Experiment set4IT068 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Cholin acetate 10 mM

200 most detrimental genes:

  gene name fitness t score description  
AO353_11530 +3.6 21.1 diguanylate cyclase compare
AO353_08835 +2.8 17.8 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
AO353_11525 +2.7 9.6 aminotransferase compare
AO353_10545 +2.6 18.4 ferredoxin compare
AO353_10540 +2.3 19.2 aminobenzoate oxygenase compare
AO353_18775 +2.3 7.1 flagellar biosynthesis protein FlhF compare
AO353_10550 +2.2 6.7 glutamine amidotransferase compare
AO353_02940 +2.0 5.3 DNA-binding protein compare
AO353_15185 +1.8 7.4 ATPase compare
AO353_10780 +1.7 3.0 DNA-binding protein compare
AO353_02195 +1.6 5.4 spermidine synthase compare
AO353_18285 +1.6 3.4 3-phosphoglycerate kinase compare
AO353_17625 +1.5 9.4 RNA polymerase subunit sigma compare
AO353_16495 +1.4 7.6 zinc metallopeptidase RseP compare
AO353_21110 +1.4 4.0 hypothetical protein compare
AO353_04220 +1.4 4.7 chemotaxis protein CheY compare
AO353_16835 +1.4 2.8 LuxR family transcriptional regulator compare
AO353_00490 +1.3 4.0 PasA protein compare
AO353_08015 +1.3 7.3 5,10-methylenetetrahydrofolate reductase compare
AO353_04325 +1.3 3.4 hypothetical protein compare
AO353_01915 +1.3 2.5 GlcG protein compare
AO353_04055 +1.3 2.8 methionine--tRNA ligase compare
AO353_09115 +1.2 7.4 diguanylate cyclase compare
AO353_18290 +1.2 6.4 FMN-dependent NADH-azoreductase compare
AO353_10535 +1.2 8.0 MFS transporter compare
AO353_04940 +1.2 6.6 hypothetical protein compare
AO353_00850 +1.2 4.8 ribonuclease activity regulator protein RraA compare
AO353_19085 +1.1 3.4 organic hydroperoxide resistance protein compare
AO353_12850 +1.1 9.3 diguanylate cyclase compare
AO353_04090 +1.1 3.3 leucyl-tRNA synthetase compare
AO353_00115 +1.1 1.8 hypothetical protein compare
AO353_25335 +1.1 1.7 malonate decarboxylase acyl carrier protein compare
AO353_00620 +1.0 2.6 cytochrome C oxidase Cbb3 compare
AO353_23615 +1.0 3.5 peptidase S54 compare
AO353_02890 +1.0 6.5 pilus assembly protein PilZ compare
AO353_11540 +1.0 5.1 ABC transporter permease compare
AO353_28565 +1.0 3.0 hypothetical protein compare
AO353_12940 +1.0 6.0 glycosyl transferase compare
AO353_08730 +1.0 6.1 glycine cleavage system protein H compare
AO353_02555 +1.0 6.9 histidine kinase compare
AO353_17380 +0.9 3.8 hypothetical protein compare
AO353_09785 +0.9 2.4 hypothetical protein compare
AO353_28860 +0.9 2.8 hypothetical protein compare
AO353_06015 +0.9 3.6 hypothetical protein compare
AO353_04490 +0.9 5.7 murein transglycosylase compare
AO353_27855 +0.9 1.8 MarR family transcriptional regulator compare
AO353_12145 +0.9 3.0 nitrogen regulation protein NR(I) compare
AO353_10630 +0.9 4.7 16S rRNA methyltransferase compare
AO353_18745 +0.9 1.6 flagellar biosynthesis protein flip compare
AO353_01810 +0.9 6.1 branched-chain amino acid ABC transporter substrate-binding protein compare
AO353_22930 +0.9 2.4 hypothetical protein compare
AO353_09875 +0.9 1.7 hypothetical protein compare
AO353_07890 +0.9 5.5 alginate lyase compare
AO353_07480 +0.8 6.1 LysR family transcriptional regulator compare
AO353_10895 +0.8 4.2 hypothetical protein compare
AO353_23620 +0.8 1.3 hypothetical protein compare
AO353_06795 +0.8 1.2 Isochorismatase compare
AO353_20685 +0.8 3.8 colicin V production CvpA compare
AO353_18730 +0.8 4.1 flagellar motor switch protein FliM compare
AO353_26405 +0.8 3.0 hypothetical protein compare
AO353_02550 +0.8 3.5 TetR family transcriptional regulator compare
AO353_00700 +0.8 3.5 Cro/Cl family transcriptional regulator compare
AO353_19750 +0.8 1.5 diaminopimelate epimerase compare
AO353_12845 +0.7 4.5 peptide methionine sulfoxide reductase compare
AO353_02990 +0.7 3.0 6,7-dimethyl-8-ribityllumazine synthase compare
AO353_20925 +0.7 2.2 hypothetical protein compare
AO353_23910 +0.7 1.7 response regulator compare
AO353_21945 +0.7 2.3 protein nirL compare
AO353_01595 +0.7 1.7 Flp pilus assembly protein CpaB compare
AO353_08875 +0.7 2.0 amino acid ABC transporter ATP-binding protein compare
AO353_23590 +0.7 1.4 ArsR family transcriptional regulator compare
AO353_18965 +0.7 3.6 chemotaxis protein compare
AO353_09770 +0.7 2.8 hypothetical protein compare
AO353_23715 +0.7 3.3 hypothetical protein compare
AO353_22600 +0.7 1.6 hypothetical protein compare
AO353_01035 +0.7 2.2 hypothetical protein compare
AO353_03840 +0.7 1.9 ABC transporter ATP-binding protein compare
AO353_12020 +0.7 2.2 hypothetical protein compare
AO353_21455 +0.7 1.3 cation:proton antiporter compare
AO353_00120 +0.7 1.8 DNA-binding protein compare
AO353_12570 +0.7 2.3 type II secretion system protein GspI compare
AO353_24260 +0.7 1.1 hypothetical protein compare
AO353_00455 +0.7 1.8 beta-hexosaminidase compare
AO353_09835 +0.7 1.8 rubredoxin compare
AO353_18770 +0.6 3.1 flagellar biosynthesis protein FlhA compare
AO353_01190 +0.6 1.3 hypothetical protein compare
AO353_17175 +0.6 1.4 beta-ketoadipyl CoA thiolase compare
AO353_21570 +0.6 3.0 type VI secretion system protein ImpK compare
AO353_26285 +0.6 1.3 hypothetical protein compare
AO353_08265 +0.6 2.9 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_12060 +0.6 1.5 acetyltransferase compare
AO353_29165 +0.6 1.6 fructose-bisphosphate aldolase compare
AO353_27160 +0.6 1.9 Pathogenicity locus compare
AO353_11545 +0.6 3.4 sulfate ABC transporter permease compare
AO353_16765 +0.6 1.2 hypothetical protein compare
AO353_17870 +0.6 2.4 NADH dehydrogenase compare
AO353_27585 +0.6 1.6 DNA repair protein compare
AO353_22280 +0.6 1.5 hypothetical protein compare
AO353_15050 +0.6 2.3 nitrate transport permease nrtB compare
AO353_24685 +0.6 1.4 hypothetical protein compare
AO353_19000 +0.6 1.2 ABC transporter compare
AO353_20205 +0.6 2.5 hypothetical protein compare
AO353_07470 +0.6 4.1 acetylornithine aminotransferase compare
AO353_07625 +0.6 2.2 RNA polymerase subunit sigma-70 compare
AO353_07235 +0.6 3.7 phosphoglycolate phosphatase compare
AO353_06720 +0.6 1.1 NrdR family transcriptional regulator compare
AO353_07535 +0.6 2.4 ModE family transcriptional regulator compare
AO353_24605 +0.6 1.4 hypothetical protein compare
AO353_03935 +0.6 2.3 fructose-bisphosphate aldolase compare
AO353_26400 +0.6 1.5 hypothetical protein compare
AO353_22725 +0.6 2.3 hypothetical protein compare
AO353_17365 +0.6 1.4 hypothetical protein compare
AO353_06020 +0.6 3.5 xylose isomerase compare
AO353_27550 +0.6 1.1 hypothetical protein compare
AO353_18675 +0.6 2.8 flagellar hook-basal body protein FliE compare
AO353_23725 +0.6 2.4 hypothetical protein compare
AO353_09155 +0.6 3.8 amino acid dehydrogenase compare
AO353_27220 +0.6 1.8 hypothetical protein compare
AO353_24300 +0.6 2.6 transcriptional regulator compare
AO353_06425 +0.5 1.3 lipoyl synthase compare
AO353_02120 +0.5 4.5 hypothetical protein compare
AO353_04580 +0.5 1.9 GIY-YIG nuclease compare
AO353_06710 +0.5 1.0 riboflavin synthase subunit alpha compare
AO353_19740 +0.5 2.7 MFS transporter compare
AO353_26865 +0.5 1.6 transcriptional regulator compare
AO353_09165 +0.5 3.0 Fe-S oxidoreductase compare
AO353_13480 +0.5 2.3 chaperone modulatory protein CbpM compare
AO353_15500 +0.5 3.8 L-serine ammonia-lyase (EC 4.3.1.17) (from data) compare
AO353_13600 +0.5 1.4 precorrin-6Y C5,15-methyltransferase compare
AO353_23730 +0.5 1.5 hypothetical protein compare
AO353_27190 +0.5 1.9 hypothetical protein compare
AO353_03970 +0.5 4.2 diguanylate cyclase compare
AO353_16440 +0.5 1.6 ArsC family transcriptional regulator compare
AO353_22700 +0.5 1.4 LexA family transcriptional regulator compare
AO353_04225 +0.5 2.7 chemotaxis protein CheA compare
AO353_23485 +0.5 3.4 lytic transglycosylase compare
AO353_04925 +0.5 2.4 aldolase compare
AO353_01015 +0.5 0.9 hypothetical protein compare
AO353_21020 +0.5 2.2 disulfide bond formation protein DsbA compare
AO353_23830 +0.5 1.8 lactate dehydrogenase compare
AO353_18295 +0.5 2.4 hypothetical protein compare
AO353_28300 +0.5 1.8 cupin compare
AO353_11845 +0.5 3.4 ADP-ribose diphosphatase compare
AO353_18925 +0.5 1.0 ATPase compare
AO353_20540 +0.5 2.7 aromatic amino acid aminotransferase compare
AO353_01965 +0.5 2.1 competence protein ComEA compare
AO353_26670 +0.5 1.7 ArsR family transcriptional regulator compare
AO353_21620 +0.5 3.8 peptidylprolyl isomerase compare
AO353_28410 +0.5 2.5 acetyltransferase compare
AO353_13570 +0.5 3.9 TonB-dependent receptor compare
AO353_19025 +0.5 3.9 acetyltransferase compare
AO353_08950 +0.5 2.2 hypothetical protein compare
AO353_08640 +0.5 1.2 hypothetical protein compare
AO353_25845 +0.5 1.3 GNAT family acetyltransferase compare
AO353_19565 +0.5 1.7 vanillate O-demethylase oxidoreductase VanB compare
AO353_16635 +0.5 1.8 pyocin R2, holin compare
AO353_20650 +0.5 3.3 peptidoglycan-binding protein compare
AO353_29025 +0.5 2.0 LysR family transcriptional regulator compare
AO353_16450 +0.5 3.7 protein-PII uridylyltransferase compare
AO353_14860 +0.5 1.9 hypoxanthine-guanine phosphoribosyltransferase compare
AO353_12150 +0.5 2.2 histidine kinase compare
AO353_23745 +0.5 2.2 acetylglucosaminylphosphatidylinositol deacetylase compare
AO353_00540 +0.5 1.3 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_01685 +0.5 0.6 hypothetical protein compare
AO353_18610 +0.5 2.0 flagellar biosynthesis protein FlgI compare
AO353_24980 +0.5 2.1 formate dehydrogenase accessory protein FdhE compare
AO353_19640 +0.5 2.4 chemotaxis protein CheY compare
AO353_05090 +0.5 2.5 2-alkenal reductase compare
AO353_06725 +0.5 0.8 hypothetical protein compare
AO353_18680 +0.5 2.4 flagellar M-ring protein FliF compare
AO353_22420 +0.5 1.3 histidine kinase compare
AO353_25940 +0.5 1.9 hypothetical protein compare
AO353_25585 +0.5 0.9 argininosuccinate lyase compare
AO353_02330 +0.5 1.4 allantoicase compare
AO353_21770 +0.5 1.2 3-hydroxybutyrate dehydrogenase compare
AO353_19515 +0.5 1.9 haloacid dehalogenase compare
AO353_19015 +0.5 3.8 hypothetical protein compare
AO353_18525 +0.5 2.0 hypothetical protein compare
AO353_06325 +0.5 1.7 hypothetical protein compare
AO353_15595 +0.5 1.4 hypothetical protein compare
AO353_12135 +0.5 1.6 rRNA methylase compare
AO353_12070 +0.5 2.8 imidazoleglycerol-phosphate dehydratase compare
AO353_03205 +0.5 1.7 dehydrogenase compare
AO353_10555 +0.5 3.3 antibiotic biosynthesis monooxygenase compare
AO353_20700 +0.5 1.5 oxidoreductase compare
AO353_16040 +0.5 1.0 hypothetical protein compare
AO353_00975 +0.5 1.5 hypothetical protein compare
AO353_22305 +0.5 0.8 LysR family transcriptional regulator compare
AO353_27915 +0.5 2.6 arginine N-succinyltransferase compare
AO353_16740 +0.5 1.4 phage tail protein compare
AO353_20405 +0.5 2.8 transposase compare
AO353_03365 +0.5 2.7 transcriptional regulator compare
AO353_27180 +0.5 1.3 peptidase M48, Ste24p compare
AO353_12665 +0.4 1.4 glycosyl transferase compare
AO353_20660 +0.4 1.4 pseudouridine synthase compare
AO353_29270 +0.4 1.1 type VI secretion system protein compare
AO353_16195 +0.4 1.0 DNA mismatch repair protein MutT compare
AO353_21640 +0.4 0.8 cobalt transporter compare
AO353_18685 +0.4 2.7 flagellar motor switch protein FliG compare
AO353_04715 +0.4 2.4 poly(beta-D-mannuronate) lyase compare


Specific Phenotypes

For 4 genes in this experiment

For stress Cholin acetate in Pseudomonas fluorescens FW300-N2E3

For stress Cholin acetate across organisms