Experiment set4IT072 for Cupriavidus basilensis FW507-4G11

Compare to:

R2A with Sodium Chlorite 4 mM

200 most important genes:

  gene name fitness t score description  
RR42_RS04700 -3.3 -1.8 ribonuclease G compare
RR42_RS03835 -2.8 -6.8 molybdate ABC transporter permease conserved
RR42_RS00715 -2.8 -2.7 ferritin compare
RR42_RS01775 -2.7 -6.1 glutamate--cysteine ligase compare
RR42_RS00115 -2.6 -2.3 hypothetical protein compare
RR42_RS05420 -2.5 -4.5 membrane protein compare
RR42_RS12520 -2.3 -6.3 molybdenum cofactor biosynthesis protein MoaE compare
RR42_RS31790 -2.3 -2.0 nitrite reductase compare
RR42_RS01120 -2.3 -8.4 RNA polymerase sigma factor compare
RR42_RS03840 -2.2 -6.6 molybdate ABC transporter substrate-binding protein conserved
RR42_RS21220 -2.2 -1.4 iron transporter FeoB compare
RR42_RS02775 -2.2 -2.3 molecular chaperone SurA compare
RR42_RS26935 -2.1 -5.0 farnesyl-diphosphate farnesyltransferase compare
RR42_RS12530 -2.1 -6.0 molybdenum cofactor biosynthesis protein MoaA conserved
RR42_RS28885 -2.0 -6.3 membrane protein compare
RR42_RS33260 -2.0 -6.6 multidrug MFS transporter compare
RR42_RS32085 -1.9 -1.7 hypothetical protein compare
RR42_RS19055 -1.9 -8.5 sulfite oxidase conserved
RR42_RS18380 -1.9 -3.2 hypothetical protein compare
RR42_RS03140 -1.9 -4.2 molybdenum cofactor biosynthesis protein MoaC compare
RR42_RS12015 -1.9 -2.4 dihydrolipoamide acyltransferase compare
RR42_RS20570 -1.8 -1.2 biopolymer transporter ExbD compare
RR42_RS02500 -1.8 -2.3 TetR family transcriptional regulator compare
RR42_RS15035 -1.8 -5.5 ZIP zinc transporter compare
RR42_RS33250 -1.8 -6.2 tyrosine protein kinase compare
RR42_RS18725 -1.8 -2.6 hypothetical protein compare
RR42_RS07590 -1.7 -5.2 pseudouridine synthase compare
RR42_RS14760 -1.7 -4.8 molybdenum cofactor biosynthesis protein MogA compare
RR42_RS06585 -1.7 -11.6 GTP pyrophosphokinase compare
RR42_RS19060 -1.7 -11.2 sulfoxide reductase catalytic subunit YedY conserved
RR42_RS03095 -1.6 -1.8 succinyl-CoA synthetase subunit beta compare
RR42_RS15745 -1.6 -5.1 group1 glycosyl transferase compare
RR42_RS06250 -1.6 -1.8 dihydrodipicolinate synthase compare
RR42_RS06580 -1.6 -5.0 aminoacrylate peracid reductase compare
RR42_RS15770 -1.6 -4.3 hypothetical protein compare
RR42_RS15735 -1.5 -6.6 pyridoxal phosphate-dependent aminotransferase compare
RR42_RS02705 -1.5 -2.5 Holliday junction DNA helicase RuvA compare
RR42_RS18020 -1.5 -3.6 ornithine acetyltransferase compare
RR42_RS06255 -1.5 -1.7 lipoprotein compare
RR42_RS04895 -1.5 -7.2 serine/threonine protein phosphatase compare
RR42_RS16280 -1.5 -5.1 transcriptional regulator compare
RR42_RS02440 -1.5 -1.6 membrane protein compare
RR42_RS15460 -1.5 -4.7 translocation protein TolB compare
RR42_RS18855 -1.4 -2.9 preprotein translocase compare
RR42_RS15475 -1.4 -5.0 protein tolQ compare
RR42_RS02045 -1.4 -7.4 GTPase compare
RR42_RS17060 -1.4 -8.8 histidine kinase compare
RR42_RS15015 -1.4 -1.0 exodeoxyribonuclease VII small subunit compare
RR42_RS11165 -1.4 -3.9 methionine sulfoxide reductase B conserved
RR42_RS01780 -1.4 -5.6 glutathione synthetase compare
RR42_RS04535 -1.3 -3.1 cysteine synthase compare
RR42_RS20370 -1.3 -1.4 pterin-4-alpha-carbinolamine dehydratase compare
RR42_RS05840 -1.3 -2.2 GCN5 family acetyltransferase compare
RR42_RS19885 -1.3 -1.1 aminoglycoside transporter compare
RR42_RS17885 -1.3 -4.0 ABC transporter permease compare
RR42_RS35250 -1.3 -2.3 alpha/beta hydrolase compare
RR42_RS12590 -1.3 -1.1 50S ribosomal protein L9 compare
RR42_RS08575 -1.3 -1.0 tail protein compare
RR42_RS14055 -1.2 -2.3 elongation factor 4 compare
RR42_RS33255 -1.2 -2.2 protein-tyrosine phosphatase compare
RR42_RS07455 -1.2 -6.0 ABC transporter substrate-binding protein compare
RR42_RS34215 -1.2 -0.9 ferredoxin compare
RR42_RS15335 -1.2 -6.6 peptide methionine sulfoxide reductase compare
RR42_RS09240 -1.2 -2.2 MFS transporter compare
RR42_RS01820 -1.2 -3.4 peptidase S41 compare
RR42_RS15470 -1.2 -1.3 biopolymer transporter ExbD compare
RR42_RS12580 -1.1 -2.5 phosphate transport regulator compare
RR42_RS03365 -1.1 -3.0 fructose ABC transporter, permease component (FrcC) (from data) compare
RR42_RS13910 -1.1 -4.6 glutamate racemase compare
RR42_RS21955 -1.1 -1.5 hypothetical protein compare
RR42_RS13130 -1.1 -2.2 membrane protein compare
RR42_RS03830 -1.1 -4.7 molybdenum ABC transporter ATPase compare
RR42_RS05810 -1.1 -1.3 RNA polymerase sigma factor compare
RR42_RS22585 -1.1 -1.6 MarR family transcriptional regulator compare
RR42_RS14755 -1.1 -2.4 hypothetical protein compare
RR42_RS22395 -1.1 -2.0 hypothetical protein compare
RR42_RS17635 -1.1 -2.0 magnesium transporter CorA compare
RR42_RS20485 -1.1 -3.2 thiol-disulfide isomerase compare
RR42_RS04850 -1.1 -1.5 hypothetical protein compare
RR42_RS01795 -1.1 -6.8 phosphoenolpyruvate-protein phosphotransferase compare
RR42_RS15455 -1.1 -2.9 membrane protein compare
RR42_RS02310 -1.1 -2.1 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
RR42_RS15740 -1.1 -1.0 hypothetical protein compare
RR42_RS04135 -1.0 -1.1 pilus assembly protein CpaB compare
RR42_RS27550 -1.0 -1.0 hypothetical protein compare
RR42_RS01260 -1.0 -5.7 lauroyl acyltransferase compare
RR42_RS11520 -1.0 -2.2 ABC transporter ATP-binding protein compare
RR42_RS20440 -1.0 -0.9 histidine kinase compare
RR42_RS32585 -1.0 -1.5 cytochrome C oxidase compare
RR42_RS33245 -1.0 -4.1 mannose-1-phosphate guanyltransferase compare
RR42_RS27570 -1.0 -1.6 murein hydrolase effector protein compare
RR42_RS31330 -1.0 -1.2 LysR family transcriptional regulator compare
RR42_RS08905 -1.0 -1.9 XRE family transcriptional regulator compare
RR42_RS03530 -1.0 -1.1 hypothetical protein compare
RR42_RS03080 -1.0 -2.1 recombinase RecA compare
RR42_RS11770 -1.0 -1.0 cyclase compare
RR42_RS18840 -1.0 -3.6 2-alkenal reductase compare
RR42_RS14320 -1.0 -4.4 O-succinylhomoserine sulfhydrylase compare
RR42_RS33235 -1.0 -3.9 GDP-mannose 4,6-dehydratase compare
RR42_RS18850 -1.0 -1.2 preprotein translocase subunit TatC compare
RR42_RS21470 -1.0 -1.0 hypothetical protein compare
RR42_RS08865 -1.0 -2.1 hydroxylase compare
RR42_RS33240 -1.0 -6.3 GDP-L-fucose synthase compare
RR42_RS20210 -1.0 -2.1 16S rRNA methyltransferase compare
RR42_RS31530 -1.0 -2.4 histidine kinase compare
RR42_RS12305 -1.0 -1.0 hypothetical protein compare
RR42_RS07885 -0.9 -4.6 chemotaxis protein CheY compare
RR42_RS04735 -0.9 -1.2 hypothetical protein compare
RR42_RS36415 -0.9 -1.7 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
RR42_RS37400 -0.9 -0.8 6-phosphogluconolactonase compare
RR42_RS05890 -0.9 -4.8 glutamine-synthetase adenylyltransferase compare
RR42_RS08490 -0.9 -2.8 phage Rha protein compare
RR42_RS19410 -0.9 -3.2 GntR family transcriptional regulator compare
RR42_RS14790 -0.9 -5.5 cobalamin biosynthesis protein CobD compare
RR42_RS08385 -0.9 -3.0 hypothetical protein compare
RR42_RS06430 -0.9 -1.9 hypothetical protein compare
RR42_RS17565 -0.9 -6.5 LysR family transcriptional regulator compare
RR42_RS07450 -0.9 -4.1 ABC transporter permease compare
RR42_RS06270 -0.9 -3.6 cupin compare
RR42_RS07880 -0.9 -4.6 histidine kinase compare
RR42_RS18485 -0.9 -0.8 glutaredoxin compare
RR42_RS15730 -0.9 -3.3 sugar transferase compare
RR42_RS23220 -0.9 -2.6 MarR family transcriptional regulator compare
RR42_RS26560 -0.9 -2.6 hypothetical protein compare
RR42_RS18140 -0.9 -1.0 MarR family transcriptional regulator compare
RR42_RS01785 -0.9 -2.1 PTS fructose transporter subunit IIA compare
RR42_RS33690 -0.9 -1.5 phosphate acetyltransferase compare
RR42_RS04325 -0.9 -2.2 membrane protein compare
RR42_RS00960 -0.9 -1.8 prolyl-tRNA synthetase compare
RR42_RS06575 -0.9 -3.5 alpha/beta hydrolase compare
RR42_RS05485 -0.9 -0.8 polynucleotide phosphorylase/polyadenylase compare
RR42_RS24690 -0.9 -1.1 hypothetical protein compare
RR42_RS03170 -0.9 -3.1 hypothetical protein compare
RR42_RS36110 -0.9 -3.2 membrane protein compare
RR42_RS14845 -0.9 -1.5 MarR family transcriptional regulator compare
RR42_RS32235 -0.9 -4.6 hopanoid biosynthesis associated radical SAM protein HpnH compare
RR42_RS15790 -0.9 -2.8 aminotransferase class III compare
RR42_RS33500 -0.8 -5.0 4-hydroxyphenylpyruvate dioxygenase compare
RR42_RS25840 -0.8 -3.0 ArsR family transcriptional regulator compare
RR42_RS19005 -0.8 -3.6 3-dehydroquinate synthase compare
RR42_RS06925 -0.8 -1.3 hypothetical protein compare
RR42_RS23125 -0.8 -1.3 hypothetical protein compare
RR42_RS34610 -0.8 -1.9 hydroxyacid dehydrogenase compare
RR42_RS26540 -0.8 -0.9 3-phosphoglycerate dehydrogenase compare
RR42_RS17970 -0.8 -1.4 hypothetical protein compare
RR42_RS13365 -0.8 -1.0 peptidase P60 compare
RR42_RS16950 -0.8 -3.2 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
RR42_RS08165 -0.8 -2.3 hypothetical protein compare
RR42_RS35695 -0.8 -2.4 flagellar L-ring protein FlgH compare
RR42_RS19635 -0.8 -1.6 hypothetical protein compare
RR42_RS19485 -0.8 -0.8 general secretion pathway protein GspH compare
RR42_RS36570 -0.8 -1.3 prevent-host-death protein compare
RR42_RS20365 -0.8 -4.9 phenylalanine 4-monooxygenase (EC 1.14.16.1) (from data) compare
RR42_RS34210 -0.8 -2.1 hypothetical protein compare
RR42_RS06930 -0.8 -2.1 hypothetical protein compare
RR42_RS13760 -0.8 -2.9 copper resistance protein CopQ compare
RR42_RS09515 -0.8 -1.7 hypothetical protein compare
RR42_RS14070 -0.8 -5.0 sugar dehydratase compare
RR42_RS12555 -0.8 -3.9 alkyl hydroperoxide reductase compare
RR42_RS17730 -0.8 -1.6 hypothetical protein compare
RR42_RS21765 -0.8 -1.2 3-oxoacyl-ACP reductase compare
RR42_RS27035 -0.8 -2.1 hypothetical protein compare
RR42_RS06700 -0.8 -2.4 hypothetical protein compare
RR42_RS08030 -0.8 -1.5 hypothetical protein compare
RR42_RS30930 -0.8 -4.2 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
RR42_RS02555 -0.8 -2.2 transcriptional regulator compare
RR42_RS36170 -0.8 -2.0 hypothetical protein compare
RR42_RS06335 -0.7 -1.0 cyclophilin compare
RR42_RS20855 -0.7 -2.9 cold-shock protein compare
RR42_RS17165 -0.7 -2.2 hypothetical protein compare
RR42_RS15450 -0.7 -1.8 Tol system periplasmic component YbgF compare
RR42_RS02420 -0.7 -0.6 SAM-dependent methyltransferase compare
RR42_RS04300 -0.7 -1.5 nitrogen regulatory protein P-II 1 compare
RR42_RS04255 -0.7 -1.4 chemotaxis protein CheW compare
RR42_RS22315 -0.7 -2.1 LysR family transcriptional regulator compare
RR42_RS14945 -0.7 -1.7 hypothetical protein compare
RR42_RS33495 -0.7 -6.1 L-phenylalanine:H+ symporter AroP (from data) compare
RR42_RS21125 -0.7 -1.1 membrane protein compare
RR42_RS33600 -0.7 -0.9 oxidoreductase compare
RR42_RS35715 -0.7 -2.4 flagellar basal body rod modification protein FlgD compare
RR42_RS02525 -0.7 -2.8 enoyl-CoA hydratase compare
RR42_RS06630 -0.7 -1.2 integration host factor subunit alpha compare
RR42_RS17055 -0.7 -2.6 LuxR family transcriptional regulator compare
RR42_RS08260 -0.7 -1.3 hypothetical protein compare
RR42_RS04320 -0.7 -2.3 cell division protein FtsK compare
RR42_RS14410 -0.7 -1.3 leucine/isoleucine/valine transporter ATP-binding subunit compare
RR42_RS17930 -0.7 -2.2 RNA pyrophosphohydrolase compare
RR42_RS20655 -0.7 -3.9 multidrug transporter compare
RR42_RS17400 -0.7 -2.0 queuine tRNA-ribosyltransferase compare
RR42_RS19010 -0.7 -3.2 shikimate kinase compare
RR42_RS12050 -0.7 -3.1 DNA polymerase compare
RR42_RS19065 -0.7 -3.9 transcriptional regulator compare
RR42_RS05755 -0.7 -1.4 enoyl-CoA hydratase compare
RR42_RS15865 -0.7 -1.1 uracil phosphoribosyltransferase compare
RR42_RS22745 -0.7 -2.1 phosphoribosylglycinamide formyltransferase compare
RR42_RS18430 -0.7 -1.6 prevent-host-death protein compare
RR42_RS00410 -0.7 -2.1 transcriptional regulator compare
RR42_RS14365 -0.7 -0.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS25200 -0.7 -2.5 TetR family transcriptional regulator compare
RR42_RS16495 -0.7 -1.6 branched-chain amino acid aminotransferase compare


Specific Phenotypes

For 8 genes in this experiment

For stress Sodium Chlorite in Cupriavidus basilensis FW507-4G11

For stress Sodium Chlorite across organisms