Experiment set4IT073 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

2'-Deoxyinosine 10 mM carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_04390 +2.6 18.9 ATP-binding cassette, subfamily B compare
H281DRAFT_04391 +2.3 16.0 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_00885 +1.8 6.5 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ compare
H281DRAFT_01111 +1.7 3.0 transcriptional regulator, DeoR family compare
H281DRAFT_02791 +1.6 2.5 apolipoprotein D and lipocalin family protein compare
H281DRAFT_01184 +1.6 1.9 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_01749 +1.5 2.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_05705 +1.5 2.4 hypothetical protein compare
H281DRAFT_04270 +1.5 8.2 L-glutamate-binding protein /L-aspartate-binding protein compare
H281DRAFT_01246 +1.5 2.1 hypothetical protein compare
H281DRAFT_06120 +1.3 1.4 hypothetical protein compare
H281DRAFT_03147 +1.3 2.1 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA compare
H281DRAFT_00255 +1.3 1.6 hypothetical protein compare
H281DRAFT_01436 +1.3 1.9 NTE family protein compare
H281DRAFT_02148 +1.3 3.5 cytochrome c compare
H281DRAFT_04219 +1.3 6.1 Cytochrome c553 compare
H281DRAFT_03790 +1.2 1.5 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
H281DRAFT_04269 +1.2 6.2 L-glutamate ABC transporter membrane protein /L-aspartate ABC transporter membrane protein compare
H281DRAFT_04220 +1.2 6.2 Cytochrome c, mono- and diheme variants compare
H281DRAFT_04008 +1.2 3.8 RNAse PH compare
H281DRAFT_06394 +1.1 2.6 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family compare
H281DRAFT_00285 +1.1 2.9 PhnB protein compare
H281DRAFT_02683 +1.1 0.8 xanthine dehydrogenase accessory factor compare
H281DRAFT_05816 +1.1 7.6 soluble lytic murein transglycosylase compare
H281DRAFT_06567 +1.1 1.2 hypothetical protein compare
H281DRAFT_04268 +1.1 6.9 L-glutamate ABC transporter membrane protein /L-aspartate ABC transporter membrane protein compare
H281DRAFT_04400 +1.1 7.3 membrane-bound lytic murein transglycosylase D compare
H281DRAFT_01838 +1.1 4.2 regulator RcnB of Ni and Co efflux compare
H281DRAFT_03460 +1.0 1.2 Protein of unknown function (DUF2950) compare
H281DRAFT_04937 +1.0 2.1 MFS transporter, DHA2 family, multidrug resistance protein compare
H281DRAFT_00927 +1.0 5.3 UPF0755 protein compare
H281DRAFT_06474 +1.0 1.9 amino acid ABC transporter membrane protein 1, PAAT family compare
H281DRAFT_06494 +1.0 1.7 transcriptional regulator, IclR family compare
H281DRAFT_06266 +1.0 3.6 putative (di)nucleoside polyphosphate hydrolase compare
H281DRAFT_04594 +1.0 4.5 putative oxepin-CoA hydrolase (EC 3.3.2.12) (from data) compare
H281DRAFT_00298 +1.0 2.5 hypothetical protein compare
H281DRAFT_01305 +1.0 2.3 hypothetical protein compare
H281DRAFT_06070 +1.0 2.2 FimV C-terminal domain-containing protein compare
H281DRAFT_00888 +1.0 2.4 phytoene synthase compare
H281DRAFT_01033 +1.0 1.4 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_02818 +1.0 2.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_02651 +1.0 1.4 transcriptional regulator, MerR family compare
H281DRAFT_01675 +1.0 3.8 PAS/PAC sensor hybrid histidine kinase (EC 2.7.13.3) compare
H281DRAFT_03314 +1.0 1.3 hypothetical protein compare
H281DRAFT_04229 +1.0 5.2 glycerol kinase compare
H281DRAFT_00895 +1.0 4.0 trigger factor compare
H281DRAFT_00470 +1.0 5.2 murein-DD-endopeptidase. Serine peptidase. MEROPS family S11 compare
H281DRAFT_04923 +1.0 3.4 iron complex transport system substrate-binding protein compare
H281DRAFT_05289 +1.0 2.8 N-hydroxyarylamine O-acetyltransferase compare
H281DRAFT_00757 +1.0 1.1 hypothetical protein compare
H281DRAFT_04929 +1.0 1.4 hypothetical protein compare
H281DRAFT_00946 +1.0 2.0 protein-tyrosine phosphatase compare
H281DRAFT_04228 +1.0 4.2 homodimeric glycerol 3-phosphate dehydrogenase (quinone) compare
H281DRAFT_01262 +1.0 1.8 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_05724 +0.9 5.0 3-oxo-5,6-didehydrosuberyl-CoA semialdehyde dehydrogenase PaaZ (EC:1.2.1.91) (from data) compare
H281DRAFT_01748 +0.9 3.7 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
H281DRAFT_06069 +0.9 2.5 tRNA pseudouridine38-40 synthase compare
H281DRAFT_02693 +0.9 1.8 transcriptional regulator, DeoR family compare
H281DRAFT_01253 +0.9 1.8 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_03192 +0.9 1.6 D-methionine transport system substrate-binding protein compare
H281DRAFT_04722 +0.9 1.9 Cell division and transport-associated protein TolQ compare
H281DRAFT_06576 +0.9 3.4 CheY chemotaxis protein or a CheY-like REC (receiver) domain compare
H281DRAFT_03220 +0.9 0.9 4-hydroxy-tetrahydrodipicolinate synthase compare
H281DRAFT_01474 +0.9 1.6 isoquinoline 1-oxidoreductase, alpha subunit compare
H281DRAFT_06003 +0.9 2.0 Pimeloyl-ACP methyl ester carboxylesterase compare
H281DRAFT_05012 +0.9 1.7 hypothetical protein compare
H281DRAFT_05351 +0.9 1.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_02508 +0.9 1.3 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_04876 +0.9 2.1 hypothetical protein compare
H281DRAFT_05540 +0.9 2.7 transcriptional regulator, LacI family compare
H281DRAFT_03915 +0.9 2.7 UDPglucose 6-dehydrogenase compare
H281DRAFT_01612 +0.9 3.0 2OG-Fe(II) oxygenase superfamily protein compare
H281DRAFT_01706 +0.9 1.6 transcriptional regulator, MarR family compare
H281DRAFT_03094 +0.9 1.1 transcriptional regulator, MarR family compare
H281DRAFT_02052 +0.9 1.3 hypothetical protein compare
H281DRAFT_06578 +0.9 3.6 NADP-dependent 3-hydroxy acid dehydrogenase YdfG compare
H281DRAFT_04201 +0.9 1.1 O-antigen ligase compare
H281DRAFT_01011 +0.9 1.3 Uncharacterized membrane protein YkgB compare
H281DRAFT_02007 +0.9 6.6 phosphoenolpyruvate--protein phosphotransferase compare
H281DRAFT_01085 +0.9 1.0 Membrane protein TerC, possibly involved in tellurium resistance compare
H281DRAFT_04997 +0.9 1.2 AraC-type DNA-binding protein compare
H281DRAFT_04869 +0.9 1.2 imidazolonepropionase compare
H281DRAFT_00130 +0.9 1.5 Predicted secreted protein compare
H281DRAFT_01024 +0.9 3.0 hypothetical protein compare
H281DRAFT_02355 +0.9 6.3 type II secretion system protein E (GspE) compare
H281DRAFT_02058 +0.8 1.2 cholesterol transport system auxiliary component compare
H281DRAFT_01095 +0.8 2.0 Glyoxylase, beta-lactamase superfamily II compare
H281DRAFT_03610 +0.8 2.4 squalene-hopene/tetraprenyl-beta-curcumene cyclase compare
H281DRAFT_01554 +0.8 2.2 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_00487 +0.8 0.9 bacterial peptide chain release factor 2 (bRF-2) compare
H281DRAFT_01766 +0.8 1.3 cytochrome c oxidase subunit 2 compare
H281DRAFT_04880 +0.8 1.1 PRC-barrel domain-containing protein compare
H281DRAFT_02443 +0.8 1.2 alkylhydroperoxidase AhpD family core domain-containing protein compare
H281DRAFT_03036 +0.8 1.9 hypothetical protein compare
H281DRAFT_05753 +0.8 4.6 flagellar biosynthesis protein FlhA compare
H281DRAFT_03609 +0.8 2.3 squalene-associated FAD-dependent desaturase compare
H281DRAFT_03131 +0.8 3.9 proton-dependent oligopeptide transporter, POT family compare
H281DRAFT_05901 +0.8 1.2 Cupin domain-containing protein compare
H281DRAFT_01413 +0.8 1.1 hypothetical protein compare
H281DRAFT_02573 +0.8 2.3 amino acid ABC transporter ATP-binding protein, PAAT family compare
H281DRAFT_03849 +0.8 1.9 protein of unknown function (DUF4863) compare
H281DRAFT_00563 +0.8 2.0 microcin C transport system ATP-binding protein compare
H281DRAFT_04536 +0.8 1.9 protein of unknown function (DUF4126) compare
H281DRAFT_03409 +0.8 1.1 Protein of unknown function (DUF3072) compare
H281DRAFT_05371 +0.8 3.1 OmpA-OmpF porin, OOP family compare
H281DRAFT_01457 +0.8 2.9 hypothetical protein compare
H281DRAFT_02193 +0.8 1.5 hypothetical protein compare
H281DRAFT_06285 +0.8 0.8 3-dehydroquinate dehydratase compare
H281DRAFT_04990 +0.8 1.7 type III secretion translocon protein HrpF compare
H281DRAFT_03305 +0.8 2.7 Acetyltransferases compare
H281DRAFT_01299 +0.8 2.1 methylene-tetrahydromethanopterin dehydrogenase compare
H281DRAFT_05944 +0.8 1.4 DNA-binding transcriptional regulator, FadR family compare
H281DRAFT_00875 +0.8 3.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_05778 +0.8 1.3 flagellar motor switch protein FliN/FliY compare
H281DRAFT_03443 +0.8 2.6 Undecaprenyl-phosphate glucose phosphotransferase compare
H281DRAFT_05005 +0.8 1.3 type III secretion protein HrpB1 compare
H281DRAFT_01377 +0.8 1.1 hypothetical protein compare
H281DRAFT_01178 +0.8 2.2 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_05088 +0.8 2.0 hypothetical protein compare
H281DRAFT_04431 +0.7 3.0 Membrane-bound metallopeptidase compare
H281DRAFT_02354 +0.7 4.5 general secretion pathway protein F compare
H281DRAFT_06405 +0.7 2.8 beta-lactamase class A compare
H281DRAFT_06253 +0.7 3.5 cell division protein ZapD compare
H281DRAFT_02350 +0.7 4.4 general secretion pathway protein I compare
H281DRAFT_01318 +0.7 1.1 hypothetical protein compare
H281DRAFT_02581 +0.7 1.0 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_05079 +0.7 2.1 small conductance mechanosensitive channel compare
H281DRAFT_02931 +0.7 3.4 Uncharacterized conserved protein YodC, DUF2158 family compare
H281DRAFT_04781 +0.7 1.0 putative colanic acid biosynthesis acetyltransferase WcaF compare
H281DRAFT_03450 +0.7 2.7 ABC-2 type transport system permease protein compare
H281DRAFT_05376 +0.7 1.7 hypothetical protein compare
H281DRAFT_03234 +0.7 1.5 chemotaxis protein MotA compare
H281DRAFT_06369 +0.7 2.0 tight adherence protein B compare
H281DRAFT_05406 +0.7 2.2 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_04922 +0.7 1.2 iron complex transport system permease protein compare
H281DRAFT_02813 +0.7 1.1 Uncharacterized protein conserved in bacteria compare
H281DRAFT_03303 +0.7 0.8 NAD+ synthase (glutamine-hydrolysing) compare
H281DRAFT_04850 +0.7 1.8 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase compare
H281DRAFT_05330 +0.7 1.5 urea transporter compare
H281DRAFT_03266 +0.7 1.0 Nicotinamidase-related amidase compare
H281DRAFT_02346 +0.7 1.6 general secretion pathway protein M compare
H281DRAFT_03505 +0.7 2.3 putative phosphonoacetaldehyde dehydrogenase compare
H281DRAFT_02322 +0.7 1.9 hypothetical protein compare
H281DRAFT_03312 +0.7 3.0 PAS domain S-box-containing protein compare
H281DRAFT_06511 +0.7 0.8 reactive intermediate/imine deaminase compare
H281DRAFT_01381 +0.7 1.9 Cellulose synthase subunit D compare
H281DRAFT_01007 +0.7 1.5 hypothetical protein compare
H281DRAFT_04176 +0.7 2.0 Uncharacterized conserved protein, DUF427 family compare
H281DRAFT_02054 +0.7 4.5 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 compare
H281DRAFT_06002 +0.7 1.7 NADPH:quinone reductase compare
H281DRAFT_06165 +0.7 1.3 hypothetical protein compare
H281DRAFT_02998 +0.7 3.9 transcriptional regulator, LuxR family compare
H281DRAFT_03019 +0.7 3.8 hypothetical protein compare
H281DRAFT_03047 +0.7 0.8 protein of unknown function (DUF4148) compare
H281DRAFT_04544 +0.7 1.1 diacylglycerol kinase (ATP) compare
H281DRAFT_05122 +0.7 1.9 host factor-I protein compare
H281DRAFT_04250 +0.7 2.6 DNA-binding protein Fis compare
H281DRAFT_03990 +0.7 1.2 addiction module antidote protein, HigA family compare
H281DRAFT_00728 +0.7 1.8 Predicted N-acyltransferase, GNAT family compare
H281DRAFT_05090 +0.7 1.8 EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) compare
H281DRAFT_01403 +0.7 1.7 hypothetical protein compare
H281DRAFT_04218 +0.7 0.9 hypothetical protein compare
H281DRAFT_01519 +0.7 1.4 fructuronate reductase compare
H281DRAFT_05903 +0.6 1.0 osmotically inducible protein OsmC compare
H281DRAFT_02864 +0.6 1.4 precorrin-8X methylmutase compare
H281DRAFT_01489 +0.6 2.7 hypothetical protein compare
H281DRAFT_02807 +0.6 2.7 Signal transduction histidine kinase compare
H281DRAFT_03396 +0.6 1.0 AraC-type DNA-binding protein compare
H281DRAFT_01297 +0.6 1.3 pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) compare
H281DRAFT_05041 +0.6 1.1 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_06177 +0.6 3.7 hypothetical protein compare
H281DRAFT_05545 +0.6 1.0 NitT/TauT family transport system ATP-binding protein compare
H281DRAFT_01102 +0.6 1.8 hypothetical protein compare
H281DRAFT_01183 +0.6 0.7 Sugar lactone lactonase YvrE compare
H281DRAFT_03573 +0.6 2.5 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_03232 +0.6 2.2 carbohydrate ABC transporter membrane protein 2, CUT1 family compare
H281DRAFT_03428 +0.6 1.1 cytochrome bo3 quinol oxidase subunit 3 (EC 1.10.3.-) compare
H281DRAFT_01293 +0.6 1.6 hypothetical protein compare
H281DRAFT_02170 +0.6 1.3 Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family compare
H281DRAFT_05179 +0.6 2.1 manganese transport protein compare
H281DRAFT_04387 +0.6 2.5 protein SCO1/2 compare
H281DRAFT_02503 +0.6 1.6 Peroxiredoxin compare
H281DRAFT_01483 +0.6 1.1 hypothetical protein compare
H281DRAFT_06287 +0.6 3.6 hypothetical protein compare
H281DRAFT_03619 +0.6 2.0 dihydroflavonol-4-reductase compare
H281DRAFT_05225 +0.6 1.7 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_03155 +0.6 1.4 Protein of unknown function (DUF3311) compare
H281DRAFT_03069 +0.6 0.8 Uncharacterized conserved protein compare
H281DRAFT_00379 +0.6 0.7 dihydroorotate oxidase B, catalytic subunit /dihydrouracil dehydrogenase (NAD+) /dihydropyrimidine dehydrogenase (NADP+) compare
H281DRAFT_05544 +0.6 1.4 NitT/TauT family transport system permease protein compare
H281DRAFT_04939 +0.6 1.6 transcriptional regulator, TetR family compare
H281DRAFT_02584 +0.6 1.1 hypothetical protein compare
H281DRAFT_01885 +0.6 1.3 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_05619 +0.6 3.0 putative transposase compare
H281DRAFT_02624 +0.6 1.9 4-carboxymuconolactone decarboxylase compare
H281DRAFT_00426 +0.6 2.8 monosaccharide ABC transporter ATP-binding protein, CUT2 family compare
H281DRAFT_06577 +0.6 2.9 hypothetical protein compare
H281DRAFT_04947 +0.6 1.2 putative spermidine/putrescine transport system substrate-binding protein compare
H281DRAFT_04100 +0.6 1.3 Protein of unknown function (DUF2917) compare
H281DRAFT_05537 +0.6 0.7 transcriptional regulator, IclR family compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source 2'-Deoxyinosine in Paraburkholderia bryophila 376MFSha3.1

For carbon source 2'-Deoxyinosine across organisms