Experiment set4IT071 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Sodium acetate 17 mM

200 most important genes:

  gene name fitness t score description  
AO353_22685 -3.9 -2.7 peroxidase compare
AO353_00430 -3.1 -4.1 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_12115 -2.8 -3.3 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_13100 -2.8 -2.6 GTPase RsgA compare
AO353_07315 -2.7 -4.0 rRNA methyltransferase compare
AO353_02250 -2.5 -2.4 chorismate synthase compare
AO353_05625 -2.3 -2.6 transcription elongation factor GreA compare
AO353_18540 -2.3 -3.4 pseudouridine synthase compare
AO353_11750 -2.3 -2.6 ATPase compare
AO353_04190 -2.2 -2.8 glycerol-3-phosphate dehydrogenase compare
AO353_09240 -2.2 -2.9 acetylglutamate kinase compare
AO353_11730 -2.1 -8.6 glutamate--cysteine ligase compare
AO353_07355 -2.1 -5.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_06040 -1.9 -4.0 exodeoxyribonuclease V subunit alpha compare
AO353_03580 -1.9 -3.6 ATP-dependent DNA helicase RuvB compare
AO353_08110 -1.8 -5.8 glutathione synthetase compare
AO353_02070 -1.8 -6.7 prephenate dehydratase compare
AO353_10670 -1.7 -6.8 shikimate dehydrogenase compare
AO353_06495 -1.7 -5.0 gamma-glutamyl phosphate reductase compare
AO353_04520 -1.7 -5.7 elongation factor 4 compare
AO353_13925 -1.7 -2.6 XRE family transcriptional regulator compare
AO353_15410 -1.7 -2.6 hypothetical protein compare
AO353_03590 -1.6 -4.1 crossover junction endodeoxyribonuclease RuvC compare
AO353_26390 -1.6 -2.0 glyoxalase compare
AO353_16940 -1.6 -6.0 deoxycytidine triphosphate deaminase compare
AO353_09890 -1.6 -4.5 phosphate ABC transporter ATP-binding protein compare
AO353_09250 -1.6 -3.3 exodeoxyribonuclease III compare
AO353_06850 -1.6 -4.7 MFS transporter compare
AO353_09000 -1.6 -5.2 argininosuccinate lyase compare
AO353_12105 -1.6 -6.2 peptidase S41 compare
AO353_08165 -1.6 -2.9 pyrroline-5-carboxylate reductase compare
AO353_04175 -1.6 -4.6 glycerol uptake facilitator GlpF compare
AO353_06045 -1.6 -6.2 exodeoxyribonuclease V subunit beta compare
AO353_12500 -1.6 -2.2 shikimate kinase compare
AO353_05690 -1.5 -3.6 SsrA-binding protein compare
AO353_07155 -1.5 -5.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_16805 -1.5 -5.3 recombinase RecA compare
AO353_23590 -1.5 -1.9 ArsR family transcriptional regulator compare
AO353_22800 -1.5 -2.8 sulfite reductase compare
AO353_00825 -1.5 -3.9 porin compare
AO353_03585 -1.5 -3.0 ATP-dependent DNA helicase RuvA compare
AO353_21290 -1.4 -2.9 hypothetical protein compare
AO353_01410 -1.4 -3.2 ribonuclease E compare
AO353_20185 -1.4 -5.2 DNA-binding protein compare
AO353_27695 -1.4 -6.1 isocitrate dehydrogenase compare
AO353_09720 -1.4 -1.8 hypothetical protein compare
AO353_04365 -1.4 -4.7 recombinase XerD compare
AO353_06050 -1.4 -5.4 exodeoxyribonuclease V subunit gamma compare
AO353_08115 -1.3 -5.3 energy transducer TonB compare
AO353_14940 -1.3 -3.0 malate:quinone oxidoreductase compare
AO353_07105 -1.3 -1.5 biotin--protein ligase compare
AO353_10930 -1.3 -6.4 DNA polymerase I compare
AO353_14220 -1.3 -1.4 ribosomal large subunit pseudouridine synthase D compare
AO353_24130 -1.3 -2.6 hypothetical protein compare
AO353_12420 -1.3 -3.1 predicted FeS cluster maintenance protein (from data) compare
AO353_24260 -1.3 -2.0 hypothetical protein compare
AO353_06100 -1.3 -2.1 thymidylate synthase compare
AO353_27380 -1.2 -2.3 pyocin R2, holin compare
AO353_20170 -1.2 -4.0 trigger factor compare
AO353_27720 -1.2 -3.9 cupin compare
AO353_03250 -1.2 -2.0 gluconokinase compare
AO353_03795 -1.2 -3.5 fumarate hydratase compare
AO353_16855 -1.2 -3.4 tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA compare
AO353_17885 -1.2 -1.4 hypothetical protein compare
AO353_27650 -1.2 -3.5 cell division protein FtsK compare
AO353_03615 -1.2 -2.5 cold-shock protein compare
AO353_02000 -1.2 -2.4 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_09905 -1.1 -6.4 phosphate-binding protein compare
AO353_08685 -1.1 -5.6 N-acetylglutamate synthase compare
AO353_06585 -1.1 -5.2 hypothetical protein compare
AO353_04105 -1.1 -5.6 argininosuccinate synthase compare
AO353_04240 -1.1 -1.6 chemotaxis protein CheW compare
AO353_21625 -1.1 -1.9 Fe/S biogenesis protein NfuA compare
AO353_22700 -1.1 -1.7 LexA family transcriptional regulator compare
AO353_02710 -1.1 -7.0 (p)ppGpp synthetase compare
AO353_20565 -1.1 -1.3 tRNA-Ala compare
AO353_10445 -1.1 -1.5 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_06415 -1.1 -3.3 hypothetical protein compare
AO353_13225 -1.1 -2.3 50S ribosomal protein L9 compare
AO353_05125 -1.1 -3.7 BolA family transcriptional regulator compare
AO353_03710 -1.1 -1.7 formyltetrahydrofolate deformylase compare
AO353_07075 -1.1 -3.0 elongation factor Tu compare
AO353_14150 -1.1 -1.6 peptidylprolyl isomerase compare
AO353_21430 -1.0 -2.3 hypothetical protein compare
AO353_18305 -1.0 -2.7 RNA helicase compare
AO353_23835 -1.0 -1.7 hypothetical protein compare
AO353_14370 -1.0 -4.5 glucose-6-phosphate isomerase compare
AO353_02235 -1.0 -4.0 acireductone dioxygenase compare
AO353_09315 -1.0 -6.4 LysR family transcriptional regulator compare
AO353_15905 -1.0 -4.4 outer membrane protein assembly factor BamB compare
AO353_04355 -1.0 -1.7 homoserine dehydrogenase compare
AO353_04565 -1.0 -4.1 nucleoid-associated protein compare
AO353_03670 -1.0 -3.4 ornithine acetyltransferase compare
AO353_12090 -1.0 -2.3 imidazole glycerol phosphate synthase subunit HisF compare
AO353_17035 -1.0 -4.0 hypothetical protein compare
AO353_14740 -1.0 -2.6 GTP-binding protein compare
AO353_17855 -1.0 -2.2 ribonuclease D compare
AO353_14775 -1.0 -4.2 hypothetical protein compare
AO353_11710 -1.0 -3.5 taurine dioxygenase compare
AO353_13140 -1.0 -3.7 tRNA dimethylallyltransferase compare
AO353_19070 -1.0 -2.5 hypothetical protein compare
AO353_02020 -1.0 -3.3 hypothetical protein compare
AO353_18425 -1.0 -3.1 hypothetical protein compare
AO353_27000 -1.0 -1.7 hypothetical protein compare
AO353_02010 -1.0 -4.2 glycosyl transferase family 1 compare
AO353_13245 -1.0 -5.3 hypothetical protein compare
AO353_12245 -1.0 -2.9 hypothetical protein compare
AO353_10320 -0.9 -1.7 hypothetical protein compare
AO353_17165 -0.9 -2.3 ATP-dependent helicase compare
AO353_20815 -0.9 -2.4 LacI family transcriptional regulator compare
AO353_09060 -0.9 -1.7 hypothetical protein compare
AO353_12690 -0.9 -0.9 acyl carrier protein compare
AO353_05550 -0.9 -4.3 pseudouridine synthase compare
AO353_08980 -0.9 -2.4 heme biosynthesis operon protein HemX compare
AO353_00650 -0.9 -1.7 cytochrome biogenesis protein compare
AO353_25615 -0.9 -3.5 2-methylcitrate dehydratase compare
AO353_02100 -0.9 -2.2 phosphoglycolate phosphatase compare
AO353_09150 -0.9 -2.6 cytochrome C2 compare
AO353_13200 -0.9 -5.9 exoribonuclease R compare
AO353_15480 -0.9 -1.7 hypothetical protein compare
AO353_02005 -0.9 -1.3 hypothetical protein compare
AO353_14495 -0.9 -5.8 acetolactate synthase 3 catalytic subunit compare
AO353_11180 -0.9 -7.8 large adhesive protein compare
AO353_09915 -0.9 -4.9 long-chain acyl-CoA thioester hydrolase compare
AO353_15445 -0.9 -2.4 disulfide bond formation protein B compare
AO353_18780 -0.9 -4.0 cobyrinic acid a,c-diamide synthase compare
AO353_29005 -0.9 -1.8 hypothetical protein compare
AO353_20175 -0.9 -2.2 ATP-dependent Clp protease proteolytic subunit compare
AO353_10510 -0.9 -1.1 benzoate transporter compare
AO353_05240 -0.9 -1.8 rod shape-determining protein MreD compare
AO353_12710 -0.9 -1.4 thioredoxin compare
AO353_26045 -0.9 -1.6 hypothetical protein compare
AO353_14990 -0.8 -1.5 hypothetical protein compare
AO353_21635 -0.8 -3.0 cobalamin biosynthesis protein CobE compare
AO353_18660 -0.8 -4.8 AAA family ATPase compare
AO353_26985 -0.8 -3.1 hypothetical protein compare
AO353_09895 -0.8 -4.4 phosphate ABC transporter permease compare
AO353_19060 -0.8 -3.1 CysB family transcriptional regulator compare
AO353_22520 -0.8 -1.6 hypothetical protein compare
AO353_07250 -0.8 -1.3 polyamine ABC transporter permease compare
AO353_00265 -0.8 -1.9 hypothetical protein compare
AO353_02810 -0.8 -4.3 histidine kinase compare
AO353_11185 -0.8 -5.9 channel protein TolC compare
AO353_03275 -0.8 -1.8 LysR family transcriptional regulator compare
AO353_05145 -0.8 -3.4 ABC transporter permease compare
AO353_18840 -0.8 -2.5 flagellar biosynthesis protein FlhB compare
AO353_01355 -0.8 -4.1 3-oxoacyl-ACP synthase compare
AO353_01970 -0.8 -5.2 hypothetical protein compare
AO353_13300 -0.8 -1.5 LOG family protein compare
AO353_04340 -0.8 -1.4 hypothetical protein compare
AO353_01885 -0.8 -4.2 hypothetical protein compare
AO353_04835 -0.8 -5.3 fusaric acid resistance protein compare
AO353_25640 -0.8 -1.2 AsnC family transcriptional regulator compare
AO353_23415 -0.8 -2.8 lysine transporter LysE compare
AO353_19145 -0.8 -2.7 protease HtpX compare
AO353_15250 -0.8 -2.1 cytochrome B compare
AO353_27500 -0.8 -1.5 hypothetical protein compare
AO353_01975 -0.8 -4.0 glycosyl transferase compare
AO353_02885 -0.8 -2.0 flagellar biosynthesis protein FlgN compare
AO353_11850 -0.8 -2.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_04825 -0.8 -3.5 hypothetical protein compare
AO353_05150 -0.8 -2.7 ABC transporter ATP-binding protein compare
AO353_23495 -0.8 -1.5 SAM-dependent methyltransferase compare
AO353_01165 -0.8 -3.0 cytochrome C compare
AO353_13580 -0.7 -2.4 copper resistance protein CopZ compare
AO353_12935 -0.7 -2.2 glycosyltransferase compare
AO353_00635 -0.7 -1.8 hypothetical protein compare
AO353_01675 -0.7 -2.6 transcriptional regulator compare
AO353_12045 -0.7 -3.1 iron transporter compare
AO353_20120 -0.7 -2.0 hypothetical protein compare
AO353_23840 -0.7 -2.1 hypothetical protein compare
AO353_02460 -0.7 -3.1 hypothetical protein compare
AO353_04155 -0.7 -4.9 ornithine carbamoyltransferase compare
AO353_25925 -0.7 -1.3 hypothetical protein compare
AO353_01995 -0.7 -5.2 hypothetical protein compare
AO353_09040 -0.7 -1.3 diaminopimelate epimerase compare
AO353_27135 -0.7 -2.6 hypothetical protein compare
AO353_23245 -0.7 -1.5 DNA-3-methyladenine glycosylase compare
AO353_11195 -0.7 -5.5 hemolysin secretion protein D compare
AO353_08295 -0.7 -2.8 twin-arginine translocation pathway signal protein compare
AO353_15900 -0.7 -1.4 GTP-binding protein compare
AO353_21560 -0.7 -2.7 type VI secretion protein compare
AO353_18505 -0.7 -1.3 translation initiation factor 2 compare
AO353_27245 -0.7 -2.6 lysozyme compare
AO353_12390 -0.7 -1.9 poly(3-hydroxyalkanoate) granule-associated protein PhaI compare
AO353_12125 -0.7 -3.4 glutaredoxin compare
AO353_26835 -0.7 -1.7 transcriptional regulator compare
AO353_11170 -0.7 -4.5 hypothetical protein compare
AO353_26450 -0.7 -2.1 hypothetical protein compare
AO353_20510 -0.7 -1.1 amidase compare
AO353_09900 -0.7 -4.7 phosphate ABC transporter permease compare
AO353_24175 -0.7 -2.4 hypothetical protein compare
AO353_02075 -0.7 -4.3 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_10950 -0.7 -4.3 thiol:disulfide interchange protein compare
AO353_00250 -0.7 -1.8 hypothetical protein compare
AO353_02720 -0.7 -2.8 cysteine synthase compare
AO353_18985 -0.7 -1.8 hypothetical protein compare
AO353_18095 -0.6 -1.9 hypothetical protein compare
AO353_01405 -0.6 -2.9 23S rRNA pseudouridylate synthase compare
AO353_00495 -0.6 -1.0 DNA topoisomerase I compare


Specific Phenotypes

For 3 genes in this experiment

For stress Sodium acetate in Pseudomonas fluorescens FW300-N2E3

For stress Sodium acetate across organisms