Experiment set4IT072 for Pseudomonas fluorescens FW300-N1B4

Compare to:

L-Alanine carbon source

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_2880 -3.7 -8.8 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_15 -3.7 -2.5 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_6 -3.6 -4.9 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_5666 -3.3 -3.8 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_2143 -3.3 -10.3 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system conserved
Pf1N1B4_2303 -3.3 -11.2 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_5926 -3.2 -12.5 hypothetical protein compare
Pf1N1B4_1624 -3.1 -5.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_1534 -3.0 -16.0 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_1307 -3.0 -2.8 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_3917 -2.9 -4.7 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf1N1B4_2545 -2.9 -10.5 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_1565 -2.9 -2.8 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_2384 -2.9 -9.5 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_1830 -2.8 -8.3 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_5665 -2.8 -4.8 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_1831 -2.8 -9.0 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_1067 -2.8 -6.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_2112 -2.8 -12.2 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_742 -2.8 -4.9 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_5925 -2.7 -11.4 hypothetical protein compare
Pf1N1B4_2548 -2.7 -6.2 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_2144 -2.7 -6.5 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf1N1B4_3506 -2.7 -6.1 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_2547 -2.7 -3.1 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_350 -2.7 -6.9 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_2282 -2.7 -7.2 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2549 -2.7 -7.9 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_12 -2.7 -5.4 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_2380 -2.7 -13.1 Cytochrome B561 compare
Pf1N1B4_2858 -2.6 -8.4 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_1533 -2.6 -6.7 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_1627 -2.6 -3.5 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_5224 -2.6 -3.7 tRNA-Arg-CCT compare
Pf1N1B4_1625 -2.6 -5.1 FIG00956267: hypothetical protein compare
Pf1N1B4_2009 -2.6 -3.9 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_2491 -2.6 -3.4 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf1N1B4_2488 -2.6 -6.5 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf1N1B4_1315 -2.5 -7.1 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_801 -2.5 -6.3 D-serine/D-alanine/glycine transporter conserved
Pf1N1B4_1626 -2.5 -6.1 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_1408 -2.5 -4.0 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_2010 -2.5 -5.8 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_2879 -2.5 -4.7 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_5924 -2.5 -10.0 hypothetical protein compare
Pf1N1B4_2338 -2.5 -6.1 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_1317 -2.5 -2.8 Sensor histidine kinase/response regulator compare
Pf1N1B4_762 -2.4 -5.0 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_1057 -2.4 -2.7 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_2878 -2.4 -7.6 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_1617 -2.3 -6.9 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_3812 -2.3 -8.3 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_1328 -2.3 -3.5 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf1N1B4_2381 -2.2 -9.9 Protein yceI precursor compare
Pf1N1B4_2874 -2.2 -3.1 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_847 -2.2 -7.4 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_2284 -2.2 -3.8 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf1N1B4_4516 -2.2 -3.5 Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism compare
Pf1N1B4_5927 -2.2 -15.9 Capsular polysaccharide biosynthesis protein compare
Pf1N1B4_578 -2.2 -4.0 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_1611 -2.2 -5.1 Nitrogen regulation protein NR(I) compare
Pf1N1B4_4065 -2.2 -7.1 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_2377 -2.1 -5.3 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_1434 -2.0 -5.6 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2487 -2.0 -6.6 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_2337 -2.0 -4.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_2208 -2.0 -6.3 Polyphosphate kinase (EC 2.7.4.1) compare
Pf1N1B4_2011 -2.0 -6.0 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_3907 -1.9 -3.0 FIG00953287: hypothetical protein compare
Pf1N1B4_3906 -1.9 -4.7 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_1610 -1.9 -3.4 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf1N1B4_2489 -1.9 -4.8 Biotin synthesis protein BioH compare
Pf1N1B4_2490 -1.9 -5.0 Biotin synthesis protein BioC compare
Pf1N1B4_883 -1.9 -2.3 Hypothetical nudix hydrolase YeaB compare
Pf1N1B4_2859 -1.8 -11.2 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_3697 -1.8 -7.6 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_3350 -1.8 -2.9 FIG00954807: hypothetical protein compare
Pf1N1B4_1475 -1.8 -6.5 FIG00962376: hypothetical protein compare
Pf1N1B4_2272 -1.8 -3.2 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_2105 -1.8 -2.3 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_3152 -1.8 -5.3 LysR family transcriptional regulator PA3398 compare
Pf1N1B4_2486 -1.8 -1.6 hypothetical protein compare
Pf1N1B4_4477 -1.7 -2.9 Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase (EC 1.8.1.4) compare
Pf1N1B4_799 -1.7 -2.3 hypothetical protein compare
Pf1N1B4_3518 -1.6 -2.2 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_3692 -1.6 -2.9 Chaperone protein HtpG compare
Pf1N1B4_27 -1.6 -3.8 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf1N1B4_5219 -1.5 -2.6 tRNA-Gly-CCC compare
Pf1N1B4_1153 -1.5 -2.8 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf1N1B4_3443 -1.5 -3.0 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf1N1B4_4102 -1.5 -3.0 Mannose-6-phosphate isomerase (EC 5.3.1.8) compare
Pf1N1B4_2400 -1.5 -2.6 FIG00955006: hypothetical protein compare
Pf1N1B4_5649 -1.5 -2.6 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) compare
Pf1N1B4_1906 -1.4 -3.0 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_5860 -1.4 -2.3 Two-component response regulator compare
Pf1N1B4_5619 -1.4 -3.3 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf1N1B4_3081 -1.4 -11.9 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_3833 -1.4 -5.9 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_1566 -1.4 -5.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_5370 -1.4 -1.4 hypothetical protein compare
Pf1N1B4_2850 -1.4 -5.3 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_5652 -1.3 -2.7 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf1N1B4_4473 -1.3 -2.2 Homoserine/homoserine lactone efflux protein compare
Pf1N1B4_2176 -1.3 -2.5 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly compare
Pf1N1B4_1 -1.3 -2.0 Colicin V production protein compare
Pf1N1B4_3153 -1.3 -1.7 hypothetical protein compare
Pf1N1B4_2005 -1.3 -1.7 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_49 -1.3 -2.8 hypothetical protein compare
Pf1N1B4_2280 -1.3 -5.6 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_1691 -1.2 -1.5 hypothetical protein compare
Pf1N1B4_3503 -1.2 -3.7 Two-component response regulator PfeR, enterobactin compare
Pf1N1B4_5507 -1.2 -2.2 hypothetical protein compare
Pf1N1B4_3809 -1.2 -3.0 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf1N1B4_2283 -1.2 -1.7 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_3985 -1.2 -2.0 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Pf1N1B4_2228 -1.2 -2.6 FIG001590: Putative conserved exported protein precursor compare
Pf1N1B4_722 -1.2 -1.8 SAM-dependent methyltransferases compare
Pf1N1B4_1234 -1.1 -3.1 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_3656 -1.1 -1.5 Eukaryotic-type low-affinity urea transporter compare
Pf1N1B4_1159 -1.1 -2.0 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf1N1B4_846 -1.1 -1.3 hypothetical protein compare
Pf1N1B4_5255 -1.1 -2.2 hypothetical protein compare
Pf1N1B4_5147 -1.1 -1.7 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase compare
Pf1N1B4_3290 -1.1 -2.4 Alternative cytochrome c oxidase polypeptide CoxP (EC 1.9.3.1) compare
Pf1N1B4_4833 -1.1 -2.6 DNA-binding response regulator, LuxR family compare
Pf1N1B4_1695 -1.1 -1.3 Cystine ABC transporter, ATP-binding protein compare
Pf1N1B4_5659 -1.1 -7.0 NfuA Fe-S protein maturation compare
Pf1N1B4_4729 -1.1 -1.7 Hemolysin-type calcium-binding region compare
Pf1N1B4_4494 -1.1 -2.6 hypothetical protein compare
Pf1N1B4_5383 -1.1 -6.2 hypothetical protein compare
Pf1N1B4_4506 -1.1 -2.5 Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) compare
Pf1N1B4_3936 -1.1 -2.2 Transcriptional regulator, LysR family compare
Pf1N1B4_3729 -1.1 -1.7 Quaternary ammonium compound-resistance protein SugE compare
Pf1N1B4_2352 -1.0 -3.5 Glutathione synthetase (EC 6.3.2.3) compare
Pf1N1B4_1065 -1.0 -4.2 Histidinol-phosphate aminotransferase (EC 2.6.1.9) compare
Pf1N1B4_175 -1.0 -2.0 sigma-54 dependent transcriptional regulator compare
Pf1N1B4_1535 -1.0 -1.6 hypothetical protein compare
Pf1N1B4_3670 -1.0 -2.9 probable glucosyl transferase compare
Pf1N1B4_1116 -1.0 -6.7 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf1N1B4_1333 -1.0 -3.1 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf1N1B4_2401 -1.0 -2.0 Lipoprotein, putative compare
Pf1N1B4_5386 -1.0 -1.8 hypothetical protein compare
Pf1N1B4_2706 -1.0 -1.9 FIG00954871: hypothetical protein compare
Pf1N1B4_1590 -1.0 -3.3 Histidine utilization repressor compare
Pf1N1B4_910 -1.0 -2.5 Cyanate transport protein CynX compare
Pf1N1B4_1294 -1.0 -1.6 VgrG protein compare
Pf1N1B4_327 -1.0 -1.2 hypothetical protein compare
Pf1N1B4_365 -1.0 -3.6 Cell division protein BolA compare
Pf1N1B4_5311 -1.0 -1.8 hypothetical protein compare
Pf1N1B4_3038 -1.0 -3.1 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf1N1B4_3709 -1.0 -2.4 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf1N1B4_2943 -0.9 -2.0 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_4931 -0.9 -1.7 Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.79) compare
Pf1N1B4_2209 -0.9 -5.1 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_3685 -0.9 -2.7 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) compare
Pf1N1B4_5762 -0.9 -1.7 Nitric oxide reductase activation protein NorE compare
Pf1N1B4_4368 -0.9 -2.1 Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_731 -0.9 -1.7 Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like compare
Pf1N1B4_475 -0.9 -3.4 ABC-type multidrug transport system, permease component compare
Pf1N1B4_1427 -0.9 -3.0 hypothetical protein compare
Pf1N1B4_4040 -0.9 -1.7 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_3445 -0.9 -2.1 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf1N1B4_4585 -0.9 -2.0 Putative Isoquinoline 1-oxidoreductase subunit, Mll3835 protein compare
Pf1N1B4_257 -0.9 -3.4 sensor histidine kinase/response regulator compare
Pf1N1B4_5996 -0.9 -3.0 Transposase compare
Pf1N1B4_1391 -0.9 -3.0 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf1N1B4_2273 -0.9 -3.1 hypothetical protein compare
Pf1N1B4_5239 -0.9 -2.0 hypothetical protein compare
Pf1N1B4_4253 -0.9 -1.5 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_3927 -0.9 -1.3 hypothetical protein compare
Pf1N1B4_2435 -0.9 -2.3 hypothetical protein compare
Pf1N1B4_3751 -0.9 -1.4 FIG00953060: hypothetical protein compare
Pf1N1B4_4320 -0.8 -2.1 Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1) compare
Pf1N1B4_1568 -0.8 -2.4 Twin-arginine translocation protein TatB compare
Pf1N1B4_5737 -0.8 -1.8 Nitrate/nitrite transporter compare
Pf1N1B4_232 -0.8 -1.6 DNA-binding response regulator, LuxR family compare
Pf1N1B4_1530 -0.8 -2.4 LysR family transcriptional regulator YnfL compare
Pf1N1B4_3356 -0.8 -1.4 Cyclic nucleotide-binding protein compare
Pf1N1B4_3339 -0.8 -3.1 Transcriptional regulator, LysR family compare
Pf1N1B4_4195 -0.8 -2.4 Transcriptional regulator, TetR family compare
Pf1N1B4_255 -0.8 -2.7 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf1N1B4_2493 -0.8 -1.7 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare
Pf1N1B4_4734 -0.8 -1.9 Fap protein with C39 domain compare
Pf1N1B4_5834 -0.8 -1.5 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Pf1N1B4_4999 -0.8 -2.1 Sugar diacid utilization regulator SdaR compare
Pf1N1B4_2329 -0.8 -2.4 COG2363 compare
Pf1N1B4_5577 -0.8 -2.2 twitching motility protein PilG compare
Pf1N1B4_1191 -0.8 -1.2 hypothetical protein compare
Pf1N1B4_5023 -0.8 -1.9 Alkylated DNA repair protein AlkB compare
Pf1N1B4_1581 -0.8 -2.0 Histidine ammonia-lyase (EC 4.3.1.3) compare
Pf1N1B4_626 -0.8 -3.7 Quinolinate synthetase (EC 2.5.1.72) compare
Pf1N1B4_1683 -0.8 -1.5 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf1N1B4_1329 -0.8 -3.2 Cobalamin biosynthesis protein CobG compare
Pf1N1B4_401 -0.8 -2.3 GCN5-related N-acetyltransferase (EC 2.3.1.57) compare
Pf1N1B4_5591 -0.8 -1.4 Vanillin dehydrogenase (Hydroxybenzaldehyde dehydrogenase) (EC 1.2.1.28) compare
Pf1N1B4_5249 -0.8 -1.9 Outer membrane protein A precursor compare
Pf1N1B4_2421 -0.8 -1.8 L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) compare
Pf1N1B4_4107 -0.8 -1.6 Probable glutathione S-transferase (EC 2.5.1.18), YfcF homolog compare
Pf1N1B4_3768 -0.8 -1.6 Homoserine/homoserine lactone efflux protein compare
Pf1N1B4_345 -0.8 -1.3 Integration host factor beta subunit compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source L-Alanine in Pseudomonas fluorescens FW300-N1B4

For carbon source L-Alanine across organisms