Experiment set4IT072 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Sodium acetate 34 mM

200 most important genes:

  gene name fitness t score description  
AO353_22685 -3.8 -2.6 peroxidase compare
AO353_12115 -3.5 -2.4 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_00430 -2.9 -4.2 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_03795 -2.7 -4.1 fumarate hydratase compare
AO353_18540 -2.5 -3.2 pseudouridine synthase compare
AO353_13100 -2.5 -2.6 GTPase RsgA compare
AO353_04825 -2.4 -6.9 hypothetical protein compare
AO353_04830 -2.4 -5.7 required for acetate efflux, together with NodT, MFP and FUSC proteins (AO353_04840, AO353_04825, and AO353_04835) (from data) compare
AO353_15250 -2.3 -3.7 cytochrome B compare
AO353_00825 -2.3 -3.7 porin compare
AO353_03585 -2.3 -3.6 ATP-dependent DNA helicase RuvA compare
AO353_04835 -2.3 -11.2 fusaric acid resistance protein compare
AO353_14940 -2.3 -4.2 malate:quinone oxidoreductase compare
AO353_04840 -2.2 -9.8 RND transporter compare
AO353_08110 -2.2 -5.5 glutathione synthetase compare
AO353_13925 -2.1 -2.8 XRE family transcriptional regulator compare
AO353_02250 -2.1 -2.8 chorismate synthase compare
AO353_09250 -2.1 -3.1 exodeoxyribonuclease III compare
AO353_14740 -2.1 -4.0 GTP-binding protein compare
AO353_27695 -2.0 -7.8 isocitrate dehydrogenase compare
AO353_05240 -2.0 -3.8 rod shape-determining protein MreD compare
AO353_11730 -2.0 -9.3 glutamate--cysteine ligase compare
AO353_08165 -1.9 -3.3 pyrroline-5-carboxylate reductase compare
AO353_21625 -1.9 -2.9 Fe/S biogenesis protein NfuA compare
AO353_11750 -1.9 -2.7 ATPase compare
AO353_06045 -1.8 -7.0 exodeoxyribonuclease V subunit beta compare
AO353_04520 -1.8 -5.5 elongation factor 4 compare
AO353_17640 -1.8 -2.7 serine peptidase compare
AO353_10445 -1.7 -2.2 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_08115 -1.7 -6.1 energy transducer TonB compare
AO353_03580 -1.7 -3.5 ATP-dependent DNA helicase RuvB compare
AO353_07075 -1.7 -5.1 elongation factor Tu compare
AO353_04175 -1.6 -4.6 glycerol uptake facilitator GlpF compare
AO353_06040 -1.6 -3.7 exodeoxyribonuclease V subunit alpha compare
AO353_03590 -1.6 -3.8 crossover junction endodeoxyribonuclease RuvC compare
AO353_10320 -1.6 -2.4 hypothetical protein compare
AO353_20185 -1.6 -5.4 DNA-binding protein compare
AO353_11770 -1.6 -2.1 molecular chaperone Hsp33 compare
AO353_03710 -1.6 -2.2 formyltetrahydrofolate deformylase compare
AO353_26045 -1.6 -2.6 hypothetical protein compare
AO353_06495 -1.5 -5.0 gamma-glutamyl phosphate reductase compare
AO353_09000 -1.5 -4.7 argininosuccinate lyase compare
AO353_24745 -1.5 -2.2 hypothetical protein compare
AO353_07645 -1.5 -1.8 sarcosine oxidase subunit gamma compare
AO353_14420 -1.4 -3.6 molecular chaperone DnaK compare
AO353_06850 -1.4 -4.1 MFS transporter compare
AO353_15900 -1.4 -2.3 GTP-binding protein compare
AO353_12500 -1.4 -2.0 shikimate kinase compare
AO353_04565 -1.4 -4.9 nucleoid-associated protein compare
AO353_16940 -1.3 -4.8 deoxycytidine triphosphate deaminase compare
AO353_00650 -1.3 -2.3 cytochrome biogenesis protein compare
AO353_07155 -1.3 -5.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_14150 -1.3 -1.5 peptidylprolyl isomerase compare
AO353_02235 -1.3 -4.7 acireductone dioxygenase compare
AO353_10670 -1.3 -5.8 shikimate dehydrogenase compare
AO353_05690 -1.3 -3.2 SsrA-binding protein compare
AO353_18560 -1.3 -2.3 class I peptide chain release factor compare
AO353_23165 -1.3 -2.8 cupin compare
AO353_12105 -1.3 -5.5 peptidase S41 compare
AO353_21655 -1.2 -2.8 cobalamin biosynthesis protein CobW compare
AO353_06745 -1.2 -2.2 zinc-binding protein compare
AO353_28425 -1.2 -3.0 TetR family transcriptional regulator compare
AO353_15460 -1.2 -5.5 cytochrome o ubiquinol oxidase subunit III compare
AO353_03250 -1.2 -2.1 gluconokinase compare
AO353_20170 -1.2 -4.2 trigger factor compare
AO353_03615 -1.2 -2.5 cold-shock protein compare
AO353_15905 -1.2 -4.9 outer membrane protein assembly factor BamB compare
AO353_02100 -1.2 -2.3 phosphoglycolate phosphatase compare
AO353_06050 -1.2 -5.1 exodeoxyribonuclease V subunit gamma compare
AO353_17035 -1.2 -4.6 hypothetical protein compare
AO353_27720 -1.2 -3.8 cupin compare
AO353_02220 -1.2 -1.8 hypothetical protein compare
AO353_27380 -1.2 -1.1 pyocin R2, holin compare
AO353_09275 -1.1 -3.2 DNA-directed RNA polymerase subunit omega compare
AO353_18780 -1.1 -4.8 cobyrinic acid a,c-diamide synthase compare
AO353_11185 -1.1 -8.0 channel protein TolC compare
AO353_09240 -1.1 -2.5 acetylglutamate kinase compare
AO353_11940 -1.1 -2.6 hypothetical protein compare
AO353_18425 -1.1 -3.5 hypothetical protein compare
AO353_09315 -1.1 -6.3 LysR family transcriptional regulator compare
AO353_11180 -1.1 -9.5 large adhesive protein compare
AO353_02005 -1.1 -1.3 hypothetical protein compare
AO353_05625 -1.1 -1.1 transcription elongation factor GreA compare
AO353_03515 -1.1 -1.6 cold-shock protein compare
AO353_11190 -1.1 -7.4 ABC transporter compare
AO353_13225 -1.0 -2.6 50S ribosomal protein L9 compare
AO353_01975 -1.0 -5.0 glycosyl transferase compare
AO353_08470 -1.0 -3.1 RNA pyrophosphohydrolase compare
AO353_24130 -1.0 -2.2 hypothetical protein compare
AO353_07355 -1.0 -4.2 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_16195 -1.0 -1.0 DNA mismatch repair protein MutT compare
AO353_26390 -1.0 -1.7 glyoxalase compare
AO353_02000 -1.0 -2.3 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_01970 -1.0 -6.2 hypothetical protein compare
AO353_01985 -1.0 -5.8 hypothetical protein compare
AO353_06415 -1.0 -3.0 hypothetical protein compare
AO353_05125 -1.0 -3.6 BolA family transcriptional regulator compare
AO353_05550 -1.0 -4.4 pseudouridine synthase compare
AO353_27650 -1.0 -3.1 cell division protein FtsK compare
AO353_09015 -1.0 -2.7 DNA-binding protein compare
AO353_02020 -1.0 -3.1 hypothetical protein compare
AO353_05415 -1.0 -2.0 hypothetical protein compare
AO353_12130 -1.0 -3.3 preprotein translocase subunit SecB compare
AO353_25490 -1.0 -2.5 transcriptional regulator compare
AO353_11050 -1.0 -3.3 hypothetical protein compare
AO353_11170 -1.0 -6.2 hypothetical protein compare
AO353_20175 -1.0 -2.2 ATP-dependent Clp protease proteolytic subunit compare
AO353_01995 -1.0 -6.7 hypothetical protein compare
AO353_00660 -0.9 -1.9 transcriptional regulator compare
AO353_09060 -0.9 -1.7 hypothetical protein compare
AO353_23945 -0.9 -1.8 hypothetical protein compare
AO353_12420 -0.9 -2.5 predicted FeS cluster maintenance protein (from data) compare
AO353_05150 -0.9 -3.3 ABC transporter ATP-binding protein compare
AO353_12345 -0.9 -1.5 twin-arginine protein translocation system subunit TatC compare
AO353_21895 -0.9 -2.3 molybdenum cofactor biosynthesis protein MoaD compare
AO353_21520 -0.9 -2.9 hypothetical protein compare
AO353_11195 -0.9 -7.2 hemolysin secretion protein D compare
AO353_14485 -0.9 -0.9 pseudouridine synthase compare
AO353_08645 -0.9 -2.4 transporter compare
AO353_02070 -0.9 -3.1 prephenate dehydratase compare
AO353_13200 -0.9 -5.9 exoribonuclease R compare
AO353_26280 -0.9 -2.0 peptidase M48, Ste24p compare
AO353_14220 -0.9 -1.1 ribosomal large subunit pseudouridine synthase D compare
AO353_27185 -0.9 -2.8 hypothetical protein compare
AO353_17165 -0.9 -2.1 ATP-dependent helicase compare
AO353_05520 -0.9 -3.7 nicotinate-nucleotide pyrophosphorylase compare
AO353_21635 -0.9 -3.1 cobalamin biosynthesis protein CobE compare
AO353_11485 -0.9 -3.1 hypothetical protein compare
AO353_04500 -0.9 -1.8 DNA repair protein RecO compare
AO353_22395 -0.9 -2.8 pyrroloquinoline quinone biosynthesis protein PqqB compare
AO353_14775 -0.9 -3.7 hypothetical protein compare
AO353_17160 -0.9 -1.6 aspartate-semialdehyde dehydrogenase compare
AO353_15885 -0.8 -3.0 Cro/Cl family transcriptional regulator compare
AO353_09915 -0.8 -4.8 long-chain acyl-CoA thioester hydrolase compare
AO353_07315 -0.8 -2.0 rRNA methyltransferase compare
AO353_23790 -0.8 -1.7 metal-binding protein compare
AO353_14030 -0.8 -5.8 ABC transporter ATP-binding protein compare
AO353_22370 -0.8 -2.5 branched-chain amino acid ABC transporter substrate-binding protein compare
AO353_13220 -0.8 -3.5 hypothetical protein compare
AO353_14370 -0.8 -3.8 glucose-6-phosphate isomerase compare
AO353_28555 -0.8 -1.4 LysR family transcriptional regulator compare
AO353_21645 -0.8 -1.6 cobalt transporter compare
AO353_00330 -0.8 -4.4 hypothetical protein compare
AO353_13165 -0.8 -3.3 ATP phosphoribosyltransferase regulatory subunit compare
AO353_09235 -0.8 -4.2 phosphoglucomutase compare
AO353_18120 -0.8 -1.5 hypothetical protein compare
AO353_02515 -0.8 -3.8 recombination-associated protein RdgC compare
AO353_19625 -0.8 -2.3 isopentenyl-diphosphate delta-isomerase compare
AO353_16805 -0.8 -3.3 recombinase RecA compare
AO353_13085 -0.8 -2.2 histidine kinase compare
AO353_09560 -0.8 -1.1 type VI secretion protein compare
AO353_26080 -0.8 -2.2 hypothetical protein compare
AO353_04105 -0.8 -4.2 argininosuccinate synthase compare
AO353_02885 -0.8 -2.0 flagellar biosynthesis protein FlgN compare
AO353_13715 -0.8 -2.6 translation initiation factor Sui1 compare
AO353_02010 -0.8 -3.5 glycosyl transferase family 1 compare
AO353_19720 -0.8 -2.7 hemolysin D compare
AO353_15480 -0.8 -1.5 hypothetical protein compare
AO353_03825 -0.8 -2.4 hypothetical protein compare
AO353_06585 -0.8 -3.8 hypothetical protein compare
AO353_05130 -0.8 -1.0 anti-anti-sigma factor compare
AO353_18505 -0.8 -1.0 translation initiation factor 2 compare
AO353_05145 -0.8 -3.2 ABC transporter permease compare
AO353_04355 -0.8 -1.4 homoserine dehydrogenase compare
AO353_10930 -0.8 -4.3 DNA polymerase I compare
AO353_15555 -0.8 -2.5 fumarylacetoacetase compare
AO353_17525 -0.8 -2.6 tRNA-Gly compare
AO353_09835 -0.8 -2.2 rubredoxin compare
AO353_26945 -0.7 -1.0 transcriptional regulator compare
AO353_17290 -0.7 -3.2 multidrug transporter compare
AO353_09045 -0.7 -1.0 hypothetical protein compare
AO353_04035 -0.7 -2.1 exclusion suppressor FxsA compare
AO353_21560 -0.7 -2.8 type VI secretion protein compare
AO353_22415 -0.7 -1.8 alcohol dehydrogenase compare
AO353_13245 -0.7 -4.4 hypothetical protein compare
AO353_23265 -0.7 -2.8 chromate resistance protein compare
AO353_00235 -0.7 -1.8 transcriptional regulator compare
AO353_08090 -0.7 -3.5 chemotaxis protein compare
AO353_02975 -0.7 -2.1 aspartate kinase compare
AO353_04845 -0.7 -4.9 LysR family transcriptional regulator compare
AO353_02710 -0.7 -4.8 (p)ppGpp synthetase compare
AO353_13950 -0.7 -3.0 50S rRNA methyltransferase compare
AO353_00695 -0.7 -4.3 diguanylate cyclase compare
AO353_27905 -0.7 -2.9 N-formylglutamate amidohydrolase compare
AO353_09905 -0.7 -4.2 phosphate-binding protein compare
AO353_04365 -0.7 -2.4 recombinase XerD compare
AO353_02015 -0.7 -3.4 acetyltransferase compare
AO353_24885 -0.7 -2.2 Crp/Fnr family transcriptional regulator compare
AO353_03840 -0.7 -1.4 ABC transporter ATP-binding protein compare
AO353_05140 -0.7 -3.6 outer membrane lipid asymmetry maintenance protein MlaD compare
AO353_15455 -0.7 -5.4 cytochrome o ubiquinol oxidase subunit I compare
AO353_00105 -0.7 -1.2 hypothetical protein compare
AO353_12935 -0.7 -2.0 glycosyltransferase compare
AO353_26055 -0.7 -1.2 hypothetical protein compare
AO353_27950 -0.7 -1.1 hypothetical protein compare
AO353_22200 -0.7 -2.1 metal-binding protein compare
AO353_08080 -0.7 -3.0 chemotaxis protein compare
AO353_10705 -0.7 -2.2 tryptophan synthase subunit alpha compare
AO353_12245 -0.7 -2.3 hypothetical protein compare
AO353_22135 -0.7 -1.8 anaerobic ribonucleoside-triphosphate reductase activating protein compare


Specific Phenotypes

For 8 genes in this experiment

For stress Sodium acetate in Pseudomonas fluorescens FW300-N2E3

For stress Sodium acetate across organisms