Experiment set4IT073 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Temperature shift 30_to_10; with MOPS

200 most important genes:

  gene name fitness t score description  
PFLU_RS02980 -4.0 -2.7 precorrin-8X methylmutase compare
PFLU_RS27640 -3.5 -3.7 alpha/beta fold hydrolase compare
PFLU_RS03995 -3.5 -2.4 hypothetical protein compare
PFLU_RS29875 -3.4 -18.3 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS23590 -3.4 -3.8 gluconokinase compare
PFLU_RS23070 -3.3 -2.1 50S ribosomal protein L32 compare
PFLU_RS29880 -3.3 -15.7 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS24330 -3.2 -7.0 phosphogluconate dehydratase compare
PFLU_RS25760 -3.1 -14.9 glucose-6-phosphate isomerase compare
PFLU_RS23585 -3.0 -10.3 GntP family permease compare
PFLU_RS25755 -2.9 -5.4 pantoate--beta-alanine ligase compare
PFLU_RS24125 -2.8 -9.3 cold-shock protein compare
PFLU_RS25735 -2.8 -9.0 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS29885 -2.8 -12.8 LysR family transcriptional regulator compare
PFLU_RS09055 -2.7 -5.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS18505 -2.7 -12.4 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS00180 -2.7 -8.9 tryptophan synthase subunit beta compare
PFLU_RS12980 -2.7 -10.5 nitrite/sulfite reductase compare
PFLU_RS12975 -2.6 -6.7 DUF934 domain-containing protein compare
PFLU_RS29515 -2.6 -10.9 RidA family protein compare
PFLU_RS24670 -2.6 -2.8 HigA family addiction module antidote protein compare
PFLU_RS00175 -2.5 -10.1 tryptophan synthase subunit alpha compare
PFLU_RS18670 -2.5 -1.7 NADH-quinone oxidoreductase subunit M compare
PFLU_RS23065 -2.4 -10.9 phosphate acyltransferase PlsX compare
PFLU_RS13540 -2.4 -4.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS04070 -2.4 -6.5 peptide chain release factor 3 compare
PFLU_RS26595 -2.4 -1.6 lipoprotein compare
PFLU_RS22095 -2.4 -16.8 GTP diphosphokinase compare
PFLU_RS02490 -2.3 -12.3 phosphoserine phosphatase SerB compare
PFLU_RS27635 -2.3 -9.4 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS21495 -2.3 -3.7 TlpA family protein disulfide reductase compare
PFLU_RS21240 -2.3 -2.1 hypothetical protein compare
PFLU_RS28965 -2.3 -10.6 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS01625 -2.3 -3.7 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS21300 -2.2 -5.3 cysteine hydrolase compare
PFLU_RS01605 -2.2 -7.7 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS27645 -2.2 -12.9 8-amino-7-oxononanoate synthase compare
PFLU_RS28655 -2.2 -13.3 HAD family hydrolase compare
PFLU_RS28195 -2.2 -13.7 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS00415 -2.2 -2.1 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS06055 -2.1 -2.0 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS29095 -2.1 -17.5 polyphosphate kinase 1 compare
PFLU_RS22070 -2.1 -5.4 phosphoribosylglycinamide formyltransferase compare
PFLU_RS28695 -2.1 -7.6 phosphoglycerate dehydrogenase compare
PFLU_RS22105 -2.1 -6.2 cysteine synthase CysM compare
PFLU_RS22740 -2.1 -6.7 phosphoadenylyl-sulfate reductase compare
PFLU_RS01645 -2.0 -11.1 S41 family peptidase compare
PFLU_RS04945 -2.0 -3.3 molybdopterin synthase catalytic subunit MoaE compare
PFLU_RS23725 -2.0 -12.0 glucose-6-phosphate dehydrogenase compare
PFLU_RS01610 -2.0 -10.8 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS27650 -1.9 -11.7 biotin synthase BioB compare
PFLU_RS01620 -1.9 -8.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS27630 -1.9 -4.7 dethiobiotin synthase compare
PFLU_RS20515 -1.9 -4.7 amidophosphoribosyltransferase compare
PFLU_RS25730 -1.8 -12.8 PAS domain S-box protein compare
PFLU_RS21425 -1.8 -5.4 lipid A biosynthesis lauroyl acyltransferase compare
PFLU_RS20565 -1.8 -11.8 3-isopropylmalate dehydrogenase compare
PFLU_RS04325 -1.7 -12.5 ribonuclease G compare
PFLU_RS07275 -1.7 -2.7 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS31275 -1.7 -1.4 hypothetical protein compare
PFLU_RS18645 -1.7 -2.8 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS28645 -1.7 -10.4 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS28165 -1.7 -9.5 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS26545 -1.7 -7.9 sel1 repeat family protein compare
PFLU_RS31755 -1.7 -1.8 hypothetical protein compare
PFLU_RS06320 -1.6 -2.9 OmpH family outer membrane protein compare
PFLU_RS20580 -1.6 -9.4 3-isopropylmalate dehydratase large subunit compare
PFLU_RS03645 -1.5 -9.9 tetratricopeptide repeat protein compare
PFLU_RS25740 -1.5 -5.3 polynucleotide adenylyltransferase PcnB compare
PFLU_RS29490 -1.5 -7.4 ribonuclease PH compare
PFLU_RS17950 -1.5 -1.4 hypothetical protein compare
PFLU_RS27475 -1.5 -6.3 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS25715 -1.5 -8.0 RNA polymerase-binding protein DksA compare
PFLU_RS24335 -1.5 -8.8 type I glyceraldehyde-3-phosphate dehydrogenase compare
PFLU_RS21825 -1.4 -7.2 ketoacyl-ACP synthase III compare
PFLU_RS08505 -1.4 -5.7 protease HtpX compare
PFLU_RS07665 -1.4 -1.5 type I DNA topoisomerase compare
PFLU_RS18635 -1.4 -2.7 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS23310 -1.3 -7.3 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS11505 -1.3 -1.8 ABC transporter substrate-binding protein compare
PFLU_RS23045 -1.3 -4.8 beta-ketoacyl-ACP synthase II compare
PFLU_RS01995 -1.3 -8.4 malate dehydrogenase compare
PFLU_RS13240 -1.3 -6.2 D-glycerate dehydrogenase compare
PFLU_RS28535 -1.3 -9.0 dihydroxy-acid dehydratase compare
PFLU_RS24765 -1.2 -9.9 2-isopropylmalate synthase compare
PFLU_RS24485 -1.2 -8.3 hypothetical protein compare
PFLU_RS19165 -1.2 -4.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS11415 -1.2 -2.4 protein glxC compare
PFLU_RS20575 -1.2 -4.2 3-isopropylmalate dehydratase small subunit compare
PFLU_RS02050 -1.2 -8.7 NAD(P)-binding protein compare
PFLU_RS15410 -1.2 -1.9 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS14805 -1.2 -2.0 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
PFLU_RS29090 -1.2 -5.9 exopolyphosphatase compare
PFLU_RS07725 -1.2 -3.2 Si-specific NAD(P)(+) transhydrogenase compare
PFLU_RS20845 -1.2 -1.5 hypothetical protein compare
PFLU_RS01900 -1.2 -4.8 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS18640 -1.2 -3.2 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS02625 -1.2 -6.9 ribonuclease R compare
PFLU_RS12635 -1.1 -1.8 conjugal transfer protein TraR compare
PFLU_RS27265 -1.1 -2.1 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor compare
PFLU_RS18625 -1.1 -4.7 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS25750 -1.1 -4.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS18615 -1.1 -2.0 NADH-quinone oxidoreductase subunit A compare
PFLU_RS20015 -1.1 -2.5 transporter compare
PFLU_RS20660 -1.1 -5.9 aspartate/tyrosine/aromatic aminotransferase compare
PFLU_RS25640 -1.1 -6.6 ketol-acid reductoisomerase compare
PFLU_RS07540 -1.1 -1.7 class II glutamine amidotransferase compare
PFLU_RS15610 -1.1 -3.8 helix-turn-helix transcriptional regulator compare
PFLU_RS25585 -1.0 -1.6 exodeoxyribonuclease V subunit alpha compare
PFLU_RS25360 -1.0 -3.9 glutamate 5-kinase compare
PFLU_RS26770 -1.0 -7.4 DedA family protein compare
PFLU_RS27465 -1.0 -2.9 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS01910 -1.0 -1.6 sterol-binding protein compare
PFLU_RS22195 -1.0 -3.1 DEAD/DEAH box helicase compare
PFLU_RS08600 -1.0 -2.5 glutaredoxin family protein compare
PFLU_RS03870 -1.0 -5.4 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
PFLU_RS02775 -1.0 -1.7 urease accessory protein UreF compare
PFLU_RS08155 -1.0 -2.9 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS22010 -1.0 -4.6 threonine-phosphate decarboxylase compare
PFLU_RS03610 -1.0 -4.4 redox-regulated ATPase YchF compare
PFLU_RS26735 -1.0 -5.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS03765 -1.0 -5.2 sulfate adenylyltransferase subunit CysD compare
PFLU_RS28690 -1.0 -6.9 FAD-binding oxidoreductase compare
PFLU_RS03970 -1.0 -4.9 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS18620 -1.0 -3.5 NADH-quinone oxidoreductase subunit B compare
PFLU_RS18665 -1.0 -2.7 NADH-quinone oxidoreductase subunit L compare
PFLU_RS11980 -1.0 -4.6 precorrin-6A synthase (deacetylating) compare
PFLU_RS16785 -1.0 -2.1 GAF domain-containing protein compare
PFLU_RS04565 -1.0 -1.0 TMEM165/GDT1 family protein compare
PFLU_RS02700 -1.0 -2.3 ammonia-dependent NAD(+) synthetase compare
PFLU_RS13365 -1.0 -1.4 hypothetical protein compare
PFLU_RS19635 -1.0 -2.8 SDR family oxidoreductase compare
PFLU_RS24025 -1.0 -6.4 quinolinate synthase NadA compare
PFLU_RS25865 -1.0 -2.0 YhbY family RNA-binding protein compare
PFLU_RS28895 -1.0 -1.1 DUF2388 domain-containing protein compare
PFLU_RS25225 -0.9 -5.2 disulfide bond formation protein B compare
PFLU_RS05960 -0.9 -2.2 NADH:flavin oxidoreductase/NADH oxidase compare
PFLU_RS04715 -0.9 -3.0 D-alanine--D-alanine ligase compare
PFLU_RS13045 -0.9 -4.1 AAA domain-containing protein compare
PFLU_RS03770 -0.9 -6.1 sulfate adenylyltransferase subunit CysN compare
PFLU_RS24825 -0.9 -2.5 Fe-S cluster assembly protein IscX compare
PFLU_RS31800 -0.9 -1.0 hypothetical protein compare
PFLU_RS23305 -0.9 -4.8 arginine N-succinyltransferase compare
PFLU_RS13300 -0.9 -1.5 DNA-directed RNA polymerase sigma-70 factor compare
PFLU_RS28650 -0.9 -3.7 RNA pyrophosphohydrolase compare
PFLU_RS25790 -0.9 -3.4 polyribonucleotide nucleotidyltransferase compare
PFLU_RS28385 -0.9 -5.5 homoserine O-acetyltransferase compare
PFLU_RS29310 -0.9 -1.1 accessory factor UbiK family protein compare
PFLU_RS28820 -0.9 -2.3 aliphatic sulfonates ABC transporter ATP-binding protein compare
PFLU_RS23380 -0.9 -0.9 HAD-IB family hydrolase compare
PFLU_RS06870 -0.9 -5.3 GNAT family N-acetyltransferase compare
PFLU_RS05885 -0.9 -3.2 recombinase RecA compare
PFLU_RS19170 -0.9 -2.5 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS18585 -0.9 -1.4 high frequency lysogenization protein HflD compare
PFLU_RS02355 -0.8 -3.3 GNAT family N-acetyltransferase compare
PFLU_RS30590 -0.8 -1.0 hypothetical protein compare
PFLU_RS17495 -0.8 -1.3 hypothetical protein compare
PFLU_RS28390 -0.8 -4.1 methionine biosynthesis protein MetW compare
PFLU_RS19175 -0.8 -4.0 trigger factor compare
PFLU_RS14395 -0.8 -2.0 DUF664 domain-containing protein compare
PFLU_RS02045 -0.8 -7.2 glutamate synthase large subunit compare
PFLU_RS05585 -0.8 -3.4 MtnX-like HAD-IB family phosphatase compare
PFLU_RS02215 -0.8 -1.5 hypothetical protein compare
PFLU_RS07650 -0.8 -6.0 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS25595 -0.8 -1.2 exodeoxyribonuclease V subunit gamma compare
PFLU_RS24320 -0.8 -3.0 response regulator transcription factor compare
PFLU_RS30160 -0.8 -1.6 ParB/RepB/Spo0J family partition protein compare
PFLU_RS06530 -0.8 -2.6 collagen-like triple helix repeat-containing protein compare
PFLU_RS30490 -0.8 -1.7 hypothetical protein compare
PFLU_RS06665 -0.8 -2.7 YkgJ family cysteine cluster protein compare
PFLU_RS22725 -0.8 -2.0 transcriptional regulator compare
PFLU_RS23755 -0.8 -5.3 sugar ABC transporter permease compare
PFLU_RS18530 -0.8 -2.7 DNA translocase FtsK compare
PFLU_RS10655 -0.8 -2.4 RcnB family protein compare
PFLU_RS31510 -0.8 -1.0 transcriptional regulator compare
PFLU_RS27620 -0.8 -6.2 acyl-CoA dehydrogenase compare
PFLU_RS22600 -0.8 -1.4 RNA polymerase sigma factor SigX compare
PFLU_RS14550 -0.8 -3.8 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS24095 -0.8 -1.7 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS27440 -0.8 -3.7 nucleotidyltransferase family protein compare
PFLU_RS01960 -0.7 -1.0 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS28270 -0.7 -1.3 triphosphoribosyl-dephospho-CoA synthase compare
PFLU_RS14450 -0.7 -1.1 AzlD domain-containing protein compare
PFLU_RS01955 -0.7 -4.0 DUF971 domain-containing protein compare
PFLU_RS04475 -0.7 -5.3 histidinol-phosphate transaminase compare
PFLU_RS29495 -0.7 -3.2 YicC family protein compare
PFLU_RS03535 -0.7 -1.8 YscO family type III secretion system apparatus protein compare
PFLU_RS25645 -0.7 -1.0 acetolactate synthase small subunit compare
PFLU_RS09980 -0.7 -6.0 peptidase S41 compare
PFLU_RS01615 -0.7 -2.1 DUF2164 domain-containing protein compare
PFLU_RS01285 -0.7 -0.9 HAMP domain-containing protein compare
PFLU_RS31185 -0.7 -3.1 hypothetical protein compare
PFLU_RS10355 -0.7 -2.0 DeoR family transcriptional regulator compare
PFLU_RS11475 -0.7 -0.8 histidine kinase compare
PFLU_RS25955 -0.7 -1.3 hypothetical protein compare
PFLU_RS17525 -0.7 -1.3 NUDIX domain-containing protein compare
PFLU_RS04220 -0.7 -3.8 FadR family transcriptional regulator compare
PFLU_RS29485 -0.7 -1.8 DUF4870 domain-containing protein compare
PFLU_RS20510 -0.7 -4.9 O-succinylhomoserine sulfhydrylase compare
PFLU_RS18420 -0.7 -1.0 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens SBW25-INTG in temperature shift experiments

For temperature shift D-Glucose across organisms