Experiment set4IT068 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Cholin acetate 10 mM

200 most important genes:

  gene name fitness t score description  
AO353_22685 -3.1 -4.6 peroxidase compare
AO353_12115 -3.1 -2.9 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_12500 -3.0 -2.0 shikimate kinase compare
AO353_00430 -2.6 -3.9 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_05625 -2.2 -2.4 transcription elongation factor GreA compare
AO353_16940 -2.2 -5.8 deoxycytidine triphosphate deaminase compare
AO353_00825 -2.2 -3.7 porin compare
AO353_06495 -2.1 -5.0 gamma-glutamyl phosphate reductase compare
AO353_09000 -2.1 -5.4 argininosuccinate lyase compare
AO353_07075 -2.1 -5.3 elongation factor Tu compare
AO353_11730 -2.0 -9.3 glutamate--cysteine ligase compare
AO353_12090 -2.0 -3.3 imidazole glycerol phosphate synthase subunit HisF compare
AO353_04355 -2.0 -2.2 homoserine dehydrogenase compare
AO353_02250 -1.9 -2.8 chorismate synthase compare
AO353_20565 -1.9 -1.8 tRNA-Ala compare
AO353_07355 -1.8 -5.5 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_10445 -1.8 -2.1 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_10670 -1.8 -6.9 shikimate dehydrogenase compare
AO353_27695 -1.8 -6.8 isocitrate dehydrogenase compare
AO353_03615 -1.8 -3.0 cold-shock protein compare
AO353_14740 -1.7 -3.3 GTP-binding protein compare
AO353_09240 -1.6 -2.8 acetylglutamate kinase compare
AO353_03580 -1.6 -3.5 ATP-dependent DNA helicase RuvB compare
AO353_02070 -1.6 -6.2 prephenate dehydratase compare
AO353_04190 -1.6 -2.5 glycerol-3-phosphate dehydrogenase compare
AO353_18560 -1.6 -2.8 class I peptide chain release factor compare
AO353_13225 -1.6 -3.0 50S ribosomal protein L9 compare
AO353_08165 -1.5 -2.9 pyrroline-5-carboxylate reductase compare
AO353_07155 -1.5 -5.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_07105 -1.5 -1.6 biotin--protein ligase compare
AO353_10320 -1.5 -2.3 hypothetical protein compare
AO353_09060 -1.5 -2.5 hypothetical protein compare
AO353_25450 -1.5 -2.9 cyanate hydratase compare
AO353_04565 -1.5 -5.0 nucleoid-associated protein compare
AO353_05690 -1.5 -3.4 SsrA-binding protein compare
AO353_02000 -1.4 -2.4 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_13160 -1.4 -2.1 membrane protease HflC compare
AO353_02235 -1.4 -4.8 acireductone dioxygenase compare
AO353_04520 -1.4 -4.8 elongation factor 4 compare
AO353_20185 -1.4 -5.1 DNA-binding protein compare
AO353_00460 -1.4 -2.7 TetR family transcriptional regulator compare
AO353_07315 -1.4 -2.6 rRNA methyltransferase compare
AO353_09050 -1.4 -3.6 recombinase XerC compare
AO353_06045 -1.4 -5.7 exodeoxyribonuclease V subunit beta compare
AO353_14420 -1.4 -3.3 molecular chaperone DnaK compare
AO353_04175 -1.3 -4.3 glycerol uptake facilitator GlpF compare
AO353_05240 -1.3 -2.4 rod shape-determining protein MreD compare
AO353_15250 -1.3 -3.1 cytochrome B compare
AO353_06050 -1.3 -5.1 exodeoxyribonuclease V subunit gamma compare
AO353_17750 -1.3 -2.1 transcriptional regulator compare
AO353_15905 -1.3 -5.3 outer membrane protein assembly factor BamB compare
AO353_14795 -1.3 -4.0 molybdopterin-synthase adenylyltransferase compare
AO353_18780 -1.3 -5.1 cobyrinic acid a,c-diamide synthase compare
AO353_12690 -1.3 -1.1 acyl carrier protein compare
AO353_27720 -1.3 -3.9 cupin compare
AO353_13715 -1.3 -3.2 translation initiation factor Sui1 compare
AO353_13925 -1.3 -2.1 XRE family transcriptional regulator compare
AO353_21400 -1.2 -2.0 conjugal transfer protein TraR compare
AO353_08110 -1.2 -4.5 glutathione synthetase compare
AO353_16805 -1.2 -4.2 recombinase RecA compare
AO353_04500 -1.2 -2.4 DNA repair protein RecO compare
AO353_18540 -1.2 -2.3 pseudouridine synthase compare
AO353_14370 -1.2 -4.9 glucose-6-phosphate isomerase compare
AO353_23495 -1.2 -2.4 SAM-dependent methyltransferase compare
AO353_05550 -1.2 -5.0 pseudouridine synthase compare
AO353_29355 -1.2 -3.0 hypothetical protein compare
AO353_06850 -1.2 -3.5 MFS transporter compare
AO353_06540 -1.2 -2.1 hypothetical protein compare
AO353_10930 -1.2 -5.7 DNA polymerase I compare
AO353_18425 -1.2 -3.5 hypothetical protein compare
AO353_00635 -1.2 -2.4 hypothetical protein compare
AO353_08980 -1.1 -2.6 heme biosynthesis operon protein HemX compare
AO353_05810 -1.1 -3.5 dehydrogenase compare
AO353_10510 -1.1 -1.3 benzoate transporter compare
AO353_00660 -1.1 -2.0 transcriptional regulator compare
AO353_11170 -1.1 -7.2 hypothetical protein compare
AO353_08115 -1.1 -4.5 energy transducer TonB compare
AO353_18840 -1.1 -2.8 flagellar biosynthesis protein FlhB compare
AO353_00890 -1.1 -3.9 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
AO353_13200 -1.1 -6.8 exoribonuclease R compare
AO353_20175 -1.1 -2.5 ATP-dependent Clp protease proteolytic subunit compare
AO353_08685 -1.1 -5.4 N-acetylglutamate synthase compare
AO353_15555 -1.1 -3.3 fumarylacetoacetase compare
AO353_13100 -1.1 -1.6 GTPase RsgA compare
AO353_03590 -1.1 -2.8 crossover junction endodeoxyribonuclease RuvC compare
AO353_18505 -1.1 -1.7 translation initiation factor 2 compare
AO353_25320 -1.1 -2.5 phosphoribosyl-dephospho-CoA transferase compare
AO353_11850 -1.0 -3.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_07555 -1.0 -2.3 glycine cleavage system protein R compare
AO353_21290 -1.0 -1.9 hypothetical protein compare
AO353_27725 -1.0 -2.6 GNAT family acetyltransferase compare
AO353_04365 -1.0 -3.8 recombinase XerD compare
AO353_05880 -1.0 -2.0 plasmid stabilization protein compare
AO353_11190 -1.0 -7.1 ABC transporter compare
AO353_02010 -1.0 -4.3 glycosyl transferase family 1 compare
AO353_24130 -1.0 -2.2 hypothetical protein compare
AO353_19490 -1.0 -3.0 Fis family transcriptional regulator compare
AO353_09400 -1.0 -3.0 hypothetical protein compare
AO353_09905 -1.0 -5.6 phosphate-binding protein compare
AO353_06040 -1.0 -2.8 exodeoxyribonuclease V subunit alpha compare
AO353_26045 -1.0 -1.8 hypothetical protein compare
AO353_21625 -1.0 -1.9 Fe/S biogenesis protein NfuA compare
AO353_27000 -1.0 -1.1 hypothetical protein compare
AO353_21635 -1.0 -2.7 cobalamin biosynthesis protein CobE compare
AO353_03670 -1.0 -3.1 ornithine acetyltransferase compare
AO353_06355 -1.0 -2.7 thiamine-phosphate pyrophosphorylase compare
AO353_03710 -1.0 -1.5 formyltetrahydrofolate deformylase compare
AO353_10440 -1.0 -3.5 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO353_08215 -0.9 -2.8 thiazole synthase compare
AO353_10805 -0.9 -2.6 hypothetical protein compare
AO353_05125 -0.9 -3.4 BolA family transcriptional regulator compare
AO353_00355 -0.9 -2.2 transcriptional regulator compare
AO353_26080 -0.9 -2.4 hypothetical protein compare
AO353_06415 -0.9 -2.9 hypothetical protein compare
AO353_14220 -0.9 -1.0 ribosomal large subunit pseudouridine synthase D compare
AO353_14775 -0.9 -3.9 hypothetical protein compare
AO353_01975 -0.9 -4.6 glycosyl transferase compare
AO353_18095 -0.9 -2.6 hypothetical protein compare
AO353_07645 -0.9 -1.1 sarcosine oxidase subunit gamma compare
AO353_09915 -0.9 -4.5 long-chain acyl-CoA thioester hydrolase compare
AO353_09250 -0.9 -2.1 exodeoxyribonuclease III compare
AO353_17515 -0.9 -3.1 short-chain dehydrogenase compare
AO353_03410 -0.9 -1.8 chemotaxis protein CheY compare
AO353_01435 -0.9 -2.7 protein tyrosine phosphatase compare
AO353_11180 -0.9 -8.0 large adhesive protein compare
AO353_12420 -0.9 -2.2 predicted FeS cluster maintenance protein (from data) compare
AO353_11185 -0.9 -6.4 channel protein TolC compare
AO353_17540 -0.9 -2.2 helicase compare
AO353_18500 -0.9 -1.9 chemotaxis protein CheY compare
AO353_19705 -0.9 -3.5 VWA containing CoxE family protein compare
AO353_13685 -0.9 -3.0 3-dehydroquinate dehydratase compare
AO353_09260 -0.9 -4.1 ribonuclease PH compare
AO353_12540 -0.9 -2.2 hypothetical protein compare
AO353_02005 -0.9 -1.3 hypothetical protein compare
AO353_16425 -0.8 -1.7 Fe-S metabolism protein SufE compare
AO353_02465 -0.8 -1.3 hypothetical protein compare
AO353_05420 -0.8 -1.5 peptide chain release factor 3 compare
AO353_09320 -0.8 -5.0 ATP-dependent DNA helicase RecG compare
AO353_00760 -0.8 -1.9 hypothetical protein compare
AO353_20170 -0.8 -2.8 trigger factor compare
AO353_17785 -0.8 -1.7 hypothetical protein compare
AO353_08080 -0.8 -3.4 chemotaxis protein compare
AO353_02075 -0.8 -5.0 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_15445 -0.8 -2.3 disulfide bond formation protein B compare
AO353_22960 -0.8 -3.4 transcriptional regulator compare
AO353_01990 -0.8 -3.6 UDP-N-acetylglucosamine 2-epimerase compare
AO353_15900 -0.8 -1.2 GTP-binding protein compare
AO353_12880 -0.8 -1.4 ADP-heptose--LPS heptosyltransferase compare
AO353_05135 -0.8 -4.4 toluene tolerance protein compare
AO353_23140 -0.8 -2.0 aspartate dehydrogenase compare
AO353_00695 -0.8 -4.5 diguanylate cyclase compare
AO353_10055 -0.8 -5.5 DNA helicase II compare
AO353_23415 -0.8 -2.8 lysine transporter LysE compare
AO353_26835 -0.8 -1.9 transcriptional regulator compare
AO353_13245 -0.8 -4.4 hypothetical protein compare
AO353_28380 -0.8 -2.2 GntR family transcriptional regulator compare
AO353_22810 -0.8 -1.0 hypothetical protein compare
AO353_08090 -0.8 -3.6 chemotaxis protein compare
AO353_03605 -0.8 -0.8 FmdB family transcriptional regulator compare
AO353_15825 -0.8 -2.0 serine acetyltransferase compare
AO353_01970 -0.8 -4.8 hypothetical protein compare
AO353_29145 -0.8 -2.6 HxlR family transcriptional regulator compare
AO353_23245 -0.8 -1.6 DNA-3-methyladenine glycosylase compare
AO353_13140 -0.8 -3.0 tRNA dimethylallyltransferase compare
AO353_01995 -0.8 -5.5 hypothetical protein compare
AO353_21445 -0.8 -1.8 cation:proton antiporter compare
AO353_18655 -0.8 -2.3 flagellar assembly protein FliT compare
AO353_26390 -0.8 -1.6 glyoxalase compare
AO353_27380 -0.7 -1.5 pyocin R2, holin compare
AO353_22135 -0.7 -2.1 anaerobic ribonucleoside-triphosphate reductase activating protein compare
AO353_04340 -0.7 -1.7 hypothetical protein compare
AO353_02885 -0.7 -1.3 flagellar biosynthesis protein FlgN compare
AO353_18135 -0.7 -1.3 hypothetical protein compare
AO353_11915 -0.7 -3.6 agmatine deiminase compare
AO353_17640 -0.7 -1.0 serine peptidase compare
AO353_17160 -0.7 -1.3 aspartate-semialdehyde dehydrogenase compare
AO353_15725 -0.7 -2.4 hypothetical protein compare
AO353_04105 -0.7 -3.9 argininosuccinate synthase compare
AO353_09315 -0.7 -4.3 LysR family transcriptional regulator compare
AO353_02020 -0.7 -2.5 hypothetical protein compare
AO353_03515 -0.7 -1.2 cold-shock protein compare
AO353_13220 -0.7 -3.4 hypothetical protein compare
AO353_02300 -0.7 -1.5 MarR family transcriptional regulator compare
AO353_02810 -0.7 -3.8 histidine kinase compare
AO353_16820 -0.7 -1.9 hypothetical protein compare
AO353_14030 -0.7 -5.0 ABC transporter ATP-binding protein compare
AO353_01725 -0.7 -1.4 phosphohistidine phosphatase compare
AO353_07850 -0.7 -1.9 ATP-dependent RNA helicase compare
AO353_11195 -0.7 -5.6 hemolysin secretion protein D compare
AO353_15885 -0.7 -2.7 Cro/Cl family transcriptional regulator compare
AO353_02710 -0.7 -4.8 (p)ppGpp synthetase compare
AO353_22270 -0.7 -2.4 antibiotic biosynthesis monooxygenase compare
AO353_14060 -0.7 -2.3 hypothetical protein compare
AO353_08600 -0.7 -1.5 TetR family transcriptional regulator compare
AO353_05130 -0.7 -1.0 anti-anti-sigma factor compare
AO353_05145 -0.7 -2.9 ABC transporter permease compare
AO353_22415 -0.7 -2.0 alcohol dehydrogenase compare
AO353_18960 -0.7 -1.4 terminase compare
AO353_12130 -0.7 -2.5 preprotein translocase subunit SecB compare
AO353_27930 -0.7 -2.0 LysR family transcriptional regulator compare


Specific Phenotypes

For 4 genes in this experiment

For stress Cholin acetate in Pseudomonas fluorescens FW300-N2E3

For stress Cholin acetate across organisms