Experiment set4IT072 for Vibrio cholerae E7946 ATCC 55056

Compare to:

ICP1_phage_235.3_MOI_rep1

200 most important genes:

  gene name fitness t score description  
CSW01_02755 -4.9 -2.4 glutamyl-tRNA amidotransferase compare
CSW01_10255 -4.2 -2.2 cytochrome c-type biogenesis protein CcmH compare
CSW01_16130 -4.1 -1.1 acetyltransferase compare
CSW01_03880 -4.1 -1.5 HTH-type transcriptional regulator IscR compare
CSW01_07750 -4.0 -1.0 hypothetical protein compare
CSW01_13670 -4.0 -2.6 DNA-directed RNA polymerase subunit omega compare
CSW01_18350 -3.8 -1.9 cell division protein DedD compare
CSW01_12365 -3.7 -2.5 inorganic phosphate transporter compare
CSW01_13285 -3.6 -3.5 ribulose-phosphate 3-epimerase compare
CSW01_11555 -3.5 -4.1 riboflavin synthase compare
CSW01_03205 -3.4 -8.6 iron ABC transporter substrate-binding protein compare
CSW01_13805 -3.2 -5.8 Hsp33 family molecular chaperone HslO compare
CSW01_12255 -3.2 -4.1 flavodoxin FldB compare
CSW01_11560 -3.2 -5.3 riboflavin biosynthesis protein RibD compare
CSW01_03210 -3.2 -14.0 iron ABC transporter permease compare
CSW01_06810 -3.1 -1.1 hypothetical protein compare
CSW01_01485 -3.1 -6.2 transcriptional regulator compare
CSW01_06380 -3.0 -2.1 GTP cyclohydrolase II compare
CSW01_00560 -3.0 -8.1 DNA polymerase I compare
CSW01_12005 -3.0 -4.5 aerobic respiration two-component sensor histidine kinase ArcB compare
CSW01_03215 -3.0 -12.3 ABC transporter ATP-binding protein compare
CSW01_00015 -2.9 -3.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
CSW01_10260 -2.9 -3.4 thiol:disulfide interchange protein DsbE compare
CSW01_12885 -2.9 -8.5 fructose 1,6-bisphosphatase compare
CSW01_03410 -2.8 -2.7 polyribonucleotide nucleotidyltransferase compare
CSW01_10340 -2.8 -4.1 MinD/ParA family protein compare
CSW01_03325 -2.7 -4.1 porin compare
CSW01_17275 -2.7 -1.0 large conductance mechanosensitive channel protein MscL compare
CSW01_03980 -2.6 -8.4 IMP dehydrogenase compare
CSW01_05265 -2.6 -1.5 methionine--tRNA ligase compare
CSW01_16590 -2.5 -1.1 N-acetyltransferase compare
CSW01_18635 -2.5 -5.3 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) compare
CSW01_11785 -2.5 -1.7 exonuclease V subunit gamma compare
CSW01_18725 -2.5 -2.2 TetR/AcrR family transcriptional regulator compare
CSW01_18310 -2.5 -1.5 hypothetical protein compare
CSW01_02490 -2.4 -8.3 glutathione synthetase compare
CSW01_18525 -2.4 -1.7 integrase compare
CSW01_09250 -2.3 -2.4 crossover junction endodeoxyribonuclease RuvC compare
CSW01_16690 -2.2 -1.6 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_02970 -2.2 -8.0 glutamate--cysteine ligase compare
CSW01_05370 -2.2 -2.0 YbaB/EbfC family nucleoid-associated protein compare
CSW01_01490 -2.2 -2.5 Fis family transcriptional regulator compare
CSW01_05575 -2.2 -3.6 phosphate acetyltransferase compare
CSW01_11780 -2.1 -3.5 exodeoxyribonuclease V subunit beta compare
CSW01_02875 -2.1 -5.8 DNA recombination/repair protein RecA compare
CSW01_10285 -2.1 -3.4 heme exporter protein CcmB compare
CSW01_08730 -2.1 -2.0 phage-shock protein compare
CSW01_04820 -2.1 -9.0 serine hydroxymethyltransferase compare
CSW01_01125 -2.1 -7.8 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
CSW01_12320 -2.0 -4.0 3',5'-cyclic-AMP phosphodiesterase compare
CSW01_17325 -2.0 -6.7 transaldolase compare
CSW01_05165 -2.0 -1.4 electron transport complex subunit RsxC compare
CSW01_10265 -2.0 -5.6 c-type cytochrome biogenesis protein CcmF compare
CSW01_14055 -2.0 -6.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
CSW01_09720 -1.9 -2.0 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
CSW01_07150 -1.9 -2.0 spermidine/putrescine ABC transporter permease PotC compare
CSW01_08675 -1.9 -1.5 DUF2007 domain-containing protein compare
CSW01_13635 -1.9 -8.3 thiol:disulfide interchange protein DsbD compare
CSW01_05065 -1.9 -4.4 N-acetylglucosamine repressor compare
CSW01_00470 -1.9 -3.2 twin-arginine translocase subunit TatC compare
CSW01_00500 -1.8 -11.2 glycerol-3-phosphate 1-O-acyltransferase compare
CSW01_05730 -1.8 -9.8 inosine/guanosine kinase compare
CSW01_09485 -1.8 -2.2 DUF1425 domain-containing protein compare
CSW01_00460 -1.8 -3.4 twin-arginine translocase subunit TatA compare
CSW01_10270 -1.7 -3.6 cytochrome c-type biogenesis protein CcmE compare
CSW01_03795 -1.7 -1.1 phosphate ABC transporter ATP-binding protein compare
CSW01_11670 -1.7 -2.0 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
CSW01_12680 -1.7 -6.2 cytosol aminopeptidase compare
CSW01_11730 -1.7 -2.9 2-dehydropantoate 2-reductase compare
CSW01_08660 -1.7 -5.0 PurR family transcriptional regulator compare
CSW01_17000 -1.7 -1.7 DUF3332 domain-containing protein compare
CSW01_09340 -1.7 -2.0 hypothetical protein compare
CSW01_00195 -1.7 -3.5 hypothetical protein compare
CSW01_16900 -1.6 -1.4 twin-arginine translocase TatA/TatE family subunit compare
CSW01_04910 -1.6 -2.4 PhoH family protein compare
CSW01_10280 -1.6 -4.2 heme exporter protein C compare
CSW01_05580 -1.5 -4.9 acetate kinase compare
CSW01_11410 -1.5 -1.7 nitrogen regulatory protein P-II compare
CSW01_09815 -1.5 -2.3 TetR/AcrR family transcriptional regulator compare
CSW01_12735 -1.5 -3.0 RidA family protein compare
CSW01_10875 -1.5 -4.4 redox-regulated ATPase YchF compare
CSW01_16835 -1.5 -3.1 catabolite repressor/activator compare
CSW01_16990 -1.4 -1.1 hypothetical protein compare
CSW01_13450 -1.4 -3.1 EF-P beta-lysylation protein EpmB compare
CSW01_17835 -1.4 -1.0 hypothetical protein compare
CSW01_00170 -1.4 -3.3 thiol:disulfide interchange protein DsbA compare
CSW01_03045 -1.4 -1.8 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CSW01_03695 -1.4 -3.7 ribosomal large subunit pseudouridine synthase D compare
CSW01_09625 -1.4 -1.9 hypothetical protein compare
CSW01_02450 -1.4 -4.5 pyrroline-5-carboxylate reductase compare
CSW01_03790 -1.4 -2.1 phosphate ABC transporter, permease protein PstA compare
CSW01_07085 -1.4 -4.0 carboxypeptidase M32 compare
CSW01_15680 -1.4 -1.9 DUF3265 domain-containing protein compare
CSW01_17495 -1.4 -4.2 glycerol-3-phosphate dehydrogenase compare
CSW01_02230 -1.4 -2.7 ribonuclease E inhibitor RraB compare
CSW01_16210 -1.4 -1.2 VOC family protein compare
CSW01_11225 -1.4 -5.0 flagellar basal body rod protein FlgB compare
CSW01_10745 -1.3 -1.3 DUF2897 domain-containing protein compare
CSW01_00005 -1.3 -1.8 hypothetical protein compare
CSW01_00025 -1.3 -0.8 membrane protein insertion efficiency factor YidD compare
CSW01_18730 -1.3 -1.3 DUF406 domain-containing protein compare
CSW01_13305 -1.3 -1.2 shikimate kinase compare
CSW01_09035 -1.3 -2.8 IclR family transcriptional regulator compare
CSW01_10195 -1.3 -1.4 hypothetical protein compare
CSW01_15730 -1.3 -0.7 VOC family protein compare
CSW01_15705 -1.3 -1.5 DUF3265 domain-containing protein compare
CSW01_18695 -1.3 -2.3 energy transducer TonB compare
CSW01_01820 -1.3 -4.1 N-acetylmuramoyl-L-alanine amidase compare
CSW01_09010 -1.3 -1.1 hypothetical protein compare
CSW01_03785 -1.3 -2.4 phosphate ABC transporter permease compare
CSW01_08935 -1.3 -1.5 N-acetylmannosamine-6-phosphate 2-epimerase compare
CSW01_15695 -1.3 -1.2 DUF3265 domain-containing protein compare
CSW01_05275 -1.3 -0.9 hypothetical protein compare
CSW01_11215 -1.3 -3.8 flagellar hook assembly protein FlgD compare
CSW01_00650 -1.3 -4.5 tyrosine recombinase XerC compare
CSW01_10740 -1.2 -1.1 peptidase M15 compare
CSW01_11920 -1.2 -4.2 NupC/NupG family nucleoside CNT transporter compare
CSW01_12250 -1.2 -4.5 site-specific tyrosine recombinase XerD compare
CSW01_01580 -1.2 -2.1 ferredoxin compare
CSW01_07915 -1.2 -2.3 glycine--lipid A transferase AlmG compare
CSW01_07195 -1.2 -2.0 cytochrome biogenesis protein compare
CSW01_10590 -1.2 -1.4 flagellar biosynthetic protein FliQ compare
CSW01_10290 -1.2 -2.6 cytochrome c biogenesis ATP-binding export protein CcmA compare
CSW01_18685 -1.2 -0.6 heme utilization cystosolic carrier protein HutX compare
CSW01_17360 -1.2 -2.4 GNAT family acetyltransferase compare
CSW01_09465 -1.1 -3.5 NAD(P)/FAD-dependent oxidoreductase compare
CSW01_13420 -1.1 -1.5 elongation factor P--(R)-beta-lysine ligase compare
CSW01_07535 -1.1 -3.0 paraquat-inducible protein A compare
CSW01_11015 -1.1 -3.2 hypothetical protein compare
CSW01_05015 -1.1 -2.0 selenoprotein W-like protein compare
CSW01_07015 -1.1 -3.7 response regulator compare
CSW01_12200 -1.1 -1.5 ribosomal RNA small subunit methyltransferase H compare
CSW01_17830 -1.1 -1.5 hypothetical protein compare
CSW01_13810 -1.1 -4.0 phosphoenolpyruvate carboxykinase (ATP) compare
CSW01_10145 -1.1 -2.8 ribonuclease E compare
CSW01_12610 -1.1 -1.5 3-isopropylmalate dehydratase small subunit compare
CSW01_08980 -1.1 -2.0 hypothetical protein compare
CSW01_06035 -1.1 -1.1 hypothetical protein compare
CSW01_08535 -1.0 -2.1 TIGR02647 family protein compare
CSW01_00080 -1.0 -1.1 hypothetical protein compare
CSW01_17670 -1.0 -3.7 hypothetical protein compare
CSW01_00065 -1.0 -4.0 DNA replication and repair protein RecF compare
CSW01_09475 -1.0 -3.3 thiamine kinase compare
CSW01_16035 -1.0 -1.7 DUF645 domain-containing protein compare
CSW01_11535 -1.0 -2.8 thiamine-phosphate kinase compare
CSW01_09240 -1.0 -2.7 Holliday junction branch migration DNA helicase RuvB compare
CSW01_15305 -1.0 -2.0 XRE family transcriptional regulator compare
CSW01_17735 -1.0 -2.4 methylglyoxal synthase compare
CSW01_04375 -1.0 -1.9 SsrA-binding protein compare
CSW01_15825 -1.0 -2.3 hypothetical protein compare
CSW01_06920 -1.0 -1.4 DUF2760 domain-containing protein compare
CSW01_15470 -1.0 -1.8 NAD(P)-dependent oxidoreductase compare
CSW01_16585 -1.0 -1.0 acetyltransferase compare
CSW01_06030 -1.0 -1.1 helicase compare
CSW01_03745 -1.0 -1.3 ferredoxin compare
CSW01_12130 -1.0 -1.3 DUF721 domain-containing protein compare
CSW01_08700 -1.0 -2.8 DUF2498 domain-containing protein compare
CSW01_01555 -1.0 -5.1 ATP-dependent RNA helicase RhlB compare
CSW01_11190 -1.0 -3.6 flagellar P-ring protein compare
CSW01_17420 -1.0 -2.4 transcriptional regulator compare
CSW01_03270 -1.0 -1.5 hypothetical protein compare
CSW01_12535 -1.0 -1.9 cell division protein ZapA compare
CSW01_17885 -0.9 -1.4 hypothetical protein compare
CSW01_01875 -0.9 -1.8 hypothetical protein compare
CSW01_01980 -0.9 -3.5 transcriptional regulator Zur compare
CSW01_04150 -0.9 -3.9 RNA methyltransferase compare
CSW01_06280 -0.9 -3.1 succinylglutamate desuccinylase compare
CSW01_01860 -0.9 -1.5 SlyX protein compare
CSW01_19125 -0.9 -0.7 branched-chain amino acid ABC transporter compare
CSW01_12445 -0.9 -3.5 DNA repair protein RecO compare
CSW01_00450 -0.9 -1.0 SCP2 domain-containing protein compare
CSW01_11200 -0.9 -2.6 flagellar basal-body rod protein FlgG compare
CSW01_11220 -0.9 -1.9 flagellar basal body rod protein FlgC compare
CSW01_17595 -0.9 -0.6 TIGR02808 family protein compare
CSW01_06675 -0.9 -0.9 (Na+)-NQR maturation NqrM compare
CSW01_11745 -0.9 -1.6 cysteine desulfurase sulfur acceptor subunit CsdE compare
CSW01_05130 -0.9 -2.4 flagellar protein MotY compare
CSW01_17510 -0.9 -0.7 peptidylprolyl isomerase compare
CSW01_14245 -0.9 -1.7 hypothetical protein compare
CSW01_06395 -0.9 -3.3 iron-regulated protein A compare
CSW01_03845 -0.8 -0.9 hypothetical protein compare
CSW01_07090 -0.8 -1.1 type VI secretion system tube protein Hcp compare
CSW01_02160 -0.8 -3.4 MSHA pilin protein MshC compare
CSW01_10020 -0.8 -4.2 ROK family protein compare
CSW01_16395 -0.8 -0.7 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_07005 -0.8 -1.1 hypothetical protein compare
CSW01_05825 -0.8 -2.4 transcriptional regulator HexR compare
CSW01_00110 -0.8 -1.9 hypothetical protein compare
CSW01_08055 -0.8 -1.2 amino acid ABC transporter substrate-binding protein compare
CSW01_15560 -0.8 -0.8 lipocalin compare
CSW01_07300 -0.8 -1.5 lipoate--protein ligase compare
CSW01_07215 -0.8 -1.8 cytochrome-c oxidase, cbb3-type subunit III compare
CSW01_17905 -0.8 -1.8 aquaporin family protein compare
CSW01_16040 -0.8 -1.6 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_07440 -0.8 -1.0 DUF3634 domain-containing protein compare
CSW01_10440 -0.8 -1.2 succinate dehydrogenase flavoprotein subunit compare
CSW01_17060 -0.8 -1.8 DUF2861 domain-containing protein compare
CSW01_12530 -0.8 -2.7 YecA family protein compare
CSW01_06400 -0.8 -2.4 DUF1513 domain-containing protein compare
CSW01_14470 -0.8 -2.0 DUF134 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Vibrio cholerae E7946 ATCC 55056 in phage experiments

For phage ICP1_phage across organisms