Experiment set4IT072 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

2-Deoxyadenosine 5-monophosphate 2.5 mM carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_04390 +2.6 18.8 ATP-binding cassette, subfamily B compare
H281DRAFT_04391 +2.4 16.2 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_00885 +1.8 8.7 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ compare
H281DRAFT_01749 +1.7 4.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_04270 +1.7 10.5 L-glutamate-binding protein /L-aspartate-binding protein compare
H281DRAFT_06120 +1.7 2.1 hypothetical protein compare
H281DRAFT_02683 +1.7 2.4 xanthine dehydrogenase accessory factor compare
H281DRAFT_01184 +1.6 2.2 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_05705 +1.5 2.4 hypothetical protein compare
H281DRAFT_03440 +1.4 1.8 PAP2 superfamily protein compare
H281DRAFT_04931 +1.4 1.7 Surfactin synthase thioesterase subunit compare
H281DRAFT_01436 +1.2 2.5 NTE family protein compare
H281DRAFT_04850 +1.2 3.0 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase compare
H281DRAFT_04713 +1.2 6.6 membrane-associated protein compare
H281DRAFT_00317 +1.2 6.2 O-antigen ligase compare
H281DRAFT_00722 +1.2 2.0 transcriptional regulator, Crp/Fnr family compare
H281DRAFT_03502 +1.2 2.7 2-aminoethylphosphonate transport system permease protein compare
H281DRAFT_00377 +1.1 2.4 N-carbamoyl-L-amino-acid hydrolase compare
H281DRAFT_05540 +1.1 3.4 transcriptional regulator, LacI family compare
H281DRAFT_04386 +1.1 4.4 hypothetical protein compare
H281DRAFT_04922 +1.1 2.0 iron complex transport system permease protein compare
H281DRAFT_04880 +1.1 2.1 PRC-barrel domain-containing protein compare
H281DRAFT_01675 +1.1 5.3 PAS/PAC sensor hybrid histidine kinase (EC 2.7.13.3) compare
H281DRAFT_00895 +1.1 3.7 trigger factor compare
H281DRAFT_02791 +1.1 1.8 apolipoprotein D and lipocalin family protein compare
H281DRAFT_00927 +1.1 5.0 UPF0755 protein compare
H281DRAFT_01838 +1.1 3.6 regulator RcnB of Ni and Co efflux compare
H281DRAFT_05816 +1.1 8.6 soluble lytic murein transglycosylase compare
H281DRAFT_02224 +1.1 2.7 rod shape-determining protein MreC compare
H281DRAFT_04220 +1.1 5.7 Cytochrome c, mono- and diheme variants compare
H281DRAFT_01311 +1.1 2.1 fructose-bisphosphate aldolase compare
H281DRAFT_00315 +1.0 3.6 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_03023 +1.0 1.4 Protein of unknown function (DUF2866) compare
H281DRAFT_02322 +1.0 2.3 hypothetical protein compare
H281DRAFT_06511 +1.0 1.5 reactive intermediate/imine deaminase compare
H281DRAFT_04858 +1.0 1.5 hypothetical protein compare
H281DRAFT_04848 +1.0 3.9 hypothetical protein compare
H281DRAFT_01390 +1.0 1.6 hypothetical protein compare
H281DRAFT_06003 +1.0 3.4 Pimeloyl-ACP methyl ester carboxylesterase compare
H281DRAFT_02503 +1.0 2.3 Peroxiredoxin compare
H281DRAFT_00470 +1.0 6.5 murein-DD-endopeptidase. Serine peptidase. MEROPS family S11 compare
H281DRAFT_02148 +1.0 2.6 cytochrome c compare
H281DRAFT_00390 +1.0 1.6 Beta-barrel assembly machine subunit BamC compare
H281DRAFT_02864 +1.0 2.6 precorrin-8X methylmutase compare
H281DRAFT_02702 +0.9 2.3 dihydroxyacetone kinase DhaK subunit compare
H281DRAFT_01111 +0.9 2.6 transcriptional regulator, DeoR family compare
H281DRAFT_01880 +0.9 1.8 two component transcriptional regulator, LuxR family compare
H281DRAFT_04826 +0.9 2.9 rhamnosyltransferase compare
H281DRAFT_03256 +0.9 2.3 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase compare
H281DRAFT_04400 +0.9 6.9 membrane-bound lytic murein transglycosylase D compare
H281DRAFT_04781 +0.9 1.4 putative colanic acid biosynthesis acetyltransferase WcaF compare
H281DRAFT_00998 +0.9 1.0 outer membrane protein, multidrug efflux system compare
H281DRAFT_06578 +0.9 2.8 NADP-dependent 3-hydroxy acid dehydrogenase YdfG compare
H281DRAFT_03303 +0.9 2.3 NAD+ synthase (glutamine-hydrolysing) compare
H281DRAFT_04857 +0.9 1.5 hypothetical protein compare
H281DRAFT_00405 +0.9 1.7 Predicted small secreted protein compare
H281DRAFT_05351 +0.9 2.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_04851 +0.9 4.3 NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC compare
H281DRAFT_01305 +0.9 2.0 hypothetical protein compare
H281DRAFT_03460 +0.9 1.1 Protein of unknown function (DUF2950) compare
H281DRAFT_03849 +0.9 2.0 protein of unknown function (DUF4863) compare
H281DRAFT_01748 +0.9 4.2 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
H281DRAFT_04844 +0.9 6.4 Glycosyltransferase, GT2 family compare
H281DRAFT_03790 +0.9 1.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
H281DRAFT_00875 +0.9 2.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_04924 +0.9 4.3 iron complex outermembrane recepter protein compare
H281DRAFT_06281 +0.8 5.3 MJ0042 family finger-like domain-containing protein compare
H281DRAFT_04923 +0.8 3.9 iron complex transport system substrate-binding protein compare
H281DRAFT_05908 +0.8 2.3 hypothetical protein compare
H281DRAFT_06253 +0.8 4.3 cell division protein ZapD compare
H281DRAFT_03613 +0.8 3.7 hypothetical protein compare
H281DRAFT_00140 +0.8 3.2 cobalamin-5'-phosphate synthase compare
H281DRAFT_03389 +0.8 2.5 transcriptional regulator, LysR family compare
H281DRAFT_00522 +0.8 2.4 GTP-binding protein HflX compare
H281DRAFT_05983 +0.8 1.4 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_04544 +0.8 2.1 diacylglycerol kinase (ATP) compare
H281DRAFT_05811 +0.8 4.0 UPF0271 protein compare
H281DRAFT_00316 +0.8 4.2 ADP-heptose:LPS heptosyltransferase compare
H281DRAFT_05204 +0.8 3.6 hypothetical protein compare
H281DRAFT_00130 +0.8 2.2 Predicted secreted protein compare
H281DRAFT_01612 +0.8 3.6 2OG-Fe(II) oxygenase superfamily protein compare
H281DRAFT_04993 +0.8 1.8 hypothetical protein compare
H281DRAFT_01318 +0.8 2.2 hypothetical protein compare
H281DRAFT_06322 +0.8 2.7 LPS-assembly lipoprotein compare
H281DRAFT_02102 +0.8 1.8 Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC compare
H281DRAFT_05945 +0.8 2.1 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_04250 +0.8 2.9 DNA-binding protein Fis compare
H281DRAFT_04064 +0.8 2.8 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
H281DRAFT_02058 +0.8 1.2 cholesterol transport system auxiliary component compare
H281DRAFT_03047 +0.7 1.2 protein of unknown function (DUF4148) compare
H281DRAFT_05784 +0.7 1.9 flagellar assembly protein FliH compare
H281DRAFT_01766 +0.7 1.2 cytochrome c oxidase subunit 2 compare
H281DRAFT_01047 +0.7 1.5 GTP cyclohydrolase II compare
H281DRAFT_04996 +0.7 2.1 type III secretion protein C compare
H281DRAFT_06474 +0.7 1.2 amino acid ABC transporter membrane protein 1, PAAT family compare
H281DRAFT_02559 +0.7 2.1 hypothetical protein compare
H281DRAFT_02985 +0.7 1.5 copper chaperone compare
H281DRAFT_06296 +0.7 1.5 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_06445 +0.7 1.2 Molybdopterin synthase catalytic subunit compare
H281DRAFT_01033 +0.7 1.1 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_05778 +0.7 1.3 flagellar motor switch protein FliN/FliY compare
H281DRAFT_05376 +0.7 1.4 hypothetical protein compare
H281DRAFT_05022 +0.7 1.8 two component transcriptional regulator, LuxR family compare
H281DRAFT_04798 +0.7 2.0 Predicted xylanase/chitin deacetylase compare
H281DRAFT_06269 +0.7 1.6 hypoxanthine phosphoribosyltransferase compare
H281DRAFT_03409 +0.7 1.1 Protein of unknown function (DUF3072) compare
H281DRAFT_00946 +0.7 1.9 protein-tyrosine phosphatase compare
H281DRAFT_01457 +0.7 2.5 hypothetical protein compare
H281DRAFT_02813 +0.7 1.3 Uncharacterized protein conserved in bacteria compare
H281DRAFT_01201 +0.7 2.4 3-hydroxyisobutyrate dehydrogenase compare
H281DRAFT_06468 +0.7 2.3 Ribulose-5-phosphate 4-epimerase/Fuculose-1-phosphate aldolase compare
H281DRAFT_01095 +0.7 1.5 Glyoxylase, beta-lactamase superfamily II compare
H281DRAFT_05456 +0.7 2.3 2-hydroxy-6-oxonona-2,4-dienedioate hydrolase compare
H281DRAFT_04929 +0.7 0.8 hypothetical protein compare
H281DRAFT_00236 +0.7 3.3 sigma54 specific transcriptional regulator, Fis family compare
H281DRAFT_02818 +0.7 1.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_06365 +0.7 2.0 pilus assembly protein CpaC compare
H281DRAFT_04849 +0.7 1.6 UDP-glucose 4-epimerase compare
H281DRAFT_04792 +0.7 1.0 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_04552 +0.7 2.9 acetolactate synthase, small subunit compare
H281DRAFT_04448 +0.7 2.5 L-threonine aldolase compare
H281DRAFT_05122 +0.7 3.6 host factor-I protein compare
H281DRAFT_00379 +0.7 0.9 dihydroorotate oxidase B, catalytic subunit /dihydrouracil dehydrogenase (NAD+) /dihydropyrimidine dehydrogenase (NADP+) compare
H281DRAFT_04219 +0.7 4.1 Cytochrome c553 compare
H281DRAFT_05350 +0.7 2.3 Signal transduction histidine kinase compare
H281DRAFT_03232 +0.7 2.7 carbohydrate ABC transporter membrane protein 2, CUT1 family compare
H281DRAFT_00240 +0.7 4.6 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_00603 +0.7 1.9 ZipA, C-terminal FtsZ-binding domain compare
H281DRAFT_01145 +0.7 1.8 hopanoid biosynthesis associated protein HpnK compare
H281DRAFT_00487 +0.7 1.2 bacterial peptide chain release factor 2 (bRF-2) compare
H281DRAFT_00678 +0.7 2.5 hypothetical protein compare
H281DRAFT_02952 +0.7 2.2 fructuronate reductase compare
H281DRAFT_01923 +0.7 1.6 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) compare
H281DRAFT_00201 +0.7 1.8 hypothetical protein compare
H281DRAFT_03345 +0.7 2.7 NHL repeat-containing protein compare
H281DRAFT_03061 +0.7 2.0 hypothetical protein compare
H281DRAFT_05707 +0.7 3.3 thiol:disulfide interchange protein DsbC compare
H281DRAFT_02680 +0.7 3.1 succinate semialdehyde dehydrogenase compare
H281DRAFT_00759 +0.7 2.6 sulfonate transport system permease protein compare
H281DRAFT_04958 +0.7 1.8 glutamate racemase compare
H281DRAFT_05914 +0.7 1.9 hypothetical protein compare
H281DRAFT_00658 +0.7 1.3 transcriptional regulator, IclR family compare
H281DRAFT_03915 +0.7 2.6 UDPglucose 6-dehydrogenase compare
H281DRAFT_01881 +0.7 1.3 two-component system, LuxR family, sensor kinase FixL compare
H281DRAFT_01584 +0.7 1.0 enamidase compare
H281DRAFT_04759 +0.6 1.2 hypothetical protein compare
H281DRAFT_04656 +0.6 2.8 Predicted transcriptional regulator compare
H281DRAFT_06346 +0.6 1.9 Predicted deacylase compare
H281DRAFT_02508 +0.6 0.8 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_03312 +0.6 3.3 PAS domain S-box-containing protein compare
H281DRAFT_03703 +0.6 1.8 NADP-dependent 3-hydroxy acid dehydrogenase YdfG compare
H281DRAFT_01621 +0.6 1.3 transcriptional regulator, AraC family compare
H281DRAFT_00640 +0.6 2.0 putative regulator of deoxyribonate oxidation (from data) compare
H281DRAFT_06286 +0.6 2.1 Thiol-disulfide isomerase or thioredoxin compare
H281DRAFT_04228 +0.6 3.5 homodimeric glycerol 3-phosphate dehydrogenase (quinone) compare
H281DRAFT_05668 +0.6 3.0 dinuclear metal center protein, YbgI/SA1388 family compare
H281DRAFT_01599 +0.6 1.2 GTP cyclohydrolase I compare
H281DRAFT_00088 +0.6 1.4 amino acid ABC transporter substrate-binding protein, PAAT family compare
H281DRAFT_06295 +0.6 1.5 2-keto-3-deoxy-phosphogalactonate aldolase compare
H281DRAFT_06070 +0.6 1.8 FimV C-terminal domain-containing protein compare
H281DRAFT_03154 +0.6 0.7 two-component system, NarL family, sensor kinase compare
H281DRAFT_00731 +0.6 1.1 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_05079 +0.6 1.6 small conductance mechanosensitive channel compare
H281DRAFT_00870 +0.6 1.5 putative ABC transport system ATP-binding protein compare
H281DRAFT_03282 +0.6 2.4 ADP-heptose:LPS heptosyltransferase compare
H281DRAFT_02204 +0.6 3.0 GTPase, G3E family compare
H281DRAFT_04229 +0.6 3.6 glycerol kinase compare
H281DRAFT_06385 +0.6 1.1 hypothetical protein compare
H281DRAFT_05098 +0.6 1.0 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_04008 +0.6 2.0 RNAse PH compare
H281DRAFT_03066 +0.6 2.7 transcriptional regulator, LysR family compare
H281DRAFT_02054 +0.6 3.6 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 compare
H281DRAFT_03190 +0.6 1.4 multidrug efflux pump compare
H281DRAFT_03245 +0.6 2.8 Uncharacterized iron-regulated membrane protein compare
H281DRAFT_03883 +0.6 1.5 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
H281DRAFT_05803 +0.6 2.1 dipeptide transport system permease protein compare
H281DRAFT_01989 +0.6 2.0 Protein of unknown function (DUF2909) compare
H281DRAFT_04594 +0.6 2.4 putative oxepin-CoA hydrolase (EC 3.3.2.12) (from data) compare
H281DRAFT_03473 +0.6 2.6 hypothetical protein compare
H281DRAFT_03419 +0.6 1.9 4-carboxy-4-hydroxy-2-oxoadipate aldolase (EC 4.1.3.-) compare
H281DRAFT_03489 +0.6 3.2 Acyl-CoA dehydrogenase compare
H281DRAFT_00855 +0.6 1.6 SSU ribosomal protein S12P methylthiotransferase compare
H281DRAFT_01984 +0.6 4.0 protein SCO1/2 compare
H281DRAFT_03240 +0.6 2.8 pyruvate dehydrogenase (quinone) compare
H281DRAFT_00323 +0.6 1.7 GAF domain-containing protein compare
H281DRAFT_00285 +0.6 2.1 PhnB protein compare
H281DRAFT_06036 +0.6 2.0 Membrane-associated phospholipid phosphatase compare
H281DRAFT_00269 +0.6 1.7 phenazine biosynthesis protein PhzF family compare
H281DRAFT_03719 +0.6 1.8 Zn-dependent hydrolases, including glyoxylases compare
H281DRAFT_04234 +0.6 0.7 transcriptional regulator, XRE family with cupin sensor compare
H281DRAFT_05767 +0.6 2.2 flagellar basal-body rod protein FlgG compare
H281DRAFT_01467 +0.6 1.4 hypothetical protein compare
H281DRAFT_02599 +0.6 1.5 hypothetical protein compare
H281DRAFT_02984 +0.6 2.5 Uncharacterized protein conserved in bacteria compare
H281DRAFT_05536 +0.6 1.5 hypothetical protein compare
H281DRAFT_05835 +0.6 2.4 3-hydroxyisobutyrate dehydrogenase compare
H281DRAFT_05136 +0.6 2.1 response regulator receiver sensor signal transduction histidine kinase (EC 2.7.13.3) compare
H281DRAFT_01261 +0.6 1.9 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_00989 +0.6 1.4 glycine betaine/proline transport system substrate-binding protein compare
H281DRAFT_03428 +0.6 1.4 cytochrome bo3 quinol oxidase subunit 3 (EC 1.10.3.-) compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source 2-Deoxyadenosine 5-monophosphate in Paraburkholderia bryophila 376MFSha3.1

For carbon source 2-Deoxyadenosine 5-monophosphate across organisms