Experiment set4IT071 for Pseudomonas fluorescens FW300-N1B4

Compare to:

L-Glutamine carbon source

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_6 -3.8 -4.5 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_2880 -3.8 -11.0 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_1624 -3.4 -7.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_1831 -3.3 -10.3 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_2548 -3.3 -6.9 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_2384 -3.3 -10.9 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_2303 -3.3 -14.2 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_1408 -3.2 -4.3 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_1830 -3.2 -9.3 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_3697 -3.2 -8.5 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_2112 -3.1 -14.5 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_2282 -3.1 -8.5 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2545 -3.0 -12.6 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_1067 -2.9 -6.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_1565 -2.9 -4.3 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_15 -2.9 -3.8 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_2878 -2.9 -8.5 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_1626 -2.9 -7.3 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_2549 -2.9 -8.7 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_5665 -2.8 -4.1 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_2338 -2.8 -7.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_742 -2.8 -6.5 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_1617 -2.7 -8.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_5224 -2.7 -3.9 tRNA-Arg-CCT compare
Pf1N1B4_1153 -2.7 -4.9 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf1N1B4_1307 -2.7 -3.1 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_5666 -2.7 -3.5 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_1315 -2.7 -8.7 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_12 -2.6 -5.4 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_2272 -2.6 -3.5 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_2879 -2.6 -5.7 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_2858 -2.6 -9.5 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_1625 -2.5 -5.9 FIG00956267: hypothetical protein compare
Pf1N1B4_847 -2.5 -8.0 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_2547 -2.5 -4.1 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_683 -2.5 -4.7 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_1 -2.4 -2.7 Colicin V production protein compare
Pf1N1B4_1434 -2.4 -7.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_350 -2.4 -6.6 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_3506 -2.4 -6.3 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_2487 -2.4 -8.0 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_1906 -2.3 -4.0 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_2377 -2.3 -6.3 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_2380 -2.3 -13.4 Cytochrome B561 compare
Pf1N1B4_2488 -2.2 -7.8 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf1N1B4_1627 -2.2 -4.6 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_762 -2.2 -6.1 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_5925 -2.2 -9.8 hypothetical protein compare
Pf1N1B4_3917 -2.1 -4.0 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf1N1B4_2337 -2.1 -5.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_1545 -2.1 -9.1 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf1N1B4_4065 -2.1 -6.7 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_2490 -2.1 -6.0 Biotin synthesis protein BioC compare
Pf1N1B4_2491 -2.1 -4.3 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf1N1B4_5991 -2.0 -2.5 Transcriptional regulator, AraC family compare
Pf1N1B4_2381 -2.0 -10.9 Protein yceI precursor compare
Pf1N1B4_3812 -2.0 -7.9 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_2939 -1.9 -5.8 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf1N1B4_2489 -1.9 -6.2 Biotin synthesis protein BioH compare
Pf1N1B4_2280 -1.9 -8.0 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_5926 -1.9 -10.0 hypothetical protein compare
Pf1N1B4_3906 -1.8 -4.3 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_578 -1.8 -3.4 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_4436 -1.8 -3.1 Glutaminase (EC 3.5.1.2) compare
Pf1N1B4_1329 -1.8 -6.3 Cobalamin biosynthesis protein CobG compare
Pf1N1B4_2401 -1.7 -3.2 Lipoprotein, putative compare
Pf1N1B4_1566 -1.7 -6.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_27 -1.6 -4.0 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf1N1B4_2005 -1.6 -2.2 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_2486 -1.6 -2.1 hypothetical protein compare
Pf1N1B4_1317 -1.6 -3.1 Sensor histidine kinase/response regulator compare
Pf1N1B4_3152 -1.5 -5.2 LysR family transcriptional regulator PA3398 compare
Pf1N1B4_2283 -1.5 -2.2 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_3328 -1.5 -2.0 Rhodanese-like domain protein compare
Pf1N1B4_3833 -1.5 -6.0 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_4818 -1.5 -1.9 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_1683 -1.4 -2.7 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf1N1B4_733 -1.4 -2.2 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Pf1N1B4_626 -1.4 -6.1 Quinolinate synthetase (EC 2.5.1.72) compare
Pf1N1B4_2853 -1.4 -1.9 Pantoate--beta-alanine ligase (EC 6.3.2.1) compare
Pf1N1B4_2850 -1.4 -5.8 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_5904 -1.4 -2.1 FIG00955320: hypothetical protein compare
Pf1N1B4_4667 -1.3 -2.7 Acriflavin resistance plasma membrane protein compare
Pf1N1B4_1328 -1.3 -2.8 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf1N1B4_4028 -1.3 -2.9 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_5906 -1.3 -2.9 Esterase/lipase compare
Pf1N1B4_2225 -1.3 -8.2 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf1N1B4_3518 -1.3 -2.0 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_2010 -1.3 -4.9 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_507 -1.3 -1.7 FIG00956448: hypothetical protein compare
Pf1N1B4_2348 -1.3 -5.3 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR compare
Pf1N1B4_1057 -1.2 -2.3 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_448 -1.2 -1.7 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf1N1B4_7 -1.2 -3.6 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf1N1B4_2400 -1.2 -2.5 FIG00955006: hypothetical protein compare
Pf1N1B4_2874 -1.2 -2.3 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_2912 -1.2 -1.7 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_909 -1.2 -2.6 Ketosteroid isomerase-related protein compare
Pf1N1B4_4833 -1.1 -2.6 DNA-binding response regulator, LuxR family compare
Pf1N1B4_5699 -1.1 -1.4 ABC-type uncharacterized transport system, ATPase component compare
Pf1N1B4_6045 -1.1 -2.1 CigR (Putative inner membrane protein) compare
Pf1N1B4_1403 -1.1 -4.8 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_4107 -1.1 -2.1 Probable glutathione S-transferase (EC 2.5.1.18), YfcF homolog compare
Pf1N1B4_3707 -1.1 -5.1 Cobyrinic acid A,C-diamide synthase compare
Pf1N1B4_2105 -1.1 -1.9 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_3279 -1.1 -2.7 putative membrane protein compare
Pf1N1B4_4235 -1.1 -2.2 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf1N1B4_4846 -1.1 -3.9 Multiple polyol-specific dehydrogenase (EC 1.1.1.-) compare
Pf1N1B4_1052 -1.1 -2.3 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf1N1B4_5838 -1.1 -1.9 FIG00956589: hypothetical protein compare
Pf1N1B4_1568 -1.1 -3.1 Twin-arginine translocation protein TatB compare
Pf1N1B4_2047 -1.1 -3.4 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
Pf1N1B4_2891 -1.1 -3.1 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf1N1B4_479 -1.1 -2.2 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Pf1N1B4_1065 -1.1 -4.5 Histidinol-phosphate aminotransferase (EC 2.6.1.9) compare
Pf1N1B4_5652 -1.1 -2.3 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf1N1B4_3685 -1.1 -3.1 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) compare
Pf1N1B4_4481 -1.0 -2.0 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf1N1B4_652 -1.0 -6.1 Sensory box histidine kinase compare
Pf1N1B4_2026 -1.0 -2.3 Transcriptional regulator compare
Pf1N1B4_2893 -1.0 -4.8 Carbonic anhydrase (EC 4.2.1.1) compare
Pf1N1B4_2859 -1.0 -7.3 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_4172 -1.0 -1.9 hypothetical protein compare
Pf1N1B4_4835 -1.0 -1.6 Carbon starvation protein A compare
Pf1N1B4_3711 -1.0 -4.1 Cobyric acid synthase (EC 6.3.5.10) compare
Pf1N1B4_403 -1.0 -1.5 FIG00965925: hypothetical protein compare
Pf1N1B4_5927 -1.0 -8.3 Capsular polysaccharide biosynthesis protein compare
Pf1N1B4_5002 -1.0 -3.2 Protein rarD compare
Pf1N1B4_2791 -1.0 -1.5 Putative inner membrane protein (Fragment) compare
Pf1N1B4_3153 -1.0 -1.5 hypothetical protein compare
Pf1N1B4_1327 -1.0 -5.6 Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) compare
Pf1N1B4_5425 -1.0 -1.9 DNA-binding protein HU-beta compare
Pf1N1B4_348 -1.0 -2.8 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf1N1B4_2284 -1.0 -3.4 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf1N1B4_1462 -1.0 -7.4 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
Pf1N1B4_32 -1.0 -2.2 Transcriptional regulator, TetR family compare
Pf1N1B4_855 -1.0 -2.2 FIG021952: putative membrane protein compare
Pf1N1B4_5724 -1.0 -1.9 High-affinity iron permease compare
Pf1N1B4_3552 -1.0 -2.7 Hypothetical YciO protein, TsaC/YrdC paralog compare
Pf1N1B4_3911 -1.0 -2.4 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf1N1B4_2208 -1.0 -4.7 Polyphosphate kinase (EC 2.7.4.1) compare
Pf1N1B4_4979 -0.9 -2.0 Transcriptional regulator, AsnC family compare
Pf1N1B4_339 -0.9 -1.7 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf1N1B4_4041 -0.9 -2.1 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_718 -0.9 -4.0 outer membrane component of uptake system, probably for ferrous iron (from data) compare
Pf1N1B4_3538 -0.9 -1.4 Transcriptional regulator, AraC family compare
Pf1N1B4_1570 -0.9 -2.8 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
Pf1N1B4_2296 -0.9 -2.6 FIG00350678: hypothetical protein compare
Pf1N1B4_5786 -0.9 -2.2 putative membrane protein compare
Pf1N1B4_1331 -0.9 -2.4 Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) compare
Pf1N1B4_1113 -0.9 -3.6 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_4585 -0.9 -1.3 Putative Isoquinoline 1-oxidoreductase subunit, Mll3835 protein compare
Pf1N1B4_76 -0.9 -2.0 ATP binding protein compare
Pf1N1B4_5331 -0.9 -1.8 hypothetical protein compare
Pf1N1B4_835 -0.9 -2.0 Trehalose-6-phosphate hydrolase (EC 3.2.1.93) compare
Pf1N1B4_322 -0.9 -1.9 nucleotide sugar epimerase/dehydratase WbpM compare
Pf1N1B4_175 -0.9 -1.8 sigma-54 dependent transcriptional regulator compare
Pf1N1B4_2485 -0.9 -1.5 Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy compare
Pf1N1B4_3006 -0.9 -3.5 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf1N1B4_224 -0.9 -1.7 Isohexenylglutaconyl-CoA hydratase compare
Pf1N1B4_5110 -0.9 -2.8 hypothetical protein compare
Pf1N1B4_3368 -0.9 -1.5 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf1N1B4_4038 -0.9 -1.7 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_5661 -0.9 -3.9 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) compare
Pf1N1B4_430 -0.9 -1.4 hypothetical protein compare
Pf1N1B4_3826 -0.9 -4.3 Phosphoenolpyruvate synthase (EC 2.7.9.2) compare
Pf1N1B4_5371 -0.9 -1.6 hypothetical protein compare
Pf1N1B4_139 -0.9 -1.8 Pyoverdin biosynthesis protein PvdN, putative aminotransferase, class V compare
Pf1N1B4_5720 -0.9 -1.4 hypothetical protein compare
Pf1N1B4_3241 -0.9 -1.2 hypothetical protein compare
Pf1N1B4_5624 -0.9 -1.9 Lipase precursor (EC 3.1.1.3) compare
Pf1N1B4_1619 -0.9 -5.2 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_1554 -0.9 -3.9 predicted FeS cluster maintenance protein (from data) compare
Pf1N1B4_2353 -0.8 -2.5 twitching motility protein PilG compare
Pf1N1B4_4458 -0.8 -2.0 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf1N1B4_731 -0.8 -1.7 Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like compare
Pf1N1B4_49 -0.8 -2.0 hypothetical protein compare
Pf1N1B4_2969 -0.8 -5.8 ATPase, AFG1 family compare
Pf1N1B4_5768 -0.8 -1.7 Heme d1 biosynthesis protein NirD compare
Pf1N1B4_5745 -0.8 -1.8 FIG139928: Putative protease compare
Pf1N1B4_4102 -0.8 -2.1 Mannose-6-phosphate isomerase (EC 5.3.1.8) compare
Pf1N1B4_4972 -0.8 -1.5 CELL PROCESSES; Adaptation; adaptations, atypical conditions compare
Pf1N1B4_2612 -0.8 -2.4 Putative transport protein compare
Pf1N1B4_2009 -0.8 -3.0 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_379 -0.8 -2.2 Protein of unknown function UPF0060 compare
Pf1N1B4_1636 -0.8 -1.2 FIG00954739: hypothetical protein compare
Pf1N1B4_2060 -0.8 -2.4 hypothetical protein compare
Pf1N1B4_2037 -0.8 -2.3 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf1N1B4_1311 -0.8 -2.8 Probable transmembrane protein compare
Pf1N1B4_4039 -0.8 -3.3 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_3098 -0.8 -2.1 Ribonuclease HII (EC 3.1.26.4) compare
Pf1N1B4_4441 -0.8 -2.5 Cyanate hydratase (EC 4.2.1.104) compare
Pf1N1B4_2688 -0.8 -2.5 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf1N1B4_5311 -0.8 -1.6 hypothetical protein compare
Pf1N1B4_3636 -0.8 -1.5 FIG00953562: hypothetical protein compare
Pf1N1B4_1402 -0.8 -2.1 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) compare
Pf1N1B4_4446 -0.8 -1.4 DNA topoisomerase III (EC 5.99.1.2) compare
Pf1N1B4_4918 -0.8 -1.4 Predicted enzyme of the cupin superfamily compare
Pf1N1B4_3715 -0.8 -2.4 Cobalamin synthase compare
Pf1N1B4_1326 -0.8 -3.2 Cobalamin biosynthesis protein CbiG / Cobalt-precorrin-3b C17-methyltransferase compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N1B4 in carbon source experiments

For carbon source L-Glutamine across organisms