Experiment set4IT069 for Pseudomonas fluorescens FW300-N1B4

Compare to:

L-Glutamic acid monopotassium salt monohydrate carbon source

200 most detrimental genes:

  gene name fitness t score description  
Pf1N1B4_5109 +1.4 2.7 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases compare
Pf1N1B4_4611 +1.2 2.3 GlpG protein (membrane protein of glp regulon) compare
Pf1N1B4_5056 +1.1 3.4 Uncharacterized glutathione S-transferase-like protein compare
Pf1N1B4_3785 +1.1 1.9 FOG: Ankyrin repeat compare
Pf1N1B4_4648 +1.0 2.1 transcriptional regulator, MerR family compare
Pf1N1B4_5447 +1.0 2.3 hypothetical protein compare
Pf1N1B4_77 +1.0 3.1 FIG00956064: hypothetical protein compare
Pf1N1B4_5803 +1.0 3.3 Catechol 1,2-dioxygenase (EC 1.13.11.1) compare
Pf1N1B4_761 +1.0 2.0 FIG00954879: hypothetical protein compare
Pf1N1B4_5820 +1.0 2.4 Transcriptional regulator, Cro/CI family compare
Pf1N1B4_688 +1.0 1.7 FIG00955483: hypothetical protein compare
Pf1N1B4_1370 +1.0 1.4 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf1N1B4_218 +1.0 4.9 Periplasmic binding protein compare
Pf1N1B4_932 +1.0 1.5 FIG00963370: hypothetical protein compare
Pf1N1B4_2102 +1.0 1.7 hypothetical protein compare
Pf1N1B4_5435 +0.9 2.0 hypothetical protein compare
Pf1N1B4_3191 +0.9 1.5 FIG00953505: hypothetical protein compare
Pf1N1B4_4929 +0.9 1.9 Opine oxidase subunit B compare
Pf1N1B4_6041 +0.9 1.5 Carbon storage regulator compare
Pf1N1B4_1017 +0.9 3.7 FIG00957554: hypothetical protein compare
Pf1N1B4_5779 +0.9 1.3 Nitrous oxide reductase maturation protein NosF (ATPase) compare
Pf1N1B4_1892 +0.9 2.9 ABC transporter ATP-binding protein USSDB6B compare
Pf1N1B4_4831 +0.9 1.7 Outer membrane protein assembly factor YaeT precursor compare
Pf1N1B4_1781 +0.9 1.8 hypothetical protein compare
Pf1N1B4_4343 +0.9 1.8 hypothetical protein compare
Pf1N1B4_5668 +0.9 1.6 Peptidase, U7 family compare
Pf1N1B4_1721 +0.9 2.0 DNA-binding heavy metal response regulator compare
Pf1N1B4_5340 +0.9 2.1 hypothetical protein compare
Pf1N1B4_1388 +0.9 2.4 Azurin compare
Pf1N1B4_3501 +0.9 4.3 BarA sensory histidine kinase (= VarS = GacS) compare
Pf1N1B4_5370 +0.9 1.6 hypothetical protein compare
Pf1N1B4_3981 +0.9 1.8 Predicted carboxypeptidase compare
Pf1N1B4_2925 +0.9 2.3 hypothetical protein compare
Pf1N1B4_4539 +0.9 1.8 Uncharacterized protein homologous to Paeru. PA2364 compare
Pf1N1B4_54 +0.9 2.8 Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91) compare
Pf1N1B4_3587 +0.9 2.5 N-Acetylneuraminate cytidylyltransferase (EC 2.7.7.43) compare
Pf1N1B4_5146 +0.8 1.3 Chromosome initiation inhibitor compare
Pf1N1B4_5871 +0.8 1.9 FIG00963848: hypothetical protein compare
Pf1N1B4_5460 +0.8 1.7 TolA protein compare
Pf1N1B4_620 +0.8 2.4 Glycine cleavage system H protein compare
Pf1N1B4_749 +0.8 1.5 hypothetical protein compare
Pf1N1B4_5292 +0.8 1.8 hypothetical protein compare
Pf1N1B4_152 +0.8 2.2 ABC transporter, permease protein compare
Pf1N1B4_3485 +0.8 1.5 hypothetical protein compare
Pf1N1B4_5284 +0.8 1.8 hypothetical protein compare
Pf1N1B4_5439 +0.8 1.9 hypothetical protein compare
Pf1N1B4_1128 +0.8 1.9 hypothetical protein compare
Pf1N1B4_2736 +0.8 1.6 ATP-dependent RNA helicase PA3950 compare
Pf1N1B4_4713 +0.8 2.5 Xanthine permease compare
Pf1N1B4_2106 +0.8 2.0 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_4076 +0.8 1.6 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf1N1B4_2719 +0.8 6.1 Sensor histidine kinase compare
Pf1N1B4_4521 +0.7 2.0 Probable transmembrane protein compare
Pf1N1B4_4590 +0.7 1.8 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf1N1B4_138 +0.7 1.4 Putative dipeptidase, pyoverdin biosynthesis PvdM compare
Pf1N1B4_4479 +0.7 2.3 Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) compare
Pf1N1B4_5708 +0.7 2.0 Transcriptional regulator, TetR family compare
Pf1N1B4_1679 +0.7 1.2 Membrane-fusion protein compare
Pf1N1B4_5073 +0.7 1.9 Hydroxypyruvate isomerase (EC 5.3.1.22) compare
Pf1N1B4_3931 +0.7 3.4 Auxin-binding protein, putative compare
Pf1N1B4_4582 +0.7 1.3 hypothetical protein compare
Pf1N1B4_387 +0.7 1.7 hypothetical protein compare
Pf1N1B4_4325 +0.7 2.1 Agmatine deiminase (EC 3.5.3.12) compare
Pf1N1B4_197 +0.7 1.3 FIG139991: Putative thiamine pyrophosphate-requiring enzyme compare
Pf1N1B4_69 +0.7 1.4 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_4096 +0.7 1.8 Nucleoside-diphosphate-sugar epimerases compare
Pf1N1B4_133 +0.7 1.8 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis compare
Pf1N1B4_4393 +0.7 1.0 Ferredoxin reductase compare
Pf1N1B4_198 +0.7 1.8 FIG137877: Hypothetical protein in pyoverdin gene cluster compare
Pf1N1B4_4866 +0.7 1.4 hypothetical protein compare
Pf1N1B4_3918 +0.7 1.8 Thiamin biosynthesis lipoprotein ApbE compare
Pf1N1B4_700 +0.7 2.9 LysR-family transcriptional regulator clustered with PA0057 compare
Pf1N1B4_3278 +0.7 1.9 putative exported protein compare
Pf1N1B4_3783 +0.7 1.9 FIG00958237: hypothetical protein compare
Pf1N1B4_4460 +0.7 1.3 Cytochrome b561 compare
Pf1N1B4_4402 +0.7 1.4 SoxH protein, homolog compare
Pf1N1B4_31 +0.7 1.8 Probable Co/Zn/Cd efflux system membrane fusion protein compare
Pf1N1B4_4826 +0.7 1.1 glutamine synthetase family protein compare
Pf1N1B4_5817 +0.7 1.2 Decarboxylase family protein compare
Pf1N1B4_5512 +0.7 1.1 hypothetical protein compare
Pf1N1B4_16 +0.6 1.8 Cys regulon transcriptional activator CysB compare
Pf1N1B4_2642 +0.6 1.5 Methionine ABC transporter ATP-binding protein compare
Pf1N1B4_4024 +0.6 1.5 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_2791 +0.6 1.2 Putative inner membrane protein (Fragment) compare
Pf1N1B4_4027 +0.6 1.0 hypothetical protein compare
Pf1N1B4_4771 +0.6 1.7 Probable transmembrane protein compare
Pf1N1B4_1194 +0.6 1.1 hypothetical protein compare
Pf1N1B4_4673 +0.6 1.5 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf1N1B4_1419 +0.6 2.4 putative membrane protein compare
Pf1N1B4_3605 +0.6 1.1 Flagellar motor switch protein FliG compare
Pf1N1B4_3549 +0.6 1.2 YciL protein compare
Pf1N1B4_541 +0.6 1.9 hypothetical protein compare
Pf1N1B4_2534 +0.6 1.5 DnaJ-like protein DjlA compare
Pf1N1B4_114 +0.6 1.5 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf1N1B4_3612 +0.6 1.6 Flagellar hook-length control protein FliK compare
Pf1N1B4_5831 +0.6 2.1 SAM-dependent methyltransferases compare
Pf1N1B4_699 +0.6 2.9 Metallo-beta-lactamase superfamily protein PA0057 compare
Pf1N1B4_2318 +0.6 2.4 FIG229276: Transcriptional regulator, AraC family compare
Pf1N1B4_3467 +0.6 1.3 Flagellar biosynthesis protein FlgN compare
Pf1N1B4_2413 +0.6 1.7 Permeases of the major facilitator superfamily compare
Pf1N1B4_4553 +0.6 1.6 FIG00959354: hypothetical protein compare
Pf1N1B4_4721 +0.6 1.7 Nuclease inhibitor compare
Pf1N1B4_1610 +0.6 2.0 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf1N1B4_43 +0.6 2.6 hypothetical protein compare
Pf1N1B4_1528 +0.6 1.4 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_446 +0.6 1.8 Thymidylate kinase (EC 2.7.4.9) compare
Pf1N1B4_3399 +0.6 2.0 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_1993 +0.6 0.9 C4-type zinc finger protein, DksA/TraR family compare
Pf1N1B4_3865 +0.6 1.2 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Pf1N1B4_4753 +0.6 2.4 Soluble aldose sugar dehydrogenase, PQQ-dependent (EC 1.1.5.-) compare
Pf1N1B4_2322 +0.6 1.3 FIG015547: peptidase, M16 family compare
Pf1N1B4_3983 +0.6 1.7 cI compare
Pf1N1B4_1756 +0.6 1.4 Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases compare
Pf1N1B4_4311 +0.6 2.6 Phosphatidylcholine synthase (EC 2.7.8.24) compare
Pf1N1B4_119 +0.6 2.7 Putative haemolysin/cytolysin secreted via TPS pathway compare
Pf1N1B4_3353 +0.6 2.0 putative cytoplasmic protein compare
Pf1N1B4_3206 +0.6 1.4 Short chain dehydrogenase compare
Pf1N1B4_5138 +0.6 1.6 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf1N1B4_4438 +0.6 1.1 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf1N1B4_3129 +0.6 1.0 Prophage baseplate assembly protein V compare
Pf1N1B4_3394 +0.6 2.2 Aquaporin Z compare
Pf1N1B4_3275 +0.6 1.9 L-lysine permease compare
Pf1N1B4_1336 +0.6 1.1 Putative multicopper oxidases compare
Pf1N1B4_4333 +0.6 1.0 hypothetical protein compare
Pf1N1B4_675 +0.6 1.3 hypothetical protein compare
Pf1N1B4_3130 +0.6 1.1 Bacteriophage protein GP46 compare
Pf1N1B4_2411 +0.6 1.2 FIG00953568: hypothetical protein compare
Pf1N1B4_1312 +0.6 1.8 hypothetical protein compare
Pf1N1B4_5269 +0.6 1.4 hypothetical protein compare
Pf1N1B4_2454 +0.6 2.9 Serine hydroxymethyltransferase (EC 2.1.2.1) (from data) compare
Pf1N1B4_4749 +0.6 1.9 ABC transporter ATP-binding protein uup compare
Pf1N1B4_3489 +0.6 2.0 Protein sprT compare
Pf1N1B4_4915 +0.6 3.1 Outer membrane porin, OprD family compare
Pf1N1B4_563 +0.6 1.5 RNA polymerase sigma-70 factor compare
Pf1N1B4_5378 +0.6 1.7 Phage protein compare
Pf1N1B4_1680 +0.6 2.8 Probable membrane-fusion protein compare
Pf1N1B4_3517 +0.6 2.3 hypothetical protein compare
Pf1N1B4_2355 +0.6 2.0 type IV pili signal transduction protein PilI compare
Pf1N1B4_3050 +0.6 2.1 FIG00958830: hypothetical protein compare
Pf1N1B4_4106 +0.6 1.3 Mesenchymal stem cell protein DSCD75 compare
Pf1N1B4_609 +0.6 1.4 FIG039061: hypothetical protein related to heme utilization compare
Pf1N1B4_4974 +0.6 1.2 Protease subunit of ATP-dependent Clp proteases compare
Pf1N1B4_3959 +0.6 1.7 2-aminoethylphosphonate:pyruvate aminotransferase (EC 2.6.1.37) compare
Pf1N1B4_1359 +0.6 2.5 Putative heat shock protein YegD compare
Pf1N1B4_4603 +0.6 0.9 hypothetical protein compare
Pf1N1B4_4906 +0.6 2.3 Lipase (EC 3.1.1.3) compare
Pf1N1B4_3526 +0.6 1.3 Glutathione S-transferase (EC 2.5.1.18) compare
Pf1N1B4_2415 +0.6 2.0 TldD family protein, Beta/Gamma-proteobacterial subgroup compare
Pf1N1B4_3626 +0.6 2.2 RNA polymerase sigma factor for flagellar operon compare
Pf1N1B4_201 +0.6 1.1 ABC transporter in pyoverdin gene cluster, ATP-binding component compare
Pf1N1B4_1110 +0.5 2.4 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) (from data) compare
Pf1N1B4_1189 +0.5 2.2 Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG compare
Pf1N1B4_1348 +0.5 1.3 Urease accessory protein UreD compare
Pf1N1B4_3909 +0.5 0.9 Cell division inhibitor-related protein compare
Pf1N1B4_3516 +0.5 3.8 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins compare
Pf1N1B4_5112 +0.5 1.1 sucrose ABC transporter, substrate-binding component (from data) compare
Pf1N1B4_4571 +0.5 1.3 ADA regulatory protein / Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf1N1B4_3594 +0.5 1.3 Flagellin protein FlaA compare
Pf1N1B4_739 +0.5 1.7 Endonuclease III (EC 4.2.99.18) compare
Pf1N1B4_2975 +0.5 0.9 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) compare
Pf1N1B4_4822 +0.5 1.1 Paraquat-inducible protein A compare
Pf1N1B4_3787 +0.5 1.4 FIG00960829: hypothetical protein compare
Pf1N1B4_2635 +0.5 1.1 hypothetical protein compare
Pf1N1B4_5409 +0.5 2.2 hypothetical protein compare
Pf1N1B4_2368 +0.5 1.8 Malonate transporter, MadL subunit compare
Pf1N1B4_627 +0.5 1.4 hypothetical protein compare
Pf1N1B4_4542 +0.5 1.7 IcmF-related protein compare
Pf1N1B4_2357 +0.5 3.2 type IV pilus biogenesis protein PilJ compare
Pf1N1B4_5561 +0.5 1.6 hypothetical protein compare
Pf1N1B4_2774 +0.5 1.4 hypothetical protein compare
Pf1N1B4_764 +0.5 2.0 Uncharacterized isomerase yddE, PhzC-PhzF family compare
Pf1N1B4_882 +0.5 1.2 carbonic anhydrase, family 3 compare
Pf1N1B4_5258 +0.5 1.8 hypothetical protein compare
Pf1N1B4_2210 +0.5 1.2 Glutamate transport ATP-binding protein compare
Pf1N1B4_3093 +0.5 1.1 Outer membrane protein H precursor compare
Pf1N1B4_2622 +0.5 1.9 FIG006163: hypothetical protein compare
Pf1N1B4_1974 +0.5 1.3 L-lysine permease compare
Pf1N1B4_769 +0.5 2.6 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_3920 +0.5 1.2 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) compare
Pf1N1B4_4357 +0.5 1.1 Putrescine utilization regulator compare
Pf1N1B4_4259 +0.5 1.6 hypothetical protein compare
Pf1N1B4_5629 +0.5 1.9 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf1N1B4_1460 +0.5 3.5 Lipid A core - O-antigen ligase and related enzymes compare
Pf1N1B4_3514 +0.5 3.8 Sensor histidine kinase/response regulator compare
Pf1N1B4_2442 +0.5 1.1 Electron transfer flavoprotein, beta subunit compare
Pf1N1B4_4894 +0.5 1.4 Nucleoside-diphosphate-sugar epimerases compare
Pf1N1B4_5823 +0.5 0.8 Na(+) H(+) antiporter subunit C compare
Pf1N1B4_5736 +0.5 1.4 Nitrate/nitrite transporter compare
Pf1N1B4_2429 +0.5 2.3 Carnitine 3-dehydrogenase (EC 1.1.1.108) (from data) compare
Pf1N1B4_338 +0.5 1.3 Alpha-L-Rha alpha-1,3-L-rhamnosyltransferase (EC 2.4.1.-) compare
Pf1N1B4_4812 +0.5 1.3 Site-specific recombinase, phage integrase family compare
Pf1N1B4_4836 +0.5 1.5 COG2879, Hypothetical small protein yjiX compare
Pf1N1B4_5833 +0.5 0.9 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) compare
Pf1N1B4_1118 +0.5 1.1 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_2247 +0.5 1.0 FMN reductase (EC 1.5.1.29) compare
Pf1N1B4_3446 +0.5 0.8 Putative GTPases (G3E family) compare
Pf1N1B4_4865 +0.5 2.1 Multidrug efflux membrane fusion protein MexE compare
Pf1N1B4_4960 +0.5 1.1 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf1N1B4_4650 +0.5 1.7 Aspartate racemase (EC 5.1.1.13) compare
Pf1N1B4_903 +0.5 2.3 Ribosomal RNA large subunit methyltransferase F (EC 2.1.1.51) compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source L-Glutamic acid monopotassium salt monohydrate in Pseudomonas fluorescens FW300-N1B4

For carbon source L-Glutamic acid monopotassium salt monohydrate across organisms