Experiment set4IT070 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Cholin acetate 38 mM

200 most important genes:

  gene name fitness t score description  
AO353_22685 -3.8 -2.6 peroxidase compare
AO353_04830 -3.7 -5.6 required for acetate efflux, together with NodT, MFP and FUSC proteins (AO353_04840, AO353_04825, and AO353_04835) (from data) compare
AO353_12500 -3.1 -2.1 shikimate kinase compare
AO353_21625 -2.9 -2.7 Fe/S biogenesis protein NfuA compare
AO353_12115 -2.8 -3.2 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_18540 -2.7 -3.1 pseudouridine synthase compare
AO353_00430 -2.6 -4.5 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_04835 -2.6 -11.1 fusaric acid resistance protein compare
AO353_04840 -2.6 -10.4 RND transporter compare
AO353_06335 -2.5 -16.3 AMP nucleosidase compare
AO353_11730 -2.5 -8.6 glutamate--cysteine ligase compare
AO353_20565 -2.4 -2.1 tRNA-Ala compare
AO353_04825 -2.3 -6.7 hypothetical protein compare
AO353_11750 -2.3 -2.7 ATPase compare
AO353_03795 -2.2 -4.3 fumarate hydratase compare
AO353_27155 -2.2 -3.4 hypothetical protein compare
AO353_02250 -2.1 -2.5 chorismate synthase compare
AO353_06040 -2.1 -4.3 exodeoxyribonuclease V subunit alpha compare
AO353_16940 -2.1 -6.0 deoxycytidine triphosphate deaminase compare
AO353_08110 -2.1 -5.5 glutathione synthetase compare
AO353_15455 -2.0 -12.2 cytochrome o ubiquinol oxidase subunit I compare
AO353_07315 -2.0 -3.6 rRNA methyltransferase compare
AO353_11850 -2.0 -5.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_13100 -2.0 -2.1 GTPase RsgA compare
AO353_04845 -1.9 -10.3 LysR family transcriptional regulator conserved
AO353_15465 -1.9 -6.0 cytochrome C oxidase compare
AO353_09240 -1.9 -3.0 acetylglutamate kinase compare
AO353_09250 -1.8 -3.2 exodeoxyribonuclease III compare
AO353_00825 -1.8 -4.0 porin compare
AO353_01410 -1.8 -3.6 ribonuclease E compare
AO353_06415 -1.8 -4.3 hypothetical protein compare
AO353_06045 -1.8 -6.9 exodeoxyribonuclease V subunit beta compare
AO353_18780 -1.8 -6.6 cobyrinic acid a,c-diamide synthase compare
AO353_04565 -1.8 -5.4 nucleoid-associated protein compare
AO353_06495 -1.8 -4.9 gamma-glutamyl phosphate reductase compare
AO353_04520 -1.8 -5.7 elongation factor 4 compare
AO353_09000 -1.8 -5.2 argininosuccinate lyase compare
AO353_03585 -1.7 -2.9 ATP-dependent DNA helicase RuvA compare
AO353_07075 -1.7 -5.2 elongation factor Tu compare
AO353_14940 -1.7 -3.7 malate:quinone oxidoreductase compare
AO353_15460 -1.7 -6.6 cytochrome o ubiquinol oxidase subunit III compare
AO353_14370 -1.7 -5.7 glucose-6-phosphate isomerase compare
AO353_06850 -1.7 -4.4 MFS transporter compare
AO353_05690 -1.7 -3.6 SsrA-binding protein compare
AO353_27720 -1.6 -4.2 cupin compare
AO353_18425 -1.6 -4.5 hypothetical protein compare
AO353_10945 -1.6 -3.1 cytochrome C compare
AO353_13160 -1.6 -2.5 membrane protease HflC compare
AO353_03615 -1.6 -2.7 cold-shock protein compare
AO353_27695 -1.6 -6.1 isocitrate dehydrogenase compare
AO353_14740 -1.6 -3.5 GTP-binding protein compare
AO353_20185 -1.6 -5.5 DNA-binding protein compare
AO353_15260 -1.6 -5.5 stringent starvation protein A compare
AO353_15905 -1.6 -5.8 outer membrane protein assembly factor BamB compare
AO353_02005 -1.6 -2.0 hypothetical protein compare
AO353_04035 -1.6 -4.1 exclusion suppressor FxsA compare
AO353_17675 -1.5 -5.1 hypothetical protein compare
AO353_04190 -1.5 -2.1 glycerol-3-phosphate dehydrogenase compare
AO353_03580 -1.5 -3.2 ATP-dependent DNA helicase RuvB compare
AO353_08115 -1.5 -5.6 energy transducer TonB compare
AO353_08165 -1.5 -3.0 pyrroline-5-carboxylate reductase compare
AO353_01975 -1.5 -6.4 glycosyl transferase compare
AO353_06455 -1.5 -2.5 D-alanyl-D-alanine carboxypeptidase compare
AO353_15470 -1.5 -9.1 protoheme IX farnesyltransferase compare
AO353_06050 -1.4 -5.5 exodeoxyribonuclease V subunit gamma compare
AO353_07155 -1.4 -5.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_09890 -1.4 -4.2 phosphate ABC transporter ATP-binding protein compare
AO353_05150 -1.4 -4.1 ABC transporter ATP-binding protein compare
AO353_10670 -1.4 -6.1 shikimate dehydrogenase compare
AO353_06720 -1.4 -2.1 NrdR family transcriptional regulator compare
AO353_03590 -1.4 -2.8 crossover junction endodeoxyribonuclease RuvC compare
AO353_14590 -1.4 -1.2 serine kinase/phosphatase compare
AO353_20200 -1.3 -3.4 peptidylprolyl isomerase compare
AO353_12105 -1.3 -5.5 peptidase S41 compare
AO353_14775 -1.3 -5.0 hypothetical protein compare
AO353_19020 -1.3 -2.5 hypothetical protein compare
AO353_11775 -1.3 -6.1 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_09315 -1.3 -7.5 LysR family transcriptional regulator compare
AO353_27000 -1.3 -2.0 hypothetical protein compare
AO353_13155 -1.3 -3.3 hypothetical protein compare
AO353_05125 -1.3 -4.2 BolA family transcriptional regulator compare
AO353_20865 -1.3 -2.2 cold-shock protein compare
AO353_02000 -1.3 -2.7 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_15250 -1.2 -3.0 cytochrome B compare
AO353_02070 -1.2 -5.2 prephenate dehydratase compare
AO353_08685 -1.2 -5.9 N-acetylglutamate synthase compare
AO353_10510 -1.2 -1.6 benzoate transporter compare
AO353_20170 -1.2 -3.9 trigger factor compare
AO353_09440 -1.2 -2.2 type VI secretion protein compare
AO353_15385 -1.2 -2.0 hypothetical protein compare
AO353_28425 -1.2 -2.9 TetR family transcriptional regulator compare
AO353_12880 -1.2 -1.7 ADP-heptose--LPS heptosyltransferase compare
AO353_07355 -1.2 -4.5 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_15555 -1.2 -3.6 fumarylacetoacetase compare
AO353_13225 -1.2 -2.7 50S ribosomal protein L9 compare
AO353_23835 -1.2 -2.4 hypothetical protein compare
AO353_11190 -1.2 -7.9 ABC transporter compare
AO353_05550 -1.2 -5.1 pseudouridine synthase compare
AO353_05240 -1.2 -2.8 rod shape-determining protein MreD compare
AO353_13685 -1.2 -3.8 3-dehydroquinate dehydratase compare
AO353_20175 -1.2 -2.5 ATP-dependent Clp protease proteolytic subunit compare
AO353_26220 -1.2 -2.3 hypothetical protein compare
AO353_04930 -1.2 -2.6 flavodoxin compare
AO353_02235 -1.1 -4.2 acireductone dioxygenase compare
AO353_15725 -1.1 -3.5 hypothetical protein compare
AO353_08130 -1.1 -2.2 uracil phosphoribosyltransferase compare
AO353_03300 -1.1 -2.5 hypothetical protein compare
AO353_18700 -1.1 -2.0 flagellar biogenesis protein compare
AO353_27725 -1.1 -2.4 GNAT family acetyltransferase compare
AO353_10930 -1.1 -5.7 DNA polymerase I compare
AO353_27500 -1.1 -1.9 hypothetical protein compare
AO353_09275 -1.1 -2.2 DNA-directed RNA polymerase subunit omega compare
AO353_12345 -1.1 -1.7 twin-arginine protein translocation system subunit TatC compare
AO353_15450 -1.1 -6.8 ubiquinol oxidase subunit II compare
AO353_11185 -1.1 -7.7 channel protein TolC compare
AO353_17940 -1.1 -2.8 hypothetical protein compare
AO353_12090 -1.1 -1.7 imidazole glycerol phosphate synthase subunit HisF compare
AO353_10455 -1.1 -1.2 tRNA modification GTPase MnmE compare
AO353_06490 -1.1 -2.9 nicotinate-nucleotide adenylyltransferase compare
AO353_15595 -1.1 -2.4 hypothetical protein compare
AO353_16805 -1.1 -4.0 recombinase RecA compare
AO353_10065 -1.1 -5.7 hypothetical protein compare
AO353_22800 -1.1 -2.1 sulfite reductase compare
AO353_19090 -1.1 -1.6 MarR family transcriptional regulator compare
AO353_05145 -1.1 -4.1 ABC transporter permease compare
AO353_08980 -1.1 -2.7 heme biosynthesis operon protein HemX compare
AO353_29215 -1.0 -1.8 alpha/beta hydrolase compare
AO353_14115 -1.0 -4.7 gamma-glutamyl kinase compare
AO353_00090 -1.0 -2.6 hypothetical protein compare
AO353_12420 -1.0 -2.6 predicted FeS cluster maintenance protein (from data) compare
AO353_06365 -1.0 -7.0 hypothetical protein compare
AO353_02100 -1.0 -2.6 phosphoglycolate phosphatase compare
AO353_23170 -1.0 -2.8 short-chain dehydrogenase compare
AO353_00185 -1.0 -2.0 phage tail protein compare
AO353_22845 -1.0 -2.4 GNAT family acetyltransferase compare
AO353_19605 -1.0 -1.8 hypothetical protein compare
AO353_17850 -1.0 -1.8 SAM-dependent methyltransferase compare
AO353_11195 -1.0 -7.7 hemolysin secretion protein D compare
AO353_12625 -1.0 -3.1 hypothetical protein compare
AO353_19360 -1.0 -1.7 peroxiredoxin compare
AO353_05625 -1.0 -1.6 transcription elongation factor GreA compare
AO353_04355 -1.0 -1.6 homoserine dehydrogenase compare
AO353_27650 -1.0 -2.8 cell division protein FtsK compare
AO353_11180 -1.0 -8.7 large adhesive protein compare
AO353_22305 -1.0 -1.8 LysR family transcriptional regulator compare
AO353_16915 -1.0 -6.1 hypothetical protein compare
AO353_18505 -1.0 -1.4 translation initiation factor 2 compare
AO353_11170 -1.0 -5.8 hypothetical protein compare
AO353_02300 -1.0 -1.9 MarR family transcriptional regulator compare
AO353_02885 -1.0 -2.2 flagellar biosynthesis protein FlgN compare
AO353_01995 -1.0 -6.8 hypothetical protein compare
AO353_28110 -1.0 -3.7 TetR family transcriptional regulator compare
AO353_15410 -1.0 -1.7 hypothetical protein compare
AO353_23790 -1.0 -2.2 metal-binding protein compare
AO353_15490 -0.9 -1.5 hypothetical protein compare
AO353_18510 -0.9 -2.5 hypothetical protein compare
AO353_06585 -0.9 -4.6 hypothetical protein compare
AO353_14435 -0.9 -3.4 Rieske (2Fe-2S) protein compare
AO353_23945 -0.9 -1.6 hypothetical protein compare
AO353_09235 -0.9 -4.6 phosphoglucomutase compare
AO353_03760 -0.9 -2.9 pilus assembly protein PilZ compare
AO353_25445 -0.9 -2.3 carbonic anhydrase compare
AO353_09840 -0.9 -3.1 chorismate--pyruvate lyase compare
AO353_03290 -0.9 -1.4 peptide deformylase compare
AO353_04365 -0.9 -3.5 recombinase XerD compare
AO353_09010 -0.9 -2.7 hypothetical protein compare
AO353_00590 -0.9 -3.6 cytochrome C oxidase Cbb3 compare
AO353_27010 -0.9 -2.2 alpha-ketoglutarate-dependent dioxygenase compare
AO353_00235 -0.9 -1.9 transcriptional regulator compare
AO353_04175 -0.9 -3.3 glycerol uptake facilitator GlpF compare
AO353_02010 -0.9 -3.9 glycosyl transferase family 1 compare
AO353_01970 -0.9 -5.5 hypothetical protein compare
AO353_01885 -0.9 -4.6 hypothetical protein compare
AO353_21805 -0.9 -2.4 peptidylprolyl isomerase compare
AO353_29280 -0.9 -1.9 hypothetical protein compare
AO353_10445 -0.9 -1.4 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_12350 -0.9 -1.8 preprotein translocase compare
AO353_03715 -0.9 -1.5 H-NS histone compare
AO353_18560 -0.9 -1.9 class I peptide chain release factor compare
AO353_02480 -0.9 -4.7 peptidylprolyl isomerase compare
AO353_00890 -0.9 -3.3 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
AO353_13925 -0.9 -1.5 XRE family transcriptional regulator compare
AO353_09040 -0.9 -0.7 diaminopimelate epimerase compare
AO353_12935 -0.9 -2.4 glycosyltransferase compare
AO353_12365 -0.9 -2.4 phosphoribosyl-AMP cyclohydrolase compare
AO353_13140 -0.8 -3.3 tRNA dimethylallyltransferase compare
AO353_28700 -0.8 -1.6 hypothetical protein compare
AO353_07805 -0.8 -5.0 betaine-aldehyde dehydrogenase compare
AO353_19145 -0.8 -2.9 protease HtpX compare
AO353_08535 -0.8 -4.9 hypothetical protein compare
AO353_20925 -0.8 -1.5 hypothetical protein compare
AO353_00515 -0.8 -1.8 hypothetical protein compare
AO353_22360 -0.8 -1.9 ABC transporter ATP-binding protein compare
AO353_04475 -0.8 -1.8 hypothetical protein compare
AO353_21635 -0.8 -2.8 cobalamin biosynthesis protein CobE compare
AO353_01520 -0.8 -2.4 hypothetical protein compare
AO353_00650 -0.8 -1.4 cytochrome biogenesis protein compare
AO353_00490 -0.8 -1.5 PasA protein compare
AO353_21430 -0.8 -2.2 hypothetical protein compare
AO353_06540 -0.8 -1.7 hypothetical protein compare


Specific Phenotypes

For 9 genes in this experiment

For stress Cholin acetate in Pseudomonas fluorescens FW300-N2E3

For stress Cholin acetate across organisms