Experiment set4IT070 for Methanococcus maripaludis S2

Compare to:

Formate deepwell vitamin and casamino acid FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS07845 -4.9 -5.9 LL-diaminopimelate aminotransferase compare
MMP_RS01020 -4.8 -2.1 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS06975 -4.8 -5.1 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS03450 -4.8 -5.0 glycine synthesis protein GlyXS (from data) compare
MMP_RS07345 -4.5 -11.0 glycine synthesis protein GlyXL (from data) compare
MMP_RS03640 -4.5 -6.4 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS05500 -4.5 -12.5 2-isopropylmalate synthase compare
MMP_RS06680 -4.3 -21.5 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS06700 -4.1 -19.3 hypothetical protein compare
MMP_RS06685 -4.0 -15.9 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS00295 -3.9 -3.9 gamma carbonic anhydrase family protein compare
MMP_RS03315 -3.9 -2.5 ferrous iron transport protein A compare
MMP_RS06715 -3.9 -21.2 cache domain-containing protein compare
MMP_RS03035 -3.8 -7.6 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS06705 -3.7 -12.8 formate/nitrite transporter family protein compare
MMP_RS07730 -3.7 -3.7 pyruvate synthase subunit beta compare
MMP_RS06730 -3.6 -3.7 phosphopantothenate/pantothenate synthetase compare
MMP_RS06720 -3.6 -12.8 response regulator transcription factor compare
MMP_RS05550 -3.5 -1.5 cation:proton antiporter compare
MMP_RS06345 -3.5 -17.1 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS06625 -3.4 -3.7 DNA primase compare
MMP_RS01175 -3.4 -7.7 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS04605 -3.3 -10.4 cobalt ECF transporter T component CbiQ compare
MMP_RS03015 -3.3 -14.1 GTP 3' 8-cyclase MoaA compare
MMP_RS01455 -3.3 -14.6 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS06895 -3.3 -4.0 selenocysteine-specific translation elongation factor compare
MMP_RS03960 -3.3 -2.0 hypothetical protein compare
MMP_RS07735 -3.3 -2.0 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS01545 -3.2 -2.6 CBS domain-containing protein compare
MMP_RS06350 -3.2 -8.9 HesA/MoeB/ThiF family protein compare
MMP_RS06270 -3.2 -8.1 TIGR00300 family protein compare
MMP_RS07365 -3.1 -16.5 2-phosphoglycerate kinase compare
MMP_RS08745 -3.1 -10.5 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS05100 -3.1 -25.1 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMP_RS06355 -3.1 -5.4 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS05060 -3.1 -18.4 AAA family ATPase compare
MMP_RS05515 -3.0 -9.1 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS05085 -3.0 -15.7 AAA family ATPase compare
MMP_RS04215 -3.0 -13.6 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS05095 -3.0 -14.1 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS04620 -3.0 -16.5 cobalt transporter CbiM compare
MMP_RS07005 -3.0 -1.6 4Fe-4S binding protein compare
MMP_RS00300 -3.0 -1.5 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS05090 -2.9 -12.4 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS01005 -2.9 -2.9 riboflavin synthase compare
MMP_RS05930 -2.9 -4.0 3-isopropylmalate dehydratase large subunit compare
MMP_RS07445 -2.8 -8.4 helix-turn-helix domain-containing protein compare
MMP_RS06375 -2.8 -11.4 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS05075 -2.7 -20.0 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMP_RS04615 -2.7 -6.1 PDGLE domain-containing protein compare
MMP_RS07545 -2.7 -2.5 HTH domain-containing protein compare
MMP_RS05080 -2.7 -20.3 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS06340 -2.7 -11.8 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS01500 -2.6 -3.9 CBS domain-containing protein compare
MMP_RS05070 -2.6 -8.8 4Fe-4S dicluster domain-containing protein compare
MMP_RS02195 -2.6 -8.5 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS08635 -2.6 -3.7 UbiA family prenyltransferase compare
MMP_RS05055 -2.6 -16.8 DUF166 domain-containing protein compare
MMP_RS03435 -2.6 -4.4 ketol-acid reductoisomerase compare
MMP_RS05265 -2.6 -3.7 2-isopropylmalate synthase compare
MMP_RS01380 -2.5 -6.1 PHP domain-containing protein compare
MMP_RS07635 -2.5 -7.8 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS03420 -2.5 -4.2 acetolactate synthase small subunit compare
MMP_RS06630 -2.4 -2.5 UPF0058 family protein compare
MMP_RS04585 -2.4 -10.0 AIR synthase related protein compare
MMP_RS07605 -2.4 -4.6 diadenylate cyclase compare
MMP_RS06400 -2.4 -3.5 4Fe-4S binding protein compare
MMP_RS08300 -2.3 -2.3 metal-sulfur cluster assembly factor compare
MMP_RS06930 -2.3 -13.2 MBL fold metallo-hydrolase compare
MMP_RS04500 -2.3 -16.8 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS08100 -2.3 -9.9 8-amino-7-oxononanoate synthase compare
MMP_RS08240 -2.3 -11.7 methanogenesis marker 16 metalloprotein compare
MMP_RS08790 -2.3 -3.6 translation initiation factor IF-2 subunit alpha compare
MMP_RS00290 -2.3 -8.0 hypothetical protein compare
MMP_RS07380 -2.2 -3.8 transcription elongation factor Spt5 compare
MMP_RS07185 -2.2 -13.8 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS04890 -2.2 -1.6 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS08095 -2.2 -11.5 dethiobiotin synthase compare
MMP_RS00305 -2.2 -4.2 phosphoribosyl-ATP diphosphatase compare
MMP_RS08105 -2.2 -11.7 6-carboxyhexanoate--CoA ligase compare
MMP_RS08820 -2.2 -7.7 hypothetical protein compare
MMP_RS05425 -2.2 -6.5 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS06370 -2.1 -9.3 biotin synthase BioB compare
MMP_RS00685 -2.1 -6.4 2-phospho-L-lactate guanylyltransferase compare
MMP_RS08460 -2.1 -3.6 proteasome-activating nucleotidase compare
MMP_RS08210 -2.1 -3.5 phosphatidylglycerophosphatase A compare
MMP_RS08645 -2.1 -8.9 UPF0179 family protein compare
MMP_RS05875 -2.1 -4.3 hydroxyethylthiazole kinase compare
MMP_RS03025 -2.1 -6.2 molybdenum cofactor guanylyltransferase compare
MMP_RS01830 -2.0 -3.8 tRNA-Val compare
MMP_RS01795 -2.0 -2.4 methanogenesis marker 6 protein compare
MMP_RS04780 -2.0 -4.2 ribonuclease P compare
MMP_RS05065 -2.0 -9.8 CooT family nickel-binding protein compare
MMP_RS09020 -2.0 -2.6 hypothetical protein compare
MMP_RS02340 -2.0 -2.6 DNA-directed RNA polymerase subunit E'' compare
MMP_RS03400 -2.0 -4.0 archease compare
MMP_RS02355 -2.0 -5.3 30S ribosomal protein S27ae compare
MMP_RS07645 -2.0 -8.9 aldehyde dehydrogenase family protein compare
MMP_RS07575 -1.9 -5.4 RNA ligase partner protein compare
MMP_RS06120 -1.9 -3.4 UPF0147 family protein compare
MMP_RS01700 -1.9 -2.2 dihydroxy-acid dehydratase compare
MMP_RS02010 -1.9 -11.5 PHP domain-containing protein compare
MMP_RS07525 -1.8 -9.9 4Fe-4S binding protein compare
MMP_RS08330 -1.8 -6.1 NADH-quinone oxidoreductase subunit H compare
MMP_RS02280 -1.8 -1.7 DUF211 domain-containing protein compare
MMP_RS00115 -1.8 -13.7 radical SAM protein compare
MMP_RS00455 -1.8 -11.0 orotate phosphoribosyltransferase-like protein compare
MMP_RS08720 -1.8 -2.4 4Fe-4S binding protein compare
MMP_RS04790 -1.8 -11.4 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS07195 -1.7 -9.8 M20 family metallo-hydrolase compare
MMP_RS01610 -1.7 -4.5 hypothetical protein compare
MMP_RS01265 -1.7 -3.0 hypothetical protein compare
MMP_RS03580 -1.7 -4.5 signal recognition particle-docking protein FtsY compare
MMP_RS06285 -1.7 -4.5 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS01325 -1.7 -3.7 dihydroneopterin aldolase family protein compare
MMP_RS02875 -1.6 -11.8 chorismate pyruvate-lyase family protein compare
MMP_RS06105 -1.6 -10.7 hydrogenase maturation peptidase HycI compare
MMP_RS06295 -1.5 -7.0 methanogenesis marker 14 protein compare
MMP_RS05430 -1.5 -4.5 TIGR00288 family NYN domain-containing protein compare
MMP_RS00130 -1.5 -2.3 nickel-responsive transcriptional regulator NikR compare
MMP_RS01755 -1.5 -2.1 DUF2097 domain-containing protein compare
MMP_RS02190 -1.5 -3.6 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS05540 -1.5 -4.5 hypothetical protein compare
MMP_RS08715 -1.4 -3.0 formylmethanofuran dehydrogenase subunit B compare
MMP_RS07555 -1.4 -1.3 monovalent cation/H+ antiporter subunit E compare
MMP_RS01225 -1.4 -5.5 DUF5379 domain-containing protein compare
MMP_RS06230 -1.4 -4.4 helix-turn-helix domain-containing protein compare
MMP_RS04685 -1.4 -4.4 DUF126 domain-containing protein compare
MMP_RS07630 -1.4 -1.9 ATP-binding cassette domain-containing protein compare
MMP_RS07385 -1.4 -1.4 protein translocase SEC61 complex subunit gamma compare
MMP_RS05765 -1.4 -5.7 M42 family metallopeptidase compare
MMP_RS01985 -1.4 -5.4 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS00750 -1.4 -3.1 fumarate hydratase compare
MMP_RS06925 -1.4 -2.8 ribonuclease VapC4 compare
MMP_RS07600 -1.4 -2.6 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS07720 -1.3 -9.7 4Fe-4S binding protein compare
MMP_RS08760 -1.3 -2.5 hypothetical protein compare
MMP_RS04775 -1.3 -3.8 adenosylhomocysteinase compare
MMP_RS02170 -1.3 -6.5 CBS domain-containing protein compare
MMP_RS05555 -1.3 -2.2 DUF4040 domain-containing protein compare
MMP_RS00895 -1.3 -4.1 hypothetical protein compare
MMP_RS07580 -1.3 -3.6 DUF356 domain-containing protein compare
MMP_RS01220 -1.3 -7.1 hypothetical protein compare
MMP_RS07710 -1.3 -7.4 cell division protein FtsZ compare
MMP_RS01365 -1.3 -3.0 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS05925 -1.3 -3.7 small nuclear ribonucleoprotein compare
MMP_RS08435 -1.2 -2.2 Era-like GTP-binding protein compare
MMP_RS07390 -1.2 -2.6 cell division protein FtsZ compare
MMP_RS03600 -1.2 -2.8 triose-phosphate isomerase compare
MMP_RS06865 -1.2 -1.9 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS00475 -1.2 -7.7 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS02345 -1.2 -4.1 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS06475 -1.2 -3.8 FAD-dependent oxidoreductase compare
MMP_RS08445 -1.1 -2.7 DUF2099 family protein compare
MMP_RS05845 -1.1 -2.7 tRNA-intron lyase compare
MMP_RS08165 -1.1 -2.2 phosphoglycerate dehydrogenase compare
MMP_RS06885 -1.1 -3.1 50S ribosome-binding GTPase compare
MMP_RS00320 -1.1 -2.3 class I SAM-dependent methyltransferase compare
MMP_RS05920 -1.1 -0.9 50S ribosomal protein L37e compare
MMP_RS02800 -1.1 -6.7 nucleotidyltransferase domain-containing protein compare
MMP_RS02135 -1.1 -3.6 DUF5612 domain-containing protein compare
MMP_RS06200 -1.1 -7.5 M24 family metallopeptidase compare
MMP_RS06175 -1.1 -6.0 winged helix-turn-helix transcriptional regulator compare
MMP_RS06215 -1.1 -2.7 30S ribosomal protein S6e compare
MMP_RS03475 -1.1 -0.9 hypothetical protein compare
MMP_RS06020 -1.1 -3.8 archaeoflavoprotein AfpA compare
MMP_RS05850 -1.1 -4.1 Ldh family oxidoreductase compare
MMP_RS00620 -1.1 -7.8 4Fe-4S binding protein compare
MMP_RS06315 -1.1 -1.5 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS00310 -1.1 -6.6 CBS domain-containing protein compare
MMP_RS08650 -1.0 -2.8 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS01720 -1.0 -1.9 replication factor C large subunit compare
MMP_RS02900 -1.0 -0.9 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS08595 -1.0 -1.5 flagellar protein C compare
MMP_RS01865 -1.0 -2.2 GPR1/FUN34/YaaH family transporter compare
MMP_RS03250 -1.0 -2.6 MJ1244 family protein compare
MMP_RS00110 -1.0 -2.8 hypothetical protein compare
MMP_RS00515 -1.0 -1.1 DUF655 domain-containing protein compare
MMP_RS03145 -0.9 -4.4 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS01475 -0.9 -5.6 phosphosulfolactate synthase compare
MMP_RS02165 -0.9 -5.4 tRNA-dihydrouridine synthase compare
MMP_RS07200 -0.9 -4.4 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS03140 -0.9 -6.4 hypothetical protein compare
MMP_RS01385 -0.9 -0.8 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS02145 -0.9 -5.0 winged helix-turn-helix transcriptional regulator compare
MMP_RS01960 -0.9 -0.9 hypothetical protein compare
MMP_RS05545 -0.9 -3.7 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS05345 -0.9 -4.5 hypothetical protein compare
MMP_RS06130 -0.9 -2.6 peptidylprolyl isomerase compare
MMP_RS04870 -0.9 -4.2 TIGR02253 family HAD-type hydrolase compare
MMP_RS00720 -0.9 -6.2 metal-dependent hydrolase compare
MMP_RS01800 -0.8 -3.2 TIGR00303 family protein compare
MMP_RS01725 -0.8 -3.6 class I SAM-dependent methyltransferase family protein compare
MMP_RS07420 -0.8 -2.8 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS07425 -0.8 -4.4 GTP-binding protein compare
MMP_RS02235 -0.8 -5.5 CBS domain-containing protein compare
MMP_RS03590 -0.8 -4.3 METTL5 family protein compare
MMP_RS06980 -0.8 -4.4 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS03095 -0.8 -4.7 diphthine synthase compare
MMP_RS00050 -0.8 -5.0 AarF/UbiB family protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments

For nutrient t1 Sodium acetate across organisms