Experiment set4IT071 for Vibrio cholerae E7946 ATCC 55056

Compare to:

NoPhageControl

200 most important genes:

  gene name fitness t score description  
CSW01_06380 -4.8 -3.3 GTP cyclohydrolase II compare
CSW01_11560 -4.7 -7.2 riboflavin biosynthesis protein RibD compare
CSW01_11555 -4.4 -7.4 riboflavin synthase compare
CSW01_09525 -3.9 -3.7 DNA translocase FtsK compare
CSW01_12320 -3.8 -7.2 3',5'-cyclic-AMP phosphodiesterase compare
CSW01_18350 -3.4 -4.1 cell division protein DedD compare
CSW01_00560 -3.2 -11.0 DNA polymerase I compare
CSW01_12005 -3.0 -9.3 aerobic respiration two-component sensor histidine kinase ArcB compare
CSW01_11780 -2.8 -6.8 exodeoxyribonuclease V subunit beta compare
CSW01_05575 -2.7 -7.7 phosphate acetyltransferase compare
CSW01_03410 -2.4 -4.9 polyribonucleotide nucleotidyltransferase compare
CSW01_13805 -2.4 -8.0 Hsp33 family molecular chaperone HslO compare
CSW01_13285 -2.4 -6.3 ribulose-phosphate 3-epimerase compare
CSW01_11785 -2.2 -5.2 exonuclease V subunit gamma compare
CSW01_11730 -2.2 -5.3 2-dehydropantoate 2-reductase compare
CSW01_13305 -2.0 -4.3 shikimate kinase compare
CSW01_00650 -2.0 -11.7 tyrosine recombinase XerC compare
CSW01_01195 -2.0 -5.7 ADP-heptose--LPS heptosyltransferase I compare
CSW01_01965 -2.0 -4.8 glucose-6-phosphate isomerase compare
CSW01_13420 -1.9 -4.1 elongation factor P--(R)-beta-lysine ligase compare
CSW01_09720 -1.8 -3.4 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
CSW01_08240 -1.8 -6.6 ATP-binding protein compare
CSW01_08450 -1.7 -2.9 antimicrobial peptide ABC transporter permease SapB compare
CSW01_12250 -1.7 -9.0 site-specific tyrosine recombinase XerD compare
CSW01_03325 -1.6 -4.2 porin compare
CSW01_02875 -1.6 -6.8 DNA recombination/repair protein RecA compare
CSW01_01515 -1.5 -5.0 type II 3-dehydroquinate dehydratase compare
CSW01_14055 -1.5 -6.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
CSW01_12340 -1.4 -4.4 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase compare
CSW01_11535 -1.4 -7.0 thiamine-phosphate kinase compare
CSW01_13445 -1.4 -3.0 elongation factor P compare
CSW01_10875 -1.4 -7.0 redox-regulated ATPase YchF compare
CSW01_02490 -1.3 -7.5 glutathione synthetase compare
CSW01_03985 -1.3 -6.2 GMP synthase (glutamine-hydrolyzing) compare
CSW01_03785 -1.3 -4.6 phosphate ABC transporter permease compare
CSW01_03790 -1.2 -3.9 phosphate ABC transporter, permease protein PstA compare
CSW01_09250 -1.2 -2.1 crossover junction endodeoxyribonuclease RuvC compare
CSW01_12465 -1.2 -5.7 elongation factor 4 compare
CSW01_11670 -1.2 -2.8 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
CSW01_12255 -1.1 -4.1 flavodoxin FldB compare
CSW01_09240 -1.1 -4.4 Holliday junction branch migration DNA helicase RuvB compare
CSW01_01015 -1.1 -8.8 DNA helicase II compare
CSW01_12815 -1.1 -7.3 RNA polymerase sigma-54 factor compare
CSW01_03870 -1.1 -1.9 inositol monophosphatase compare
CSW01_08620 -1.0 -8.3 chromosome partition protein MukB compare
CSW01_05165 -1.0 -1.6 electron transport complex subunit RsxC compare
CSW01_02970 -1.0 -5.9 glutamate--cysteine ligase compare
CSW01_01820 -1.0 -3.9 N-acetylmuramoyl-L-alanine amidase compare
CSW01_04375 -1.0 -3.3 SsrA-binding protein compare
CSW01_00450 -1.0 -1.9 SCP2 domain-containing protein compare
CSW01_08630 -1.0 -5.6 condensin subunit F compare
CSW01_12365 -1.0 -4.4 inorganic phosphate transporter compare
CSW01_00015 -1.0 -3.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
CSW01_05580 -1.0 -4.7 acetate kinase compare
CSW01_03475 -1.0 -4.6 ATP-dependent RNA helicase SrmB compare
CSW01_10190 -0.9 -5.3 nucleoid-associated protein compare
CSW01_01245 -0.9 -4.3 lipopolysaccharide heptosyltransferase II compare
CSW01_12130 -0.9 -2.1 DUF721 domain-containing protein compare
CSW01_09245 -0.9 -4.8 Holliday junction branch migration protein RuvA compare
CSW01_13450 -0.9 -3.6 EF-P beta-lysylation protein EpmB compare
CSW01_04940 -0.9 -1.5 hypothetical protein compare
CSW01_03795 -0.8 -2.0 phosphate ABC transporter ATP-binding protein compare
CSW01_03695 -0.8 -4.4 ribosomal large subunit pseudouridine synthase D compare
CSW01_05195 -0.8 -4.6 sigma-54-dependent Fis family transcriptional regulator compare
CSW01_08625 -0.8 -3.8 chromosome partition protein MukE compare
CSW01_05925 -0.8 -4.0 tryptophan synthase subunit alpha compare
CSW01_08465 -0.8 -2.5 ABC transporter ATP-binding protein compare
CSW01_03205 -0.8 -5.8 iron ABC transporter substrate-binding protein compare
CSW01_05265 -0.8 -1.6 methionine--tRNA ligase compare
CSW01_01265 -0.8 -3.3 ADP-L-glycero-D-mannoheptose-6-epimerase compare
CSW01_04650 -0.8 -1.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
CSW01_00660 -0.8 -6.7 sensor domain-containing phosphodiesterase compare
CSW01_18635 -0.7 -4.0 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) compare
CSW01_00615 -0.7 -2.2 hypothetical protein compare
CSW01_13395 -0.7 -5.0 PadR family transcriptional regulator compare
CSW01_05125 -0.7 -2.0 ribonuclease T compare
CSW01_01830 -0.7 -2.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
CSW01_10260 -0.7 -2.2 thiol:disulfide interchange protein DsbE compare
CSW01_01485 -0.7 -3.5 transcriptional regulator compare
CSW01_00940 -0.7 -1.6 hypothetical protein compare
CSW01_07500 -0.7 -1.2 DUF2835 domain-containing protein compare
CSW01_02450 -0.7 -4.7 pyrroline-5-carboxylate reductase compare
CSW01_11410 -0.7 -1.7 nitrogen regulatory protein P-II compare
CSW01_13675 -0.7 -3.6 bifunctional GTP diphosphokinase/guanosine-3',5'-bis(diphosphate) 3'-diphosphatase compare
CSW01_04900 -0.7 -3.3 magnesium and cobalt efflux protein CorC compare
CSW01_10710 -0.7 -4.3 deferrochelatase compare
CSW01_00470 -0.7 -3.1 twin-arginine translocase subunit TatC compare
CSW01_00065 -0.6 -4.0 DNA replication and repair protein RecF compare
CSW01_11520 -0.6 -3.4 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
CSW01_05985 -0.6 -3.3 thioredoxin-disulfide reductase compare
CSW01_14680 -0.6 -0.9 aminotransferase compare
CSW01_03210 -0.6 -5.0 iron ABC transporter permease compare
CSW01_09920 -0.6 -1.8 chromosome partitioning protein ParA compare
CSW01_10265 -0.6 -3.6 c-type cytochrome biogenesis protein CcmF compare
CSW01_07060 -0.6 -1.6 TetR/AcrR family transcriptional regulator compare
CSW01_07520 -0.6 -2.6 RNA chaperone ProQ compare
CSW01_14875 -0.6 -0.7 chromosome partitioning protein ParA compare
CSW01_18185 -0.6 -3.1 DEAD/DEAH box family ATP-dependent RNA helicase compare
CSW01_00620 -0.6 -4.1 class I adenylate cyclase compare
CSW01_05935 -0.6 -2.6 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
CSW01_05370 -0.6 -1.7 YbaB/EbfC family nucleoid-associated protein compare
CSW01_03330 -0.6 -2.7 transcription elongation factor GreA compare
CSW01_19210 -0.6 -1.8 DUF3081 domain-containing protein compare
CSW01_10330 -0.6 -3.1 chemotaxis protein CheY compare
CSW01_17905 -0.6 -2.4 aquaporin family protein compare
CSW01_08515 -0.6 -1.9 trimethylamine N-oxide reductase system protein TorE compare
CSW01_11255 -0.6 -3.2 flagellar biosynthesis protein FlgP compare
CSW01_01125 -0.6 -4.5 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
CSW01_06810 -0.6 -1.0 hypothetical protein compare
CSW01_09620 -0.6 -2.2 trigger factor compare
CSW01_07150 -0.6 -1.8 spermidine/putrescine ABC transporter permease PotC compare
CSW01_14280 -0.6 -1.8 DUF3302 domain-containing protein compare
CSW01_16310 -0.6 -0.6 DUF3709 domain-containing protein compare
CSW01_14085 -0.5 -1.5 transcriptional regulator compare
CSW01_10750 -0.5 -3.0 outer membrane protein assembly factor BamC compare
CSW01_06585 -0.5 -1.3 fumarate hydratase compare
CSW01_14125 -0.5 -3.2 1,4-alpha-glucan branching enzyme compare
CSW01_00095 -0.5 -1.0 hypothetical protein compare
CSW01_13515 -0.5 -2.5 HslU--HslV peptidase proteolytic subunit compare
CSW01_02085 -0.5 -3.5 UTP--glucose-1-phosphate uridylyltransferase compare
CSW01_10170 -0.5 -1.6 MarC family protein compare
CSW01_14235 -0.5 -2.1 copper chaperone PCu(A)C compare
CSW01_05090 -0.5 -2.8 tRNA pseudouridine(38-40) synthase TruA compare
CSW01_09215 -0.5 -0.8 tol-pal system-associated acyl-CoA thioesterase compare
CSW01_03215 -0.5 -4.3 ABC transporter ATP-binding protein compare
CSW01_11920 -0.5 -3.8 NupC/NupG family nucleoside CNT transporter compare
CSW01_04935 -0.5 -0.7 phosphocarrier protein HPr compare
CSW01_06870 -0.5 -3.2 7-carboxy-7-deazaguanine synthase QueE compare
CSW01_05825 -0.5 -2.6 transcriptional regulator HexR compare
CSW01_14625 -0.5 -1.2 hypothetical protein compare
CSW01_17060 -0.5 -2.2 DUF2861 domain-containing protein compare
CSW01_04390 -0.5 -1.2 outer membrane protein assembly factor BamE compare
CSW01_17780 -0.5 -1.6 hypothetical protein compare
CSW01_10255 -0.5 -1.2 cytochrome c-type biogenesis protein CcmH compare
CSW01_10745 -0.5 -1.1 DUF2897 domain-containing protein compare
CSW01_01185 -0.5 -3.1 ADP-heptose--LPS heptosyltransferase compare
CSW01_03980 -0.5 -3.3 IMP dehydrogenase compare
CSW01_00570 -0.5 -2.4 cytochrome c4 compare
CSW01_12240 -0.5 -4.2 single-stranded-DNA-specific exonuclease RecJ compare
CSW01_08730 -0.5 -1.3 phage-shock protein compare
CSW01_08445 -0.5 -2.2 ABC transporter substrate-binding protein compare
CSW01_02755 -0.5 -1.6 glutamyl-tRNA amidotransferase compare
CSW01_02315 -0.5 -3.2 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
CSW01_16070 -0.5 -2.3 isomerase compare
CSW01_05930 -0.5 -3.8 tryptophan synthase subunit beta compare
CSW01_10285 -0.5 -1.5 heme exporter protein CcmB compare
CSW01_17265 -0.5 -2.0 hypothetical protein compare
CSW01_07195 -0.5 -1.5 cytochrome biogenesis protein compare
CSW01_02580 -0.5 -2.9 DeoR/GlpR transcriptional regulator compare
CSW01_03850 -0.5 -3.0 tRNA guanosine(34) transglycosylase Tgt compare
CSW01_03770 -0.4 -3.3 phosphate ABC transporter substrate-binding protein compare
CSW01_05280 -0.4 -2.7 uridine kinase compare
CSW01_04150 -0.4 -2.7 RNA methyltransferase compare
CSW01_03155 -0.4 -2.9 RNA polymerase-binding transcription factor DksA compare
CSW01_11420 -0.4 -1.5 cytochrome C biogenesis protein CcsB compare
CSW01_12665 -0.4 -1.8 RDD family protein compare
CSW01_09340 -0.4 -1.5 hypothetical protein compare
CSW01_10560 -0.4 -2.0 chorismate synthase compare
CSW01_10410 -0.4 -2.6 zinc ABC transporter permease compare
CSW01_11000 -0.4 -2.2 hypothetical protein compare
CSW01_10550 -0.4 -3.1 elongation factor P hydroxylase compare
CSW01_15380 -0.4 -2.1 hypothetical protein compare
CSW01_09145 -0.4 -2.3 PTS fructose transporter subunit IIA compare
CSW01_05490 -0.4 -2.4 L-threonylcarbamoyladenylate synthase compare
CSW01_13635 -0.4 -3.5 thiol:disulfide interchange protein DsbD compare
CSW01_12680 -0.4 -3.0 cytosol aminopeptidase compare
CSW01_05440 -0.4 -1.1 transcriptional regulator compare
CSW01_01490 -0.4 -1.2 Fis family transcriptional regulator compare
CSW01_04910 -0.4 -0.9 PhoH family protein compare
CSW01_05950 -0.4 -3.2 anthranilate synthase component I compare
CSW01_05915 -0.4 -2.6 thymidine kinase compare
CSW01_17745 -0.4 -1.5 diacylglycerol kinase compare
CSW01_12225 -0.4 -1.7 pyruvate dehydrogenase complex transcriptional repressor PdhR compare
CSW01_01980 -0.4 -3.3 transcriptional regulator Zur compare
CSW01_01190 -0.4 -2.7 glycosyltransferase family 2 protein compare
CSW01_10145 -0.4 -1.8 ribonuclease E compare
CSW01_13865 -0.4 -3.1 nitrogen regulation protein NR(I) compare
CSW01_09955 -0.4 -2.3 L-asparaginase 1 compare
CSW01_10415 -0.4 -2.5 succinate--CoA ligase subunit alpha compare
CSW01_04525 -0.4 -1.8 DUF188 domain-containing protein compare
CSW01_09605 -0.4 -2.1 endopeptidase La compare
CSW01_02230 -0.4 -1.8 ribonuclease E inhibitor RraB compare
CSW01_08320 -0.4 -2.4 EamA/RhaT family transporter compare
CSW01_03025 -0.4 -2.3 hypothetical protein compare
CSW01_03745 -0.4 -1.5 ferredoxin compare
CSW01_00280 -0.4 -3.0 shikimate dehydrogenase compare
CSW01_18685 -0.4 -0.6 heme utilization cystosolic carrier protein HutX compare
CSW01_10400 -0.4 -1.6 zinc ABC transporter substrate-binding protein compare
CSW01_17830 -0.4 -0.8 hypothetical protein compare
CSW01_00415 -0.4 -1.3 hypothetical protein compare
CSW01_08660 -0.4 -2.4 PurR family transcriptional regulator compare
CSW01_06390 -0.4 -2.0 thiol oxidoreductase compare
CSW01_18590 -0.4 -1.7 LysR family transcriptional regulator compare
CSW01_18155 -0.4 -2.3 HAD family hydrolase compare
CSW01_04585 -0.4 -2.4 tRNA 4-thiouridine(8) synthase ThiI compare
CSW01_07580 -0.4 -1.0 hypothetical protein compare
CSW01_11120 -0.4 -1.3 hypothetical protein compare
CSW01_00235 -0.4 -2.1 peptide deformylase compare
CSW01_03845 -0.4 -0.9 hypothetical protein compare
CSW01_02205 -0.4 -2.8 ribonuclease E/G compare


Specific Phenotypes

None in this experiment

For Vibrio cholerae E7946 ATCC 55056 in phage experiments

For phage nophage across organisms