Experiment set4IT069 for Methanococcus maripaludis S2

Compare to:

Formate deepwell casamino acid FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS06685 -4.3 -19.3 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS06680 -4.0 -12.6 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS06700 -3.9 -18.3 hypothetical protein compare
MMP_RS07345 -3.8 -11.4 glycine synthesis protein GlyXL (from data) compare
MMP_RS06345 -3.8 -15.7 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS06715 -3.7 -23.8 cache domain-containing protein compare
MMP_RS01005 -3.7 -3.0 riboflavin synthase compare
MMP_RS03450 -3.6 -3.9 glycine synthesis protein GlyXS (from data) compare
MMP_RS05500 -3.6 -14.9 2-isopropylmalate synthase compare
MMP_RS07845 -3.5 -5.7 LL-diaminopimelate aminotransferase compare
MMP_RS05550 -3.5 -1.5 cation:proton antiporter compare
MMP_RS05515 -3.4 -10.7 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS06720 -3.3 -13.7 response regulator transcription factor compare
MMP_RS06975 -3.3 -3.2 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS03015 -3.3 -12.8 GTP 3' 8-cyclase MoaA compare
MMP_RS06705 -3.3 -10.2 formate/nitrite transporter family protein compare
MMP_RS01455 -3.3 -14.8 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS08635 -3.3 -3.8 UbiA family prenyltransferase compare
MMP_RS01175 -3.3 -10.2 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS06350 -3.2 -9.8 HesA/MoeB/ThiF family protein compare
MMP_RS00295 -3.2 -5.1 gamma carbonic anhydrase family protein compare
MMP_RS07555 -3.2 -1.7 monovalent cation/H+ antiporter subunit E compare
MMP_RS01545 -3.2 -2.5 CBS domain-containing protein compare
MMP_RS08745 -3.2 -8.4 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS06730 -3.1 -5.0 phosphopantothenate/pantothenate synthetase compare
MMP_RS06355 -3.1 -4.7 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS08460 -3.0 -3.8 proteasome-activating nucleotidase compare
MMP_RS05090 -2.9 -12.5 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS07735 -2.9 -1.5 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS03640 -2.9 -7.4 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS05095 -2.9 -10.3 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS07380 -2.8 -4.1 transcription elongation factor Spt5 compare
MMP_RS06270 -2.8 -10.4 TIGR00300 family protein compare
MMP_RS04620 -2.8 -13.7 cobalt transporter CbiM compare
MMP_RS05070 -2.8 -9.9 4Fe-4S dicluster domain-containing protein compare
MMP_RS01020 -2.8 -2.2 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS05085 -2.7 -14.1 AAA family ATPase compare
MMP_RS05060 -2.7 -19.6 AAA family ATPase compare
MMP_RS07635 -2.7 -10.2 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS05100 -2.7 -20.2 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMP_RS06375 -2.7 -7.3 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS07365 -2.7 -15.0 2-phosphoglycerate kinase compare
MMP_RS05265 -2.7 -4.6 2-isopropylmalate synthase compare
MMP_RS05425 -2.7 -9.1 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS00290 -2.7 -10.0 hypothetical protein compare
MMP_RS04615 -2.6 -7.0 PDGLE domain-containing protein compare
MMP_RS07605 -2.6 -6.2 diadenylate cyclase compare
MMP_RS04605 -2.6 -10.9 cobalt ECF transporter T component CbiQ compare
MMP_RS07545 -2.6 -2.4 HTH domain-containing protein compare
MMP_RS05075 -2.6 -18.3 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMP_RS05930 -2.6 -5.6 3-isopropylmalate dehydratase large subunit compare
MMP_RS07445 -2.6 -9.9 helix-turn-helix domain-containing protein compare
MMP_RS06625 -2.6 -4.5 DNA primase compare
MMP_RS03315 -2.5 -2.0 ferrous iron transport protein A compare
MMP_RS04215 -2.5 -14.4 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS07730 -2.5 -3.9 pyruvate synthase subunit beta compare
MMP_RS07005 -2.5 -1.5 4Fe-4S binding protein compare
MMP_RS06340 -2.5 -11.4 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS01830 -2.5 -3.9 tRNA-Val compare
MMP_RS05055 -2.4 -15.6 DUF166 domain-containing protein compare
MMP_RS03435 -2.4 -2.6 ketol-acid reductoisomerase compare
MMP_RS05080 -2.4 -12.8 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS03035 -2.4 -4.4 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS01380 -2.3 -7.4 PHP domain-containing protein compare
MMP_RS01500 -2.3 -4.9 CBS domain-containing protein compare
MMP_RS06895 -2.2 -2.6 selenocysteine-specific translation elongation factor compare
MMP_RS09020 -2.2 -3.2 hypothetical protein compare
MMP_RS01700 -2.2 -2.2 dihydroxy-acid dehydratase compare
MMP_RS02900 -2.2 -1.4 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS02010 -2.2 -12.9 PHP domain-containing protein compare
MMP_RS04585 -2.2 -11.4 AIR synthase related protein compare
MMP_RS05065 -2.1 -6.0 CooT family nickel-binding protein compare
MMP_RS05555 -2.1 -2.4 DUF4040 domain-containing protein compare
MMP_RS07630 -2.1 -2.5 ATP-binding cassette domain-containing protein compare
MMP_RS04500 -2.1 -15.6 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS01265 -2.0 -3.5 hypothetical protein compare
MMP_RS02340 -2.0 -2.3 DNA-directed RNA polymerase subunit E'' compare
MMP_RS02195 -2.0 -6.6 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS06370 -2.0 -5.5 biotin synthase BioB compare
MMP_RS06630 -2.0 -2.2 UPF0058 family protein compare
MMP_RS03025 -2.0 -8.2 molybdenum cofactor guanylyltransferase compare
MMP_RS08330 -2.0 -6.6 NADH-quinone oxidoreductase subunit H compare
MMP_RS08105 -2.0 -9.7 6-carboxyhexanoate--CoA ligase compare
MMP_RS08100 -2.0 -7.1 8-amino-7-oxononanoate synthase compare
MMP_RS07645 -2.0 -8.1 aldehyde dehydrogenase family protein compare
MMP_RS08095 -1.9 -10.7 dethiobiotin synthase compare
MMP_RS05920 -1.9 -1.2 50S ribosomal protein L37e compare
MMP_RS05875 -1.9 -4.1 hydroxyethylthiazole kinase compare
MMP_RS08240 -1.9 -10.7 methanogenesis marker 16 metalloprotein compare
MMP_RS02240 -1.9 -4.7 methanogenesis marker 7 protein compare
MMP_RS02280 -1.9 -1.7 DUF211 domain-containing protein compare
MMP_RS06930 -1.9 -11.9 MBL fold metallo-hydrolase compare
MMP_RS07185 -1.9 -12.4 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS08820 -1.8 -6.4 hypothetical protein compare
MMP_RS08645 -1.8 -8.5 UPF0179 family protein compare
MMP_RS05765 -1.8 -9.3 M42 family metallopeptidase compare
MMP_RS00695 -1.8 -1.7 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS06295 -1.8 -7.8 methanogenesis marker 14 protein compare
MMP_RS07525 -1.8 -9.1 4Fe-4S binding protein compare
MMP_RS00685 -1.8 -5.9 2-phospho-L-lactate guanylyltransferase compare
MMP_RS01385 -1.8 -1.2 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS03600 -1.7 -2.7 triose-phosphate isomerase compare
MMP_RS06400 -1.7 -2.7 4Fe-4S binding protein compare
MMP_RS06315 -1.7 -2.1 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS06105 -1.7 -9.5 hydrogenase maturation peptidase HycI compare
MMP_RS08790 -1.7 -3.4 translation initiation factor IF-2 subunit alpha compare
MMP_RS00515 -1.7 -1.4 DUF655 domain-containing protein compare
MMP_RS07195 -1.7 -11.1 M20 family metallo-hydrolase compare
MMP_RS01985 -1.7 -6.6 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS04890 -1.7 -1.5 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS03420 -1.7 -2.9 acetolactate synthase small subunit compare
MMP_RS06285 -1.7 -4.5 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS04780 -1.7 -3.7 ribonuclease P compare
MMP_RS08715 -1.6 -2.7 formylmethanofuran dehydrogenase subunit B compare
MMP_RS02875 -1.6 -11.0 chorismate pyruvate-lyase family protein compare
MMP_RS04685 -1.6 -5.5 DUF126 domain-containing protein compare
MMP_RS06020 -1.5 -4.8 archaeoflavoprotein AfpA compare
MMP_RS01225 -1.5 -6.6 DUF5379 domain-containing protein compare
MMP_RS06120 -1.5 -3.6 UPF0147 family protein compare
MMP_RS01610 -1.5 -3.7 hypothetical protein compare
MMP_RS07575 -1.5 -4.0 RNA ligase partner protein compare
MMP_RS07710 -1.5 -9.2 cell division protein FtsZ compare
MMP_RS00110 -1.5 -4.2 hypothetical protein compare
MMP_RS02170 -1.4 -7.6 CBS domain-containing protein compare
MMP_RS06925 -1.4 -2.5 ribonuclease VapC4 compare
MMP_RS01755 -1.4 -1.7 DUF2097 domain-containing protein compare
MMP_RS02135 -1.4 -4.6 DUF5612 domain-containing protein compare
MMP_RS02355 -1.4 -3.4 30S ribosomal protein S27ae compare
MMP_RS00895 -1.4 -4.8 hypothetical protein compare
MMP_RS05540 -1.4 -3.5 hypothetical protein compare
MMP_RS00300 -1.4 -1.1 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS05850 -1.4 -5.0 Ldh family oxidoreductase compare
MMP_RS04790 -1.4 -10.6 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS01325 -1.3 -2.4 dihydroneopterin aldolase family protein compare
MMP_RS05845 -1.3 -2.4 tRNA-intron lyase compare
MMP_RS01220 -1.3 -6.3 hypothetical protein compare
MMP_RS02800 -1.3 -5.5 nucleotidyltransferase domain-containing protein compare
MMP_RS07720 -1.3 -9.1 4Fe-4S binding protein compare
MMP_RS00115 -1.3 -8.5 radical SAM protein compare
MMP_RS07200 -1.2 -7.0 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS05430 -1.2 -4.0 TIGR00288 family NYN domain-containing protein compare
MMP_RS05925 -1.2 -4.1 small nuclear ribonucleoprotein compare
MMP_RS00475 -1.2 -6.3 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS03580 -1.2 -3.2 signal recognition particle-docking protein FtsY compare
MMP_RS08435 -1.2 -3.3 Era-like GTP-binding protein compare
MMP_RS00305 -1.2 -1.7 phosphoribosyl-ATP diphosphatase compare
MMP_RS08165 -1.2 -3.6 phosphoglycerate dehydrogenase compare
MMP_RS07600 -1.2 -3.2 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS08210 -1.2 -2.6 phosphatidylglycerophosphatase A compare
MMP_RS06230 -1.2 -3.3 helix-turn-helix domain-containing protein compare
MMP_RS02190 -1.2 -2.4 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS02235 -1.2 -7.4 CBS domain-containing protein compare
MMP_RS08720 -1.2 -1.8 4Fe-4S binding protein compare
MMP_RS00455 -1.1 -7.0 orotate phosphoribosyltransferase-like protein compare
MMP_RS01800 -1.1 -3.0 TIGR00303 family protein compare
MMP_RS02345 -1.1 -2.3 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS06215 -1.0 -3.8 30S ribosomal protein S6e compare
MMP_RS06865 -1.0 -1.7 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS07540 -1.0 -3.7 CBS domain-containing protein compare
MMP_RS02165 -1.0 -7.1 tRNA-dihydrouridine synthase compare
MMP_RS06200 -1.0 -7.7 M24 family metallopeptidase compare
MMP_RS06175 -1.0 -5.5 winged helix-turn-helix transcriptional regulator compare
MMP_RS04870 -1.0 -4.9 TIGR02253 family HAD-type hydrolase compare
MMP_RS08760 -1.0 -2.9 hypothetical protein compare
MMP_RS08445 -1.0 -4.6 DUF2099 family protein compare
MMP_RS03960 -1.0 -1.1 hypothetical protein compare
MMP_RS03400 -1.0 -2.2 archease compare
MMP_RS03140 -1.0 -7.5 hypothetical protein compare
MMP_RS07685 -0.9 -5.0 TIGR01212 family radical SAM protein compare
MMP_RS06475 -0.9 -3.6 FAD-dependent oxidoreductase compare
MMP_RS03445 -0.9 -1.2 methanogenesis marker 17 protein compare
MMP_RS05345 -0.9 -3.9 hypothetical protein compare
MMP_RS04875 -0.9 -4.7 energy-converting hydrogenase B subunit P compare
MMP_RS00310 -0.9 -5.9 CBS domain-containing protein compare
MMP_RS03145 -0.9 -5.3 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS07580 -0.9 -3.6 DUF356 domain-containing protein compare
MMP_RS07705 -0.9 -6.3 transcriptional regulator compare
MMP_RS01475 -0.9 -5.6 phosphosulfolactate synthase compare
MMP_RS00620 -0.9 -6.1 4Fe-4S binding protein compare
MMP_RS07425 -0.9 -4.8 GTP-binding protein compare
MMP_RS06130 -0.9 -2.6 peptidylprolyl isomerase compare
MMP_RS07955 -0.8 -3.7 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS06885 -0.8 -3.0 50S ribosome-binding GTPase compare
MMP_RS05545 -0.8 -4.6 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS00130 -0.8 -1.5 nickel-responsive transcriptional regulator NikR compare
MMP_RS00320 -0.8 -2.2 class I SAM-dependent methyltransferase compare
MMP_RS01365 -0.8 -2.0 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS06980 -0.8 -4.5 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS07790 -0.8 -5.0 segregation/condensation protein A compare
MMP_RS01795 -0.8 -1.1 methanogenesis marker 6 protein compare
MMP_RS00050 -0.8 -3.5 AarF/UbiB family protein compare
MMP_RS03590 -0.8 -4.1 METTL5 family protein compare
MMP_RS01720 -0.8 -1.4 replication factor C large subunit compare
MMP_RS05815 -0.8 -1.8 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS06840 -0.7 -1.0 DNA-directed RNA polymerase subunit N compare
MMP_RS03095 -0.7 -3.6 diphthine synthase compare
MMP_RS05505 -0.7 -4.6 class IV adenylate cyclase compare
MMP_RS04775 -0.7 -2.0 adenosylhomocysteinase compare
MMP_RS01250 -0.7 -2.7 tRNA (guanine(26)-N(2))-dimethyltransferase compare
MMP_RS07700 -0.7 -4.7 DUF1188 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t2 experiments

For nutrient t2 Sodium acetate across organisms