Experiment set4IT070 for Pseudomonas fluorescens FW300-N1B4

Compare to:

L-Asparagine carbon source

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_6 -3.8 -5.2 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_2880 -3.6 -12.2 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_5666 -3.5 -3.3 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_15 -3.4 -3.2 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_1624 -3.2 -7.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_1307 -3.2 -3.0 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_1408 -3.1 -4.7 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_2303 -3.1 -13.8 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_2384 -3.0 -11.0 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_1434 -3.0 -6.3 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_1067 -3.0 -6.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_1831 -3.0 -10.9 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_2939 -3.0 -5.8 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf1N1B4_2545 -2.9 -12.5 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_1625 -2.8 -6.2 FIG00956267: hypothetical protein compare
Pf1N1B4_1830 -2.8 -9.1 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_2282 -2.8 -8.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_742 -2.8 -6.4 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_2112 -2.7 -14.1 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_2549 -2.7 -8.3 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_1315 -2.7 -7.9 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_1626 -2.7 -7.2 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_5224 -2.7 -3.9 tRNA-Arg-CCT compare
Pf1N1B4_2547 -2.7 -3.5 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_2548 -2.7 -6.8 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_2878 -2.7 -9.3 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_3697 -2.7 -9.1 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_2491 -2.6 -3.8 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf1N1B4_2338 -2.6 -7.5 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_683 -2.6 -5.4 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_2858 -2.5 -8.7 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_1617 -2.5 -7.9 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_12 -2.5 -6.8 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_5665 -2.5 -4.7 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_2879 -2.5 -5.9 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_776 -2.4 -3.5 Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake compare
Pf1N1B4_847 -2.3 -7.8 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_1627 -2.3 -4.5 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_1565 -2.3 -4.5 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_2337 -2.3 -5.0 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_350 -2.3 -7.4 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_2280 -2.3 -8.6 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_4065 -2.2 -7.5 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_772 -2.2 -5.2 ABC transporter for L-asparagine and L-glutamate, permease component 1 (from data) conserved
Pf1N1B4_2272 -2.2 -3.8 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_3917 -2.2 -4.9 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf1N1B4_578 -2.2 -4.0 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_771 -2.2 -5.8 ABC transporter for L-asparagine and L-glutamate, periplasmic substrate-binding component (from data) conserved
Pf1N1B4_762 -2.0 -5.3 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_2487 -1.9 -7.8 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_2489 -1.9 -6.2 Biotin synthesis protein BioH compare
Pf1N1B4_2377 -1.9 -5.5 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_1906 -1.9 -3.8 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_1153 -1.9 -4.2 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf1N1B4_2026 -1.8 -3.0 Transcriptional regulator compare
Pf1N1B4_773 -1.8 -4.2 ABC transporter for L-asparagine and L-glutamate, permease subunit 2 (from data) compare
Pf1N1B4_1 -1.8 -2.6 Colicin V production protein compare
Pf1N1B4_1568 -1.8 -4.2 Twin-arginine translocation protein TatB compare
Pf1N1B4_1057 -1.8 -3.0 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_1317 -1.8 -3.4 Sensor histidine kinase/response regulator compare
Pf1N1B4_2023 -1.7 -6.2 L-asparaginase (EC 3.5.1.1) (from data) conserved
Pf1N1B4_3812 -1.7 -7.7 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_2024 -1.7 -6.8 sodium/alanine transporter conserved
Pf1N1B4_3833 -1.7 -7.0 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_1545 -1.7 -7.9 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf1N1B4_1837 -1.7 -2.5 Osmotically inducible protein C compare
Pf1N1B4_2859 -1.7 -11.0 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_770 -1.6 -3.2 hypothetical protein compare
Pf1N1B4_2490 -1.6 -5.3 Biotin synthesis protein BioC compare
Pf1N1B4_1329 -1.6 -5.7 Cobalamin biosynthesis protein CobG compare
Pf1N1B4_775 -1.6 -7.0 Signal transduction histidine kinase regulating C4-dicarboxylate transport system (EC 2.7.13.3) conserved
Pf1N1B4_3506 -1.6 -5.8 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_5926 -1.6 -9.5 hypothetical protein compare
Pf1N1B4_2874 -1.6 -2.7 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_1059 -1.6 -3.1 FIG137478: Hypothetical protein YbgI compare
Pf1N1B4_4523 -1.5 -2.7 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_4318 -1.5 -3.0 hypothetical protein compare
Pf1N1B4_2225 -1.5 -8.8 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf1N1B4_2381 -1.5 -10.2 Protein yceI precursor compare
Pf1N1B4_131 -1.5 -2.4 hypothetical protein compare
Pf1N1B4_2488 -1.5 -5.8 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf1N1B4_5925 -1.5 -8.3 hypothetical protein compare
Pf1N1B4_2380 -1.4 -9.7 Cytochrome B561 compare
Pf1N1B4_4039 -1.4 -5.2 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_4212 -1.4 -2.4 Gfa-like protein compare
Pf1N1B4_652 -1.4 -7.5 Sensory box histidine kinase compare
Pf1N1B4_2208 -1.3 -5.8 Polyphosphate kinase (EC 2.7.4.1) compare
Pf1N1B4_1566 -1.3 -5.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_2105 -1.3 -2.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_3081 -1.3 -11.3 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_2348 -1.3 -5.1 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR compare
Pf1N1B4_1614 -1.3 -1.9 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf1N1B4_1105 -1.3 -2.0 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) compare
Pf1N1B4_1326 -1.3 -4.5 Cobalamin biosynthesis protein CbiG / Cobalt-precorrin-3b C17-methyltransferase compare
Pf1N1B4_3518 -1.3 -2.0 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_1113 -1.2 -4.3 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_3878 -1.2 -5.1 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf1N1B4_5383 -1.2 -7.7 hypothetical protein compare
Pf1N1B4_5722 -1.2 -2.1 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf1N1B4_1065 -1.2 -4.8 Histidinol-phosphate aminotransferase (EC 2.6.1.9) compare
Pf1N1B4_3466 -1.2 -2.2 FIG00955605: hypothetical protein compare
Pf1N1B4_4857 -1.1 -4.0 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_128 -1.1 -2.0 Methylglyoxal reductase, acetol producing (EC 1.1.1.-) / 2,5-diketo-D-gluconic acid reductase B (EC 1.1.1.274) compare
Pf1N1B4_5402 -1.1 -2.3 hypothetical protein compare
Pf1N1B4_5357 -1.1 -1.9 hypothetical protein compare
Pf1N1B4_2008 -1.1 -5.8 Phosphogluconate repressor HexR, RpiR family compare
Pf1N1B4_2021 -1.1 -1.7 hypothetical protein compare
Pf1N1B4_629 -1.1 -2.4 Queuosine Biosynthesis QueE Radical SAM compare
Pf1N1B4_3692 -1.1 -2.3 Chaperone protein HtpG compare
Pf1N1B4_4563 -1.1 -1.9 Sulfate transporter compare
Pf1N1B4_3711 -1.1 -3.7 Cobyric acid synthase (EC 6.3.5.10) compare
Pf1N1B4_1331 -1.1 -2.6 Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) compare
Pf1N1B4_961 -1.1 -8.1 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf1N1B4_3715 -1.1 -3.2 Cobalamin synthase compare
Pf1N1B4_5904 -1.1 -1.8 FIG00955320: hypothetical protein compare
Pf1N1B4_4833 -1.1 -2.7 DNA-binding response regulator, LuxR family compare
Pf1N1B4_1475 -1.0 -4.7 FIG00962376: hypothetical protein compare
Pf1N1B4_1888 -1.0 -3.0 Glutamate-aspartate carrier protein compare
Pf1N1B4_1333 -1.0 -3.4 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf1N1B4_960 -1.0 -6.5 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf1N1B4_3870 -1.0 -8.2 Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion compare
Pf1N1B4_2969 -1.0 -7.0 ATPase, AFG1 family compare
Pf1N1B4_4029 -1.0 -1.6 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_1327 -1.0 -5.6 Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) compare
Pf1N1B4_188 -1.0 -1.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_94 -1.0 -2.2 Glutathione S-transferase (EC 2.5.1.18) compare
Pf1N1B4_2734 -1.0 -1.1 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf1N1B4_257 -1.0 -4.0 sensor histidine kinase/response regulator compare
Pf1N1B4_4733 -1.0 -2.0 Fap system putative outer membrane protein compare
Pf1N1B4_3707 -1.0 -4.8 Cobyrinic acid A,C-diamide synthase compare
Pf1N1B4_1472 -1.0 -1.5 Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-) compare
Pf1N1B4_3582 -1.0 -1.5 C-methyltransferase compare
Pf1N1B4_3849 -1.0 -2.7 Transcriptional regulator, GntR family compare
Pf1N1B4_875 -1.0 -1.6 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_3876 -1.0 -5.1 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf1N1B4_1458 -1.0 -5.0 Probable transcription regulator Mig-14 compare
Pf1N1B4_4028 -1.0 -2.5 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_2401 -1.0 -2.1 Lipoprotein, putative compare
Pf1N1B4_2940 -1.0 -1.9 hypothetical protein compare
Pf1N1B4_5133 -1.0 -2.5 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf1N1B4_617 -1.0 -1.6 Carbamate kinase (EC 2.7.2.2) compare
Pf1N1B4_1358 -1.0 -2.5 DnaJ-class molecular chaperone CbpA compare
Pf1N1B4_2209 -0.9 -5.1 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_3595 -0.9 -1.3 Flagellin protein FlaG compare
Pf1N1B4_4558 -0.9 -2.2 Outer membrane lipoprotein-sorting protein compare
Pf1N1B4_1052 -0.9 -2.0 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf1N1B4_626 -0.9 -3.8 Quinolinate synthetase (EC 2.5.1.72) compare
Pf1N1B4_74 -0.9 -1.9 hypothetical protein compare
Pf1N1B4_3879 -0.9 -6.8 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf1N1B4_76 -0.9 -2.0 ATP binding protein compare
Pf1N1B4_2912 -0.9 -1.5 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_3445 -0.9 -2.0 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf1N1B4_2757 -0.9 -2.5 DJ-1/YajL/PfpI superfamily, includes chaperone protein YajL (former ThiJ), parkinsonism-associated protein DJ-1, peptidases PfpI, Hsp31 compare
Pf1N1B4_5652 -0.9 -2.2 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf1N1B4_4699 -0.9 -1.8 Multidrug translocase MdfA compare
Pf1N1B4_3712 -0.9 -4.8 Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) compare
Pf1N1B4_672 -0.9 -2.2 FIG00955538: hypothetical protein compare
Pf1N1B4_3468 -0.9 -1.3 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_3368 -0.9 -1.6 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf1N1B4_2252 -0.9 -2.4 Organosulfonate utilization protein SsuF compare
Pf1N1B4_962 -0.9 -5.4 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf1N1B4_3709 -0.9 -2.3 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf1N1B4_5860 -0.9 -1.6 Two-component response regulator compare
Pf1N1B4_2568 -0.9 -1.8 Translation elongation factor Tu compare
Pf1N1B4_2372 -0.9 -2.9 Transcriptional regulator, LysR family compare
Pf1N1B4_1569 -0.9 -6.4 Twin-arginine translocation protein TatC compare
Pf1N1B4_2147 -0.9 -2.9 Putrescine utilization regulator compare
Pf1N1B4_4549 -0.9 -1.9 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) compare
Pf1N1B4_255 -0.9 -3.0 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf1N1B4_32 -0.9 -2.0 Transcriptional regulator, TetR family compare
Pf1N1B4_2486 -0.9 -1.2 hypothetical protein compare
Pf1N1B4_1300 -0.9 -2.6 hypothetical protein compare
Pf1N1B4_5275 -0.9 -1.6 hypothetical protein compare
Pf1N1B4_3871 -0.9 -6.4 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf1N1B4_4962 -0.9 -2.3 C4-dicarboxylate transport protein compare
Pf1N1B4_1236 -0.9 -3.7 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_740 -0.9 -2.0 Leucyl-tRNA synthetase compare
Pf1N1B4_3880 -0.9 -5.6 hypothetical protein compare
Pf1N1B4_3290 -0.9 -2.1 Alternative cytochrome c oxidase polypeptide CoxP (EC 1.9.3.1) compare
Pf1N1B4_4517 -0.9 -1.9 Dihydropyrimidinase (EC 3.5.2.2) compare
Pf1N1B4_339 -0.9 -1.7 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf1N1B4_4040 -0.9 -1.7 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_758 -0.8 -2.4 Bacterioferritin compare
Pf1N1B4_3328 -0.8 -1.6 Rhodanese-like domain protein compare
Pf1N1B4_3631 -0.8 -2.3 Flagellar motor rotation protein MotA compare
Pf1N1B4_5661 -0.8 -4.0 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) compare
Pf1N1B4_3657 -0.8 -2.0 Pyruvate kinase (EC 2.7.1.40) compare
Pf1N1B4_327 -0.8 -1.1 hypothetical protein compare
Pf1N1B4_5927 -0.8 -7.0 Capsular polysaccharide biosynthesis protein compare
Pf1N1B4_3869 -0.8 -5.7 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf1N1B4_1540 -0.8 -2.3 Type IV pilus biogenesis protein PilP compare
Pf1N1B4_2005 -0.8 -1.3 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_1914 -0.8 -3.0 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) compare
Pf1N1B4_2004 -0.8 -1.4 putative membrane protein compare
Pf1N1B4_4870 -0.8 -1.6 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf1N1B4_3775 -0.8 -1.1 FIG00956876: hypothetical protein compare
Pf1N1B4_3980 -0.8 -1.8 Transcriptional regulator, HxlR family compare
Pf1N1B4_2094 -0.8 -2.3 Outer membrane protein ImpK/VasF, OmpA/MotB domain compare
Pf1N1B4_2417 -0.8 -1.7 Betaine aldehyde dehydrogenase (EC 1.2.1.8) compare
Pf1N1B4_3152 -0.8 -3.2 LysR family transcriptional regulator PA3398 compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source L-Asparagine in Pseudomonas fluorescens FW300-N1B4

For carbon source L-Asparagine across organisms