease compare
CSW01_11920 -1.5 -4.7 NupC/NupG family nucleoside CNT transporter compare
CSW01_09465 -1.5 -4.5 NAD(P)/FAD-dependent oxidoreductase compare
CSW01_10265 -1.4 -5.0 c-type cytochrome biogenesis protein CcmF compare
CSW01_10285 -1.4 -2.2 heme exporter protein CcmB compare
CSW01_13445 -1.4 -1.4 elongation factor P compare
CSW01_12465 -1.4 -3.9 elongation factor 4 compare
CSW01_10340 -1.4 -3.2 MinD/ParA family protein compare
CSW01_12665 -1.4 -2.3 RDD family protein compare
CSW01_12255 -1.4 -3.0 flavodoxin FldB compare
CSW01_04390 -1.4 -1.9 outer membrane protein assembly factor BamE compare
CSW01_11780 -1.4 -3.4 exodeoxyribonuclease V subunit beta compare
CSW01_16130 -1.3 -0.8 acetyltransferase compare
CSW01_00615 -1.3 -1.1 hypothetical protein compare
CSW01_00080 -1.3 -1.6 hypothetical protein compare
CSW01_02450 -1.3 -6.6 pyrroline-5-carboxylate reductase compare
CSW01_07195 -1.3 -1.8 cytochrome biogenesis protein compare
CSW01_09220 -1.3 -1.1 cyd operon protein YbgE compare
CSW01_07215 -1.3 -2.1 cytochrome-c oxidase, cbb3-type subunit III compare
CSW01_01125 -1.3 -4.7 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
CSW01_19620 -1.3 -2.2 delta-VPH compare
CSW01_11525 -1.3 -2.9 hypothetical protein compare
CSW01_00570 -1.3 -2.4 cytochrome c4 compare
CSW01_11535 -1.2 -3.2 thiamine-phosphate kinase compare
CSW01_06790 -1.2 -2.7 maleylacetoacetate isomerase compare
CSW01_00540 -1.2 -0.9 hypothetical protein compare
CSW01_00470 -1.2 -3.5 twin-arginine translocase subunit TatC compare
CSW01_02980 -1.2 -4.4 HlyC/CorC family transporter compare
CSW01_13810 -1.2 -4.6 phosphoenolpyruvate carboxykinase (ATP) compare
CSW01_00170 -1.2 -3.1 thiol:disulfide interchange protein DsbA compare
CSW01_06400 -1.2 -3.7 DUF1513 domain-containing protein compare
CSW01_17265 -1.2 -1.5 hypothetical protein compare
CSW01_08730 -1.2 -1.9 phage-shock protein compare
CSW01_08620 -1.2 -6.3 chromosome partition protein MukB compare
CSW01_00870 -1.2 -1.7 cytochrome c5 family protein compare
CSW01_05825 -1.1 -3.0 transcriptional regulator HexR compare
CSW01_06030 -1.1 -1.6 helicase compare
CSW01_05125 -1.1 -1.0 ribonuclease T compare
CSW01_05220 -1.1 -3.7 cyclic pyranopterin monophosphate synthase MoaC compare
CSW01_06020 -1.1 -1.9 transporter compare
CSW01_18775 -1.1 -1.9 hypothetical protein compare
CSW01_11220 -1.1 -2.1 flagellar basal body rod protein FlgC compare
CSW01_11225 -1.1 -4.2 flagellar basal body rod protein FlgB compare
CSW01_13415 -1.1 -1.8 rhodanese-like domain-containing protein compare
CSW01_12250 -1.1 -3.1 site-specific tyrosine recombinase XerD compare
CSW01_07615 -1.1 -2.8 DUF3306 domain-containing protein compare
CSW01_12750 -1.1 -2.2 BolA family transcriptional regulator compare
CSW01_07145 -1.1 -1.5 spermidine/putrescine ABC transporter substrate-binding protein compare
CSW01_01920 -1.1 -1.1 bacterioferritin compare
CSW01_00460 -1.1 -3.1 twin-arginine translocase subunit TatA compare
CSW01_00710 -1.1 -2.0 DUF4145 domain-containing protein compare
CSW01_10280 -1.1 -2.3 heme exporter protein C compare
CSW01_08055 -1.0 -2.0 amino acid ABC transporter substrate-binding protein compare
CSW01_10600 -1.0 -1.4 flagellar biosynthetic protein FliO compare
CSW01_09960 -1.0 -2.4 DUF1315 domain-containing protein compare
CSW01_07500 -1.0 -0.8 DUF2835 domain-containing protein compare
CSW01_04285 -1.0 -1.1 toxin coregulated pilus biosynthesis protein R compare
CSW01_09815 -1.0 -2.1 TetR/AcrR family transcriptional regulator compare
CSW01_00495 -1.0 -0.7 SOS-response transcriptional repressor compare
CSW01_04080 -1.0 -2.5 hypothetical protein compare
CSW01_16835 -1.0 -2.1 catabolite repressor/activator compare
CSW01_10260 -1.0 -2.3 thiol:disulfide interchange protein DsbE compare
CSW01_17340 -1.0 -2.2 23S rRNA methyltransferase compare
CSW01_02270 -1.0 -3.0 malate dehydrogenase compare
CSW01_04535 -1.0 -2.6 N-acetyltransferase compare
CSW01_13450 -1.0 -2.1 EF-P beta-lysylation protein EpmB compare
CSW01_18155 -1.0 -2.3 HAD family hydrolase compare
CSW01_05310 -1.0 -2.0 DUF3379 domain-containing protein compare
CSW01_01980 -1.0 -3.6 transcriptional regulator Zur compare
CSW01_10295 -1.0 -1.3 DUF2802 domain-containing protein compare
CSW01_08625 -1.0 -2.7 chromosome partition protein MukE compare
CSW01_00650 -1.0 -3.9 tyrosine recombinase XerC compare
CSW01_16255 -1.0 -3.2 hypothetical protein compare
CSW01_10270 -0.9 -1.5 cytochrome c-type biogenesis protein CcmE compare
CSW01_16455 -0.9 -2.7 DJ-1/PfpI family protein compare
CSW01_07440 -0.9 -1.1 DUF3634 domain-containing protein compare
CSW01_10035 -0.9 -0.9 YnhF family membrane protein compare
CSW01_14080 -0.9 -0.6 DUF3283 domain-containing protein compare
CSW01_12735 -0.9 -2.4 RidA family protein compare
CSW01_01820 -0.9 -2.9 N-acetylmuramoyl-L-alanine amidase compare
CSW01_14910 -0.9 -0.7 cold-shock protein compare
CSW01_04850 -0.9 -1.9 septal ring lytic transglycosylase RlpA compare
CSW01_03845 -0.9 -1.2 hypothetical protein compare
CSW01_03790 -0.9 -1.5 phosphate ABC transporter, permease protein PstA compare
CSW01_01515 -0.9 -1.9 type II 3-dehydroquinate dehydratase compare
CSW01_10590 -0.9 -1.1 flagellar biosynthetic protein FliQ compare
CSW01_02550 -0.9 -2.6 mechanosensitive ion channel protein compare
CSW01_00735 -0.9 -1.4 DUF1145 domain-containing protein compare
CSW01_14965 -0.9 -1.3 hypothetical protein compare
CSW01_06560 -0.9 -2.0 6-carboxytetrahydropterin synthase QueD compare
CSW01_14265 -0.9 -1.3 N-acetyltransferase compare
CSW01_02455 -0.9 -2.5 YggS family pyridoxal phosphate enzyme compare
CSW01_05070 -0.9 -4.0 N-acetylglucosamine-6-phosphate deacetylase compare
CSW01_10415 -0.9 -2.9 succinate--CoA ligase subunit alpha compare
CSW01_16730 -0.9 -2.1 glutathione S-transferase compare
CSW01_10375 -0.9 -1.3 HIT family protein compare
CSW01_07230 -0.9 -2.7 cytochrome-c oxidase, cbb3-type subunit I compare
CSW01_06015 -0.8 -3.1 NAD-dependent malic enzyme compare
CSW01_05880 -0.8 -2.6 alpha-L-glutamate ligase-like protein compare
CSW01_05320 -0.8 -1.6 hypothetical protein compare
CSW01_02200 -0.8 -2.9 septum formation inhibitor Maf compare
CSW01_17200 -0.8 -1.3 DUF333 domain-containing protein compare
CSW01_10750 -0.8 -2.1 outer membrane protein assembly factor BamC compare
CSW01_14780 -0.8 -1.5 cation:proton antiporter compare
CSW01_03950 -0.8 -2.4 hypothetical protein compare
CSW01_17745 -0.8 -1.2 diacylglycerol kinase compare
CSW01_03100 -0.8 -2.8 TetR/AcrR family transcriptional regulator compare
CSW01_13515 -0.8 -2.1 HslU--HslV peptidase proteolytic subunit compare
CSW01_19125 -0.8 -1.2 branched-chain amino acid ABC transporter compare
CSW01_01855 -0.8 -1.0 DUF2065 domain-containing protein compare
CSW01_04210 -0.8 -2.0 hypothetical protein compare
CSW01_18185 -0.8 -1.7 DEAD/DEAH box family ATP-dependent RNA helicase compare
CSW01_15930 -0.8 -2.8 hypothetical protein compare
CSW01_05700 -0.8 -1.8 DUF2878 domain-containing protein compare
CSW01_10020 -0.8 -4.2 ROK family protein compare
CSW01_06390 -0.8 -2.8 thiol oxidoreductase compare
CSW01_05670 -0.8 -2.0 protease HtpX compare
CSW01_06825 -0.8 -0.8 acylphosphatase compare
CSW01_11745 -0.8 -0.9 cysteine desulfurase sulfur acceptor subunit CsdE compare
CSW01_12590 -0.8 -1.9 TetR/AcrR family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Vibrio cholerae E7946 ATCC 55056 in phage experiments

For phage ICP1_phage across organisms