Experiment set4IT069 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Cholin acetate 19 mM

200 most important genes:

  gene name fitness t score description  
AO353_21625 -3.2 -2.2 Fe/S biogenesis protein NfuA compare
AO353_12500 -3.0 -2.1 shikimate kinase compare
AO353_00430 -2.8 -4.2 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_18540 -2.7 -2.6 pseudouridine synthase compare
AO353_22685 -2.7 -5.0 peroxidase compare
AO353_12115 -2.7 -3.5 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_16940 -2.4 -5.8 deoxycytidine triphosphate deaminase compare
AO353_05690 -2.3 -3.5 SsrA-binding protein compare
AO353_02595 -2.2 -4.3 cobalamin synthase compare
AO353_26045 -2.2 -2.8 hypothetical protein compare
AO353_27695 -2.2 -7.4 isocitrate dehydrogenase compare
AO353_07075 -2.2 -5.8 elongation factor Tu compare
AO353_11730 -2.1 -9.0 glutamate--cysteine ligase compare
AO353_04835 -2.1 -10.3 fusaric acid resistance protein compare
AO353_10670 -2.1 -7.4 shikimate dehydrogenase compare
AO353_13100 -2.0 -2.3 GTPase RsgA compare
AO353_04825 -1.9 -6.5 hypothetical protein compare
AO353_08110 -1.9 -5.6 glutathione synthetase compare
AO353_04840 -1.9 -9.1 RND transporter compare
AO353_04190 -1.8 -2.6 glycerol-3-phosphate dehydrogenase compare
AO353_24535 -1.8 -2.5 hypothetical protein compare
AO353_03590 -1.8 -3.7 crossover junction endodeoxyribonuclease RuvC compare
AO353_08115 -1.7 -5.7 energy transducer TonB compare
AO353_03580 -1.7 -3.4 ATP-dependent DNA helicase RuvB compare
AO353_06495 -1.7 -4.5 gamma-glutamyl phosphate reductase compare
AO353_27550 -1.6 -1.8 hypothetical protein compare
AO353_05625 -1.6 -1.8 transcription elongation factor GreA compare
AO353_03585 -1.6 -2.9 ATP-dependent DNA helicase RuvA compare
AO353_20185 -1.6 -5.3 DNA-binding protein compare
AO353_00825 -1.6 -4.0 porin compare
AO353_03615 -1.6 -2.5 cold-shock protein compare
AO353_20565 -1.6 -1.5 tRNA-Ala compare
AO353_06850 -1.6 -4.4 MFS transporter compare
AO353_14940 -1.6 -3.3 malate:quinone oxidoreductase compare
AO353_16805 -1.6 -4.9 recombinase RecA compare
AO353_02250 -1.6 -2.8 chorismate synthase compare
AO353_04830 -1.5 -4.9 required for acetate efflux, together with NodT, MFP and FUSC proteins (AO353_04840, AO353_04825, and AO353_04835) (from data) compare
AO353_21400 -1.5 -2.3 conjugal transfer protein TraR compare
AO353_15905 -1.5 -5.6 outer membrane protein assembly factor BamB compare
AO353_12105 -1.5 -5.8 peptidase S41 compare
AO353_11770 -1.5 -1.9 molecular chaperone Hsp33 compare
AO353_09000 -1.5 -4.6 argininosuccinate lyase compare
AO353_12420 -1.5 -3.2 predicted FeS cluster maintenance protein (from data) compare
AO353_09045 -1.5 -2.2 hypothetical protein compare
AO353_12345 -1.4 -1.9 twin-arginine protein translocation system subunit TatC compare
AO353_15410 -1.4 -2.4 hypothetical protein compare
AO353_07355 -1.4 -4.8 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_09240 -1.4 -2.7 acetylglutamate kinase compare
AO353_04175 -1.4 -4.1 glycerol uptake facilitator GlpF compare
AO353_20425 -1.4 -2.6 ArsC family transcriptional regulator compare
AO353_03795 -1.4 -3.7 fumarate hydratase compare
AO353_20170 -1.4 -4.0 trigger factor compare
AO353_07155 -1.4 -5.1 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_10320 -1.4 -2.0 hypothetical protein compare
AO353_14420 -1.3 -3.3 molecular chaperone DnaK compare
AO353_04520 -1.3 -4.7 elongation factor 4 compare
AO353_05130 -1.3 -1.7 anti-anti-sigma factor compare
AO353_04565 -1.3 -4.9 nucleoid-associated protein compare
AO353_07250 -1.3 -2.5 polyamine ABC transporter permease compare
AO353_20840 -1.3 -2.1 ribose pyranase compare
AO353_06045 -1.3 -5.4 exodeoxyribonuclease V subunit beta compare
AO353_18655 -1.3 -3.5 flagellar assembly protein FliT compare
AO353_06040 -1.2 -3.2 exodeoxyribonuclease V subunit alpha compare
AO353_26115 -1.2 -1.7 hypothetical protein compare
AO353_05125 -1.2 -4.1 BolA family transcriptional regulator compare
AO353_01595 -1.2 -1.8 Flp pilus assembly protein CpaB compare
AO353_08165 -1.2 -2.6 pyrroline-5-carboxylate reductase compare
AO353_02620 -1.2 -4.5 threonine-phosphate decarboxylase compare
AO353_28815 -1.2 -2.3 hypothetical protein compare
AO353_28425 -1.2 -2.9 TetR family transcriptional regulator compare
AO353_00660 -1.2 -2.3 transcriptional regulator compare
AO353_00355 -1.2 -2.1 transcriptional regulator compare
AO353_11185 -1.1 -7.8 channel protein TolC compare
AO353_10930 -1.1 -5.8 DNA polymerase I compare
AO353_19280 -1.1 -1.6 hypothetical protein compare
AO353_20510 -1.1 -1.6 amidase compare
AO353_17885 -1.1 -1.8 hypothetical protein compare
AO353_08685 -1.1 -5.6 N-acetylglutamate synthase compare
AO353_20175 -1.1 -2.5 ATP-dependent Clp protease proteolytic subunit compare
AO353_04105 -1.1 -5.5 argininosuccinate synthase compare
AO353_18780 -1.1 -4.6 cobyrinic acid a,c-diamide synthase compare
AO353_26165 -1.1 -3.0 hypothetical protein compare
AO353_17035 -1.1 -3.6 hypothetical protein compare
AO353_11180 -1.1 -9.2 large adhesive protein compare
AO353_26595 -1.1 -3.2 copper resistance protein CopD compare
AO353_13160 -1.0 -1.8 membrane protease HflC compare
AO353_27720 -1.0 -3.4 cupin compare
AO353_05420 -1.0 -1.4 peptide chain release factor 3 compare
AO353_02000 -1.0 -2.3 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_21430 -1.0 -2.2 hypothetical protein compare
AO353_10985 -1.0 -1.9 hypothetical protein compare
AO353_02070 -1.0 -3.4 prephenate dehydratase compare
AO353_01995 -1.0 -6.8 hypothetical protein compare
AO353_14370 -1.0 -4.2 glucose-6-phosphate isomerase compare
AO353_18560 -1.0 -2.1 class I peptide chain release factor compare
AO353_13225 -1.0 -2.5 50S ribosomal protein L9 compare
AO353_18425 -1.0 -3.0 hypothetical protein compare
AO353_00460 -1.0 -2.1 TetR family transcriptional regulator compare
AO353_09690 -1.0 -1.8 hypothetical protein compare
AO353_16195 -1.0 -1.7 DNA mismatch repair protein MutT compare
AO353_11195 -1.0 -7.3 hemolysin secretion protein D compare
AO353_06050 -1.0 -4.3 exodeoxyribonuclease V subunit gamma compare
AO353_15250 -1.0 -2.3 cytochrome B compare
AO353_15260 -1.0 -3.9 stringent starvation protein A compare
AO353_03815 -0.9 -1.4 heme utilization protein compare
AO353_15725 -0.9 -2.9 hypothetical protein compare
AO353_06415 -0.9 -3.1 hypothetical protein compare
AO353_01975 -0.9 -4.5 glycosyl transferase compare
AO353_01410 -0.9 -2.4 ribonuclease E compare
AO353_00655 -0.9 -5.2 coproporphyrinogen III oxidase compare
AO353_24425 -0.9 -2.2 amino acid ABC transporter permease compare
AO353_04365 -0.9 -2.9 recombinase XerD compare
AO353_02235 -0.9 -3.6 acireductone dioxygenase compare
AO353_11190 -0.9 -6.3 ABC transporter compare
AO353_01970 -0.9 -5.5 hypothetical protein compare
AO353_11170 -0.9 -5.8 hypothetical protein compare
AO353_05145 -0.9 -3.6 ABC transporter permease compare
AO353_13200 -0.9 -5.7 exoribonuclease R compare
AO353_13580 -0.9 -2.4 copper resistance protein CopZ compare
AO353_24340 -0.9 -1.3 TetR family transcriptional regulator compare
AO353_09235 -0.9 -4.4 phosphoglucomutase compare
AO353_05550 -0.9 -3.9 pseudouridine synthase compare
AO353_09315 -0.9 -4.6 LysR family transcriptional regulator compare
AO353_03670 -0.9 -2.6 ornithine acetyltransferase compare
AO353_02710 -0.9 -5.6 (p)ppGpp synthetase compare
AO353_27650 -0.9 -2.6 cell division protein FtsK compare
AO353_03420 -0.9 -2.7 phosphogluconate dehydratase compare
AO353_05535 -0.9 -1.9 tRNA-Thr compare
AO353_28110 -0.9 -2.9 TetR family transcriptional regulator compare
AO353_22800 -0.8 -1.9 sulfite reductase compare
AO353_05240 -0.8 -1.8 rod shape-determining protein MreD compare
AO353_02720 -0.8 -3.4 cysteine synthase compare
AO353_11915 -0.8 -4.4 agmatine deiminase compare
AO353_23440 -0.8 -1.1 hypothetical protein compare
AO353_02570 -0.8 -2.2 hypothetical protein compare
AO353_12015 -0.8 -1.5 antitoxin compare
AO353_22955 -0.8 -1.9 tRNA hydroxylase compare
AO353_03370 -0.8 -2.6 aldose epimerase compare
AO353_07830 -0.8 -3.3 dimethylmenaquinone methyltransferase compare
AO353_26080 -0.8 -2.2 hypothetical protein compare
AO353_13715 -0.8 -2.0 translation initiation factor Sui1 compare
AO353_07445 -0.8 -1.3 pyrroloquinoline quinone biosynthesis protein PqqD compare
AO353_20785 -0.8 -3.0 carbon storage regulator CsrA compare
AO353_14485 -0.8 -1.4 pseudouridine synthase compare
AO353_02020 -0.8 -2.7 hypothetical protein compare
AO353_24130 -0.8 -1.9 hypothetical protein compare
AO353_22700 -0.8 -1.5 LexA family transcriptional regulator compare
AO353_04355 -0.8 -1.3 homoserine dehydrogenase compare
AO353_11850 -0.8 -2.5 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_18305 -0.8 -2.5 RNA helicase compare
AO353_09040 -0.8 -0.9 diaminopimelate epimerase compare
AO353_13245 -0.8 -4.2 hypothetical protein compare
AO353_08095 -0.8 -3.8 protein PilI compare
AO353_27685 -0.8 -2.7 cold-shock protein compare
AO353_11945 -0.8 -0.8 4-oxalocrotonate tautomerase compare
AO353_15885 -0.8 -2.6 Cro/Cl family transcriptional regulator compare
AO353_29145 -0.8 -2.7 HxlR family transcriptional regulator compare
AO353_10065 -0.8 -4.3 hypothetical protein compare
AO353_20245 -0.8 -2.5 LysR family transcriptional regulator compare
AO353_05135 -0.8 -4.2 toluene tolerance protein compare
AO353_00670 -0.8 -2.8 acyl-CoA dehydrogenase compare
AO353_27995 -0.8 -2.5 RpiR family transcriptional regulator compare
AO353_09560 -0.7 -0.8 type VI secretion protein compare
AO353_01725 -0.7 -1.6 phosphohistidine phosphatase compare
AO353_14030 -0.7 -4.9 ABC transporter ATP-binding protein compare
AO353_02590 -0.7 -1.8 MarR family transcriptional regulator compare
AO353_15465 -0.7 -2.8 cytochrome C oxidase compare
AO353_20835 -0.7 -2.4 Ribokinase (EC 2.7.1.15) (from data) compare
AO353_02060 -0.7 -1.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_12765 -0.7 -2.0 transcriptional regulator compare
AO353_17640 -0.7 -1.1 serine peptidase compare
AO353_05150 -0.7 -2.5 ABC transporter ATP-binding protein compare
AO353_10070 -0.7 -4.4 cell wall assembly protein compare
AO353_26830 -0.7 -2.3 histidine kinase compare
AO353_10915 -0.7 -4.9 ABC transporter substrate-binding protein compare
AO353_20865 -0.7 -1.4 cold-shock protein compare
AO353_04845 -0.7 -4.9 LysR family transcriptional regulator conserved
AO353_00260 -0.7 -1.5 hypothetical protein compare
AO353_07315 -0.7 -1.5 rRNA methyltransferase compare
AO353_12395 -0.7 -2.0 poly(3-hydroxyalkanoate) granule-associated protein PhaF compare
AO353_26900 -0.7 -1.9 glycerate kinase compare
AO353_16530 -0.7 -1.1 ribonuclease HII compare
AO353_03520 -0.7 -1.7 hypothetical protein compare
AO353_26070 -0.7 -1.0 hypothetical protein compare
AO353_02640 -0.7 -0.8 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_22415 -0.7 -2.2 alcohol dehydrogenase compare
AO353_17165 -0.7 -1.7 ATP-dependent helicase compare
AO353_00695 -0.7 -4.1 diguanylate cyclase compare
AO353_02220 -0.7 -1.1 hypothetical protein compare
AO353_16675 -0.7 -2.5 phage tail protein compare
AO353_13050 -0.7 -2.4 DNA topoisomerase IV compare
AO353_27925 -0.7 -1.4 hypothetical protein compare
AO353_28475 -0.7 -2.6 NmrA family transcriptional regulator compare
AO353_09905 -0.7 -4.2 phosphate-binding protein compare
AO353_09265 -0.7 -1.5 hypothetical protein compare
AO353_04315 -0.7 -2.3 oxidoreductase compare
AO353_28200 -0.7 -1.8 ribosomal protein S3AE compare
AO353_07290 -0.7 -4.0 mannose-1-phosphate guanylyltransferase compare
AO353_22645 -0.7 -1.3 hypothetical protein compare
AO353_19050 -0.7 -2.3 5'-nucleotidase compare


Specific Phenotypes

For 11 genes in this experiment

For stress Cholin acetate in Pseudomonas fluorescens FW300-N2E3

For stress Cholin acetate across organisms