Experiment set4IT070 for Vibrio cholerae E7946 ATCC 55056

Compare to:

NoPhageControl

200 most important genes:

  gene name fitness t score description  
CSW01_11555 -5.4 -3.7 riboflavin synthase compare
CSW01_06380 -4.7 -3.2 GTP cyclohydrolase II compare
CSW01_11560 -4.4 -8.9 riboflavin biosynthesis protein RibD compare
CSW01_18350 -3.6 -4.1 cell division protein DedD compare
CSW01_00560 -3.1 -9.9 DNA polymerase I compare
CSW01_09525 -3.0 -3.3 DNA translocase FtsK compare
CSW01_12340 -2.9 -5.9 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase compare
CSW01_12320 -2.8 -7.2 3',5'-cyclic-AMP phosphodiesterase compare
CSW01_11780 -2.6 -6.4 exodeoxyribonuclease V subunit beta compare
CSW01_12005 -2.6 -9.0 aerobic respiration two-component sensor histidine kinase ArcB compare
CSW01_05575 -2.1 -7.1 phosphate acetyltransferase compare
CSW01_13445 -2.1 -4.8 elongation factor P compare
CSW01_13805 -2.1 -6.6 Hsp33 family molecular chaperone HslO compare
CSW01_11785 -2.1 -4.6 exonuclease V subunit gamma compare
CSW01_09720 -2.0 -3.3 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
CSW01_03870 -1.9 -2.8 inositol monophosphatase compare
CSW01_01195 -1.9 -6.5 ADP-heptose--LPS heptosyltransferase I compare
CSW01_00015 -1.9 -5.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
CSW01_00650 -1.9 -10.6 tyrosine recombinase XerC compare
CSW01_12250 -1.8 -10.8 site-specific tyrosine recombinase XerD compare
CSW01_04935 -1.8 -1.8 phosphocarrier protein HPr compare
CSW01_09240 -1.8 -6.8 Holliday junction branch migration DNA helicase RuvB compare
CSW01_01965 -1.7 -4.2 glucose-6-phosphate isomerase compare
CSW01_08450 -1.7 -3.8 antimicrobial peptide ABC transporter permease SapB compare
CSW01_13285 -1.6 -5.5 ribulose-phosphate 3-epimerase compare
CSW01_09250 -1.6 -3.4 crossover junction endodeoxyribonuclease RuvC compare
CSW01_11670 -1.6 -3.2 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
CSW01_02875 -1.6 -7.3 DNA recombination/repair protein RecA compare
CSW01_13450 -1.6 -5.0 EF-P beta-lysylation protein EpmB compare
CSW01_14055 -1.6 -6.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
CSW01_10875 -1.5 -6.5 redox-regulated ATPase YchF compare
CSW01_17000 -1.5 -3.6 DUF3332 domain-containing protein compare
CSW01_02490 -1.5 -8.3 glutathione synthetase compare
CSW01_04650 -1.5 -2.5 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
CSW01_08240 -1.4 -5.3 ATP-binding protein compare
CSW01_03325 -1.4 -3.3 porin compare
CSW01_05195 -1.4 -5.8 sigma-54-dependent Fis family transcriptional regulator compare
CSW01_03985 -1.4 -6.7 GMP synthase (glutamine-hydrolyzing) compare
CSW01_11535 -1.4 -5.9 thiamine-phosphate kinase compare
CSW01_01265 -1.3 -6.0 ADP-L-glycero-D-mannoheptose-6-epimerase compare
CSW01_09245 -1.3 -6.0 Holliday junction branch migration protein RuvA compare
CSW01_04375 -1.3 -4.3 SsrA-binding protein compare
CSW01_13420 -1.3 -2.5 elongation factor P--(R)-beta-lysine ligase compare
CSW01_03410 -1.3 -2.7 polyribonucleotide nucleotidyltransferase compare
CSW01_00095 -1.2 -1.4 hypothetical protein compare
CSW01_03785 -1.2 -4.7 phosphate ABC transporter permease compare
CSW01_00940 -1.1 -2.6 hypothetical protein compare
CSW01_03795 -1.1 -2.4 phosphate ABC transporter ATP-binding protein compare
CSW01_08620 -1.1 -8.5 chromosome partition protein MukB compare
CSW01_01245 -1.1 -4.6 lipopolysaccharide heptosyltransferase II compare
CSW01_01490 -1.1 -2.3 Fis family transcriptional regulator compare
CSW01_01830 -1.0 -2.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
CSW01_02970 -1.0 -6.2 glutamate--cysteine ligase compare
CSW01_10255 -1.0 -1.0 cytochrome c-type biogenesis protein CcmH compare
CSW01_01015 -1.0 -7.8 DNA helicase II compare
CSW01_07195 -1.0 -2.1 cytochrome biogenesis protein compare
CSW01_03695 -1.0 -5.8 ribosomal large subunit pseudouridine synthase D compare
CSW01_12815 -1.0 -6.2 RNA polymerase sigma-54 factor compare
CSW01_12465 -1.0 -4.3 elongation factor 4 compare
CSW01_00415 -0.9 -2.0 hypothetical protein compare
CSW01_06585 -0.9 -2.8 fumarate hydratase compare
CSW01_14080 -0.9 -1.4 DUF3283 domain-containing protein compare
CSW01_01820 -0.9 -3.5 N-acetylmuramoyl-L-alanine amidase compare
CSW01_18730 -0.9 -1.9 DUF406 domain-containing protein compare
CSW01_10190 -0.9 -4.0 nucleoid-associated protein compare
CSW01_09920 -0.9 -1.3 chromosome partitioning protein ParA compare
CSW01_01515 -0.9 -2.2 type II 3-dehydroquinate dehydratase compare
CSW01_12365 -0.9 -3.5 inorganic phosphate transporter compare
CSW01_03790 -0.8 -3.0 phosphate ABC transporter, permease protein PstA compare
CSW01_05265 -0.8 -0.7 methionine--tRNA ligase compare
CSW01_00660 -0.8 -7.1 sensor domain-containing phosphodiesterase compare
CSW01_11520 -0.8 -4.0 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
CSW01_03330 -0.8 -3.8 transcription elongation factor GreA compare
CSW01_03880 -0.8 -2.0 HTH-type transcriptional regulator IscR compare
CSW01_00380 -0.8 -1.8 hypothetical protein compare
CSW01_01485 -0.8 -3.9 transcriptional regulator compare
CSW01_13515 -0.8 -2.6 HslU--HslV peptidase proteolytic subunit compare
CSW01_05580 -0.8 -3.6 acetate kinase compare
CSW01_13395 -0.8 -4.8 PadR family transcriptional regulator compare
CSW01_07150 -0.7 -2.4 spermidine/putrescine ABC transporter permease PotC compare
CSW01_10265 -0.7 -3.7 c-type cytochrome biogenesis protein CcmF compare
CSW01_00450 -0.7 -0.6 SCP2 domain-containing protein compare
CSW01_08630 -0.7 -4.0 condensin subunit F compare
CSW01_17745 -0.7 -2.4 diacylglycerol kinase compare
CSW01_03215 -0.7 -5.6 ABC transporter ATP-binding protein compare
CSW01_12130 -0.7 -1.8 DUF721 domain-containing protein compare
CSW01_08625 -0.7 -3.4 chromosome partition protein MukE compare
CSW01_13675 -0.7 -3.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis(diphosphate) 3'-diphosphatase compare
CSW01_11565 -0.7 -1.5 transcriptional regulator NrdR compare
CSW01_04150 -0.7 -3.3 RNA methyltransferase compare
CSW01_10290 -0.7 -3.6 cytochrome c biogenesis ATP-binding export protein CcmA compare
CSW01_03475 -0.7 -3.1 ATP-dependent RNA helicase SrmB compare
CSW01_15870 -0.7 -1.4 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_00065 -0.6 -4.3 DNA replication and repair protein RecF compare
CSW01_03205 -0.6 -4.6 iron ABC transporter substrate-binding protein compare
CSW01_16130 -0.6 -1.0 acetyltransferase compare
CSW01_08445 -0.6 -2.8 ABC transporter substrate-binding protein compare
CSW01_06030 -0.6 -1.3 helicase compare
CSW01_03210 -0.6 -5.3 iron ABC transporter permease compare
CSW01_01125 -0.6 -4.4 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
CSW01_18635 -0.6 -3.5 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) compare
CSW01_07580 -0.6 -0.9 hypothetical protein compare
CSW01_03815 -0.6 -3.0 peroxidase compare
CSW01_00470 -0.6 -2.8 twin-arginine translocase subunit TatC compare
CSW01_00540 -0.6 -1.5 hypothetical protein compare
CSW01_15410 -0.6 -2.7 hypothetical protein compare
CSW01_02450 -0.6 -4.5 pyrroline-5-carboxylate reductase compare
CSW01_16325 -0.6 -1.1 hypothetical protein compare
CSW01_12240 -0.6 -4.8 single-stranded-DNA-specific exonuclease RecJ compare
CSW01_14085 -0.6 -1.3 transcriptional regulator compare
CSW01_11730 -0.6 -1.9 2-dehydropantoate 2-reductase compare
CSW01_16030 -0.6 -2.2 DUF3709 domain-containing protein compare
CSW01_07720 -0.6 -1.2 DUF3802 domain-containing protein compare
CSW01_02260 -0.6 -0.8 C4-dicarboxylate ABC transporter substrate-binding protein compare
CSW01_12680 -0.6 -4.6 cytosol aminopeptidase compare
CSW01_15865 -0.6 -1.8 DUF3465 domain-containing protein compare
CSW01_17060 -0.6 -2.1 DUF2861 domain-containing protein compare
CSW01_05935 -0.6 -3.4 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
CSW01_05925 -0.6 -1.9 tryptophan synthase subunit alpha compare
CSW01_08705 -0.6 -2.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
CSW01_05825 -0.6 -2.9 transcriptional regulator HexR compare
CSW01_08465 -0.6 -1.3 ABC transporter ATP-binding protein compare
CSW01_05090 -0.6 -2.9 tRNA pseudouridine(38-40) synthase TruA compare
CSW01_10270 -0.6 -2.0 cytochrome c-type biogenesis protein CcmE compare
CSW01_10710 -0.6 -3.4 deferrochelatase compare
CSW01_09955 -0.6 -2.9 L-asparaginase 1 compare
CSW01_05375 -0.5 -2.8 recombination protein RecR compare
CSW01_06390 -0.5 -3.3 thiol oxidoreductase compare
CSW01_03770 -0.5 -3.0 phosphate ABC transporter substrate-binding protein compare
CSW01_14625 -0.5 -1.0 hypothetical protein compare
CSW01_10750 -0.5 -2.7 outer membrane protein assembly factor BamC compare
CSW01_05945 -0.5 -2.5 type 1 glutamine amidotransferase compare
CSW01_17425 -0.5 -2.0 DUF2892 domain-containing protein compare
CSW01_07715 -0.5 -2.4 lipoprotein NlpC compare
CSW01_02270 -0.5 -2.8 malate dehydrogenase compare
CSW01_05505 -0.5 -1.4 response regulator compare
CSW01_04585 -0.5 -3.6 tRNA 4-thiouridine(8) synthase ThiI compare
CSW01_14495 -0.5 -1.7 NUDIX hydrolase compare
CSW01_18185 -0.5 -2.2 DEAD/DEAH box family ATP-dependent RNA helicase compare
CSW01_02755 -0.5 -1.1 glutamyl-tRNA amidotransferase compare
CSW01_06920 -0.5 -1.8 DUF2760 domain-containing protein compare
CSW01_07200 -0.5 -1.0 cbb3-type cytochrome oxidase assembly protein CcoS compare
CSW01_01800 -0.5 -1.1 tRNA-Met compare
CSW01_16435 -0.5 -1.0 DUF3265 domain-containing protein compare
CSW01_07445 -0.5 -1.8 macrodomain Ter protein MatP compare
CSW01_03980 -0.5 -3.6 IMP dehydrogenase compare
CSW01_03950 -0.5 -1.9 hypothetical protein compare
CSW01_05930 -0.5 -4.0 tryptophan synthase subunit beta compare
CSW01_18630 -0.5 -2.4 6-phosphogluconolactonase compare
CSW01_03050 -0.5 -3.1 cytochrome b compare
CSW01_15730 -0.5 -0.8 VOC family protein compare
CSW01_16785 -0.5 -2.1 hypothetical protein compare
CSW01_02085 -0.5 -3.0 UTP--glucose-1-phosphate uridylyltransferase compare
CSW01_11945 -0.5 -2.3 cation-binding protein compare
CSW01_13185 -0.5 -3.0 peptidylprolyl isomerase compare
CSW01_00615 -0.5 -1.5 hypothetical protein compare
CSW01_03055 -0.5 -1.5 cytochrome c1 compare
CSW01_15120 -0.5 -1.8 iron(III) ABC transporter permease compare
CSW01_05950 -0.5 -4.0 anthranilate synthase component I compare
CSW01_07565 -0.5 -2.5 3-deoxy-7-phosphoheptulonate synthase compare
CSW01_13300 -0.5 -2.5 3-dehydroquinate synthase compare
CSW01_08610 -0.5 -1.5 LysE family translocator compare
CSW01_10440 -0.5 -1.4 succinate dehydrogenase flavoprotein subunit compare
CSW01_05120 -0.5 -3.0 sodium:proton antiporter compare
CSW01_18830 -0.5 -1.9 DeoR/GlpR family transcriptional regulator compare
CSW01_03340 -0.4 -2.3 ribosomal RNA large subunit methyltransferase E compare
CSW01_01185 -0.4 -3.3 ADP-heptose--LPS heptosyltransferase compare
CSW01_10295 -0.4 -1.3 DUF2802 domain-containing protein compare
CSW01_01555 -0.4 -3.6 ATP-dependent RNA helicase RhlB compare
CSW01_04820 -0.4 -3.5 serine hydroxymethyltransferase compare
CSW01_04930 -0.4 -2.4 phosphoenolpyruvate-protein phosphotransferase PtsI compare
CSW01_09485 -0.4 -1.4 DUF1425 domain-containing protein compare
CSW01_13635 -0.4 -3.4 thiol:disulfide interchange protein DsbD compare
CSW01_10280 -0.4 -2.3 heme exporter protein C compare
CSW01_09460 -0.4 -2.2 N-acetyltransferase compare
CSW01_01550 -0.4 -3.8 guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase compare
CSW01_05985 -0.4 -1.8 thioredoxin-disulfide reductase compare
CSW01_18140 -0.4 -2.5 hypothetical protein compare
CSW01_07520 -0.4 -2.4 RNA chaperone ProQ compare
CSW01_08660 -0.4 -2.2 PurR family transcriptional regulator compare
CSW01_09215 -0.4 -1.3 tol-pal system-associated acyl-CoA thioesterase compare
CSW01_11255 -0.4 -2.8 flagellar biosynthesis protein FlgP compare
CSW01_07005 -0.4 -1.5 hypothetical protein compare
CSW01_09375 -0.4 -1.5 YfbU family protein compare
CSW01_18190 -0.4 -3.2 exoribonuclease 2 compare
CSW01_14265 -0.4 -1.4 N-acetyltransferase compare
CSW01_10170 -0.4 -1.4 MarC family protein compare
CSW01_09600 -0.4 -1.5 DNA-binding protein HU-beta compare
CSW01_10285 -0.4 -1.8 heme exporter protein CcmB compare
CSW01_04285 -0.4 -1.2 toxin coregulated pilus biosynthesis protein R compare
CSW01_00465 -0.4 -1.4 twin-arginine translocase subunit TatB compare
CSW01_02205 -0.4 -3.0 ribonuclease E/G compare
CSW01_17885 -0.4 -1.4 hypothetical protein compare
CSW01_08730 -0.4 -1.8 phage-shock protein compare
CSW01_07960 -0.4 -1.1 DUF417 domain-containing protein compare
CSW01_05900 -0.4 -1.7 carboxy-S-adenosyl-L-methionine synthase CmoA compare
CSW01_09420 -0.4 -1.3 DUF2062 domain-containing protein compare
CSW01_07460 -0.4 -0.8 ribosome modulation factor compare
CSW01_15405 -0.4 -1.2 integron integrase compare
CSW01_05490 -0.4 -2.5 L-threonylcarbamoyladenylate synthase compare


Specific Phenotypes

None in this experiment

For Vibrio cholerae E7946 ATCC 55056 in phage experiments

For phage nophage across organisms