Experiment set4IT070 for Methanococcus maripaludis S2

Compare to:

Formate deepwell vitamin and casamino acid FREE

200 most detrimental genes:

  gene name fitness t score description  
MMP_RS01370 +3.1 27.8 acetate--CoA ligase family protein compare
MMP_RS03215 +1.8 16.1 MBL fold metallo-hydrolase compare
MMP_RS07115 +1.7 11.9 MBL fold metallo-hydrolase compare
MMP_RS07355 +0.9 2.0 transcription factor S compare
MMP_RS02605 +0.9 1.7 MotA/TolQ/ExbB proton channel family protein compare
MMP_RS03390 +0.8 4.9 malate dehydrogenase compare
MMP_RS02310 +0.8 2.6 RimK-like ATPgrasp N-terminal domain-containing protein compare
MMP_RS08940 +0.7 1.9 MetS family NSS transporter small subunit compare
MMP_RS05535 +0.7 3.3 hypothetical protein compare
MMP_RS02245 +0.6 2.6 hypothetical protein compare
MMP_RS07415 +0.6 3.6 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare
MMP_RS03465 +0.6 1.5 adenine phosphoribosyltransferase compare
MMP_RS08660 +0.5 2.8 DHH family phosphoesterase compare
MMP_RS02230 +0.5 4.1 sodium-dependent transporter compare
MMP_RS00915 +0.5 2.7 DUF116 domain-containing protein compare
MMP_RS04520 +0.5 1.9 nucleoside deaminase compare
MMP_RS03385 +0.5 1.1 cation diffusion facilitator family transporter compare
MMP_RS01525 +0.5 1.8 nucleoside-diphosphate kinase compare
MMP_RS02410 +0.5 1.9 ABC transporter substrate-binding protein compare
MMP_RS06575 +0.5 2.8 fluoride efflux transporter CrcB compare
MMP_RS06770 +0.5 3.0 DHH family phosphoesterase compare
MMP_RS08315 +0.4 1.0 S-methyl-5-thioribose-1-phosphate isomerase compare
MMP_RS08455 +0.4 1.7 multiprotein bridging factor aMBF1 compare
MMP_RS06335 +0.4 2.6 HAD family hydrolase compare
MMP_RS07890 +0.4 1.2 OB-fold nucleic acid binding domain-containing protein compare
MMP_RS06490 +0.4 2.6 hypothetical protein compare
MMP_RS08350 +0.4 0.8 hypothetical protein compare
MMP_RS07125 +0.4 1.4 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS08310 +0.4 1.5 TMEM165/GDT1 family protein compare
MMP_RS01420 +0.4 1.6 hypothetical protein compare
MMP_RS02265 +0.4 1.5 nitroreductase family protein compare
MMP_RS04480 +0.4 3.4 lysine 2 3-aminomutase compare
MMP_RS01650 +0.4 0.8 sulfurtransferase TusA family protein compare
MMP_RS05985 +0.4 1.5 hypothetical protein compare
MMP_RS08930 +0.4 0.9 hypothetical protein compare
MMP_RS07725 +0.4 2.4 4Fe-4S dicluster domain-containing protein compare
MMP_RS03320 +0.4 0.9 metal-dependent transcriptional regulator compare
MMP_RS08280 +0.4 1.9 proteasome assembly chaperone family protein compare
MMP_RS07095 +0.4 1.1 PspC domain-containing protein compare
MMP_RS03395 +0.4 1.9 hypothetical protein compare
MMP_RS06860 +0.4 1.0 4Fe-4S binding protein compare
MMP_RS06485 +0.4 0.7 zinc ribbon domain-containing protein compare
MMP_RS03890 +0.4 1.5 DUF2540 domain-containing protein compare
MMP_RS02370 +0.4 1.8 NifB/NifX family molybdenum-iron cluster-binding protein compare
MMP_RS04485 +0.4 3.0 putative beta-lysine N-acetyltransferase compare
MMP_RS01620 +0.3 1.6 hypothetical protein compare
MMP_RS08075 +0.3 2.4 DUF749 domain-containing protein compare
MMP_RS01085 +0.3 1.2 hypothetical protein compare
MMP_RS08675 +0.3 1.6 class III signal peptide-containing protein compare
MMP_RS06545 +0.3 1.6 ferredoxin family protein compare
MMP_RS08630 +0.3 1.7 archaellar assembly protein FlaJ compare
MMP_RS03340 +0.3 0.6 ABC transporter ATP-binding protein compare
MMP_RS07850 +0.3 1.8 prephenate dehydratase compare
MMP_RS04105 +0.3 1.6 MarR family transcriptional regulator compare
MMP_RS08275 +0.3 2.6 hypothetical protein compare
MMP_RS02490 +0.3 1.4 hypothetical protein compare
MMP_RS07895 +0.3 2.1 cytochrome c compare
MMP_RS02675 +0.3 0.9 hypothetical protein compare
MMP_RS01570 +0.3 0.9 hypothetical protein compare
MMP_RS00125 +0.3 0.9 DUF2798 domain-containing protein compare
MMP_RS02905 +0.3 1.2 2-thiouracil desulfurase family protein compare
MMP_RS01685 +0.3 1.0 indolepyruvate oxidoreductase subunit beta compare
MMP_RS08980 +0.3 1.7 hypothetical protein compare
MMP_RS00705 +0.3 1.2 hypothetical protein compare
MMP_RS09050 +0.3 1.3 CAP domain-containing protein compare
MMP_RS05435 +0.3 2.2 5'/3'-nucleotidase SurE compare
MMP_RS00325 +0.3 0.8 RNA-binding protein compare
MMP_RS02790 +0.3 0.7 class III signal peptide-containing protein compare
MMP_RS06555 +0.3 1.5 cupin domain-containing protein compare
MMP_RS00675 +0.3 0.6 nitroreductase family protein compare
MMP_RS03150 +0.3 2.2 phosphoglycerate mutase compare
MMP_RS01165 +0.3 2.0 DUF434 domain-containing protein compare
MMP_RS07085 +0.3 2.2 ribonuclease HII compare
MMP_RS02770 +0.3 1.6 hypothetical protein compare
MMP_RS01965 +0.3 1.3 DUF1616 domain-containing protein compare
MMP_RS06570 +0.3 1.2 DUF190 domain-containing protein compare
MMP_RS01260 +0.3 1.2 HDIG domain-containing protein compare
MMP_RS08500 +0.3 1.3 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS06600 +0.3 0.6 class III signal peptide-containing protein compare
MMP_RS07135 +0.3 1.8 coenzyme F420 hydrogenase subunit beta compare
MMP_RS06155 +0.3 1.1 DUF4186 domain-containing protein compare
MMP_RS06325 +0.3 0.8 hypothetical protein compare
MMP_RS00945 +0.3 0.6 PadR family transcriptional regulator compare
MMP_RS06460 +0.3 1.9 pyrimidine dimer DNA glycosylase/endonuclease V compare
MMP_RS03405 +0.3 2.0 RNA 3'-terminal phosphate cyclase compare
MMP_RS00660 +0.3 2.0 alkaline phosphatase family protein compare
MMP_RS05900 +0.3 1.8 tetratricopeptide repeat protein compare
MMP_RS00865 +0.3 1.4 SLC13 family permease compare
MMP_RS02475 +0.2 1.1 hypothetical protein compare
MMP_RS08230 +0.2 1.9 50S ribosomal protein L11 methyltransferase compare
MMP_RS02935 +0.2 1.1 A24 family peptidase compare
MMP_RS08335 +0.2 1.4 NADH-quinone oxidoreductase subunit B family protein compare
MMP_RS08620 +0.2 1.5 flagellar accessory protein FlaH compare
MMP_RS01515 +0.2 1.7 PINc/VapC family ATPase compare
MMP_RS05980 +0.2 1.5 ferritin compare
MMP_RS03755 +0.2 2.0 MarR family transcriptional regulator compare
MMP_RS01785 +0.2 1.2 hypothetical protein compare
MMP_RS01110 +0.2 1.0 FmdE family protein compare
MMP_RS07775 +0.2 1.2 alanine dehydrogenase compare
MMP_RS08370 +0.2 0.3 cation:proton antiporter subunit C compare
MMP_RS01580 +0.2 1.3 PQQ-binding-like beta-propeller repeat protein compare
MMP_RS08860 +0.2 1.1 MinD/ParA family protein compare
MMP_RS01540 +0.2 0.8 DUF504 domain-containing protein compare
MMP_RS08670 +0.2 1.5 metallophosphoesterase compare
MMP_RS00185 +0.2 1.9 potassium channel protein compare
MMP_RS04270 +0.2 1.3 coenzyme F420 hydrogenase subunit alpha compare
MMP_RS00880 +0.2 1.4 ribosome assembly RNA-binding protein YhbY compare
MMP_RS05700 +0.2 1.7 TfuA-related McrA-glycine thioamidation protein compare
MMP_RS00540 +0.2 1.7 PLP-dependent aminotransferase family protein compare
MMP_RS03300 +0.2 0.4 TOBE domain-containing protein compare
MMP_RS08785 +0.2 0.4 RNA-protein complex protein Nop10 compare
MMP_RS06765 +0.2 1.1 flap endonuclease-1 compare
MMP_RS03910 +0.2 0.8 hypothetical protein compare
MMP_RS06060 +0.2 1.4 hypothetical protein compare
MMP_RS08000 +0.2 1.8 methyl coenzyme M reductase-arginine methyltransferase Mmp10 compare
MMP_RS07120 +0.2 1.7 coenzyme F420 hydrogenase subunit alpha compare
MMP_RS07910 +0.2 1.3 NAD(P)H-hydrate dehydratase compare
MMP_RS04265 +0.2 1.2 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS08265 +0.2 1.2 rubrerythrin compare
MMP_RS08340 +0.2 1.2 4Fe-4S binding protein compare
MMP_RS05830 +0.2 1.1 peptidyl-prolyl cis-trans isomerase compare
MMP_RS00080 +0.2 0.7 RecB-family nuclease compare
MMP_RS08535 +0.2 1.3 bis-aminopropyl spermidine synthase family protein compare
MMP_RS07560 +0.2 1.2 prefoldin subunit alpha compare
MMP_RS08995 +0.2 0.5 hypothetical protein compare
MMP_RS03790 +0.2 1.5 hypothetical protein compare
MMP_RS05355 +0.2 0.3 hypothetical protein compare
MMP_RS00655 +0.2 1.0 hypothetical protein compare
MMP_RS07855 +0.2 1.2 class I SAM-dependent methyltransferase compare
MMP_RS02455 +0.2 1.4 hypothetical protein compare
MMP_RS03535 +0.2 1.0 helix-turn-helix transcriptional regulator compare
MMP_RS05170 +0.2 1.2 lysine exporter LysO family protein compare
MMP_RS00760 +0.2 1.5 branched-chain-amino-acid transaminase compare
MMP_RS01115 +0.2 1.5 molybdopterin molybdotransferase MoeA compare
MMP_RS07800 +0.2 1.2 ATP-binding cassette domain-containing protein compare
MMP_RS04880 +0.2 1.5 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS08325 +0.2 1.5 hypothetical protein compare
MMP_RS03765 +0.2 1.3 CopG family ribbon-helix-helix protein compare
MMP_RS05990 +0.2 0.8 DsrE family protein compare
MMP_RS02825 +0.2 1.5 mechanosensitive ion channel family protein compare
MMP_RS07155 +0.2 1.2 MFS transporter compare
MMP_RS08260 +0.2 1.2 DUF99 family protein compare
MMP_RS06540 +0.2 0.8 3-methyl-2-oxobutanoate dehydrogenase subunit VorB compare
MMP_RS06970 +0.2 1.0 ribosomal protein S18-alanine N-acetyltransferase compare
MMP_RS06495 +0.2 0.5 YkgJ family cysteine cluster protein compare
MMP_RS07925 +0.2 0.8 haloacid dehalogenase compare
MMP_RS05530 +0.2 1.2 signal peptide peptidase SppA compare
MMP_RS08475 +0.2 1.0 ABC transporter permease compare
MMP_RS08130 +0.2 1.3 IGHMBP2 family helicase compare
MMP_RS07615 +0.2 0.9 energy-coupling factor ABC transporter permease compare
MMP_RS02725 +0.2 1.1 molybdate ABC transporter permease subunit compare
MMP_RS01275 +0.2 1.0 class III signal peptide-containing protein compare
MMP_RS00535 +0.2 0.7 TIGR00375 family protein compare
MMP_RS05825 +0.2 0.7 peptidyl-prolyl cis-trans isomerase compare
MMP_RS06290 +0.2 0.7 DNA repair and recombination protein RadA compare
MMP_RS00155 +0.2 1.0 heavy metal-binding domain-containing protein compare
MMP_RS08345 +0.2 1.3 4Fe-4S binding protein compare
MMP_RS06000 +0.2 1.0 divalent-cation tolerance protein CutA compare
MMP_RS08775 +0.2 1.1 methanogenesis marker 9 domain-containing protein compare
MMP_RS01630 +0.2 1.1 N-glycosylase/DNA lyase compare
MMP_RS02550 +0.2 0.8 helix-turn-helix transcriptional regulator compare
MMP_RS01155 +0.2 1.0 XRE family transcriptional regulator compare
MMP_RS01460 +0.2 0.9 hypothetical protein compare
MMP_RS06875 +0.2 0.7 FAD-dependent oxidoreductase compare
MMP_RS05275 +0.2 1.3 AI-2E family transporter compare
MMP_RS04445 +0.2 1.2 P-II family nitrogen regulator compare
MMP_RS00910 +0.2 1.1 2-phosphosulfolactate phosphatase compare
MMP_RS00530 +0.2 0.9 tRNA pseudouridine(54/55) synthase Pus10 compare
MMP_RS03210 +0.2 1.3 tRNA guanosine(15) transglycosylase TgtA compare
MMP_RS00955 +0.2 1.2 coenzyme gamma-F420-2:alpha-L-glutamate ligase compare
MMP_RS00240 +0.2 1.3 type II secretion system F family protein compare
MMP_RS05295 +0.2 1.2 minichromosome maintenance protein MCM compare
MMP_RS07100 +0.2 1.2 hypothetical protein compare
MMP_RS00285 +0.1 1.0 TIGR04013 family B12-binding domain/radical SAM domain-containing protein compare
MMP_RS09025 +0.1 0.3 hypothetical protein compare
MMP_RS03275 +0.1 1.0 TIGR00266 family protein compare
MMP_RS01550 +0.1 1.2 DUF1624 domain-containing protein compare
MMP_RS02295 +0.1 1.2 TatD family hydrolase compare
MMP_RS06655 +0.1 1.2 glycoside hydrolase family 15 protein compare
MMP_RS05950 +0.1 1.0 nickel-dependent hydrogenase large subunit compare
MMP_RS06520 +0.1 0.7 DUF1786 domain-containing protein compare
MMP_RS03860 +0.1 1.1 hypothetical protein compare
MMP_RS06990 +0.1 1.0 CatB-related O-acetyltransferase compare
MMP_RS05450 +0.1 0.9 CoB--CoM heterodisulfide reductase subunit C compare
MMP_RS02085 +0.1 1.0 inosine/xanthosine triphosphatase compare
MMP_RS07620 +0.1 0.7 energy-coupling factor ABC transporter substrate-binding protein compare
MMP_RS02495 +0.1 0.5 hypothetical protein compare
MMP_RS04030 +0.1 0.7 hypothetical protein compare
MMP_RS07860 +0.1 0.2 hypothetical protein compare
MMP_RS00085 +0.1 1.1 DNA cytosine methyltransferase compare
MMP_RS05460 +0.1 1.1 YcaO-related McrA-glycine thioamidation protein compare
MMP_RS02365 +0.1 1.1 nitrogen fixation compare
MMP_RS01090 +0.1 1.0 ABC transporter substrate-binding protein compare
MMP_RS06140 +0.1 0.4 radical SAM protein compare
MMP_RS00975 +0.1 1.1 HD domain-containing protein compare
MMP_RS01065 +0.1 1.1 alpha/beta hydrolase compare
MMP_RS03760 +0.1 1.1 hypothetical protein compare
MMP_RS03130 +0.1 0.9 hypothetical protein compare
MMP_RS06190 +0.1 1.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO compare
MMP_RS04530 +0.1 1.0 ABC transporter permease compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments

For nutrient t1 Sodium acetate across organisms