Experiment set4IT068 for Acidovorax sp. GW101-3H11
LB, pH10
Group: pHMedia: LB, pH=10
Culturing: acidovorax_3H11_ML3a, 24 deep-well microplate; Multitron, Aerobic, at 30 (C), shaken=750 rpm
Growth: about 5.1 generations
By: Mark on 6/10/2015
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Specific Phenotypes
For 35 genes in this experiment
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Ubiquinone and menaquinone biosynthesis
- Histidine metabolism
- Tryptophan metabolism
- Nucleotide sugars metabolism
- Glycosaminoglycan degradation
- Ascorbate and aldarate metabolism
- Urea cycle and metabolism of amino groups
- Arginine and proline metabolism
- Tyrosine metabolism
- Phenylalanine metabolism
- Benzoxazinone biosynthesis
- Cyanoamino acid metabolism
- Glutathione metabolism
- Other glycan degradation
- Aminosugars metabolism
- Arachidonic acid metabolism
- Glycosphingolipid biosynthesis - globo series
- Glycosphingolipid biosynthesis - ganglio series
- Naphthalene and anthracene degradation
- Benzoate degradation via CoA ligation
- Styrene degradation
- Porphyrin and chlorophyll metabolism
- Carotenoid biosynthesis - General
- Phenylpropanoid biosynthesis
- Flavonoid biosynthesis
- Anthocyanin biosynthesis
- Alkaloid biosynthesis I
- Insect hormone biosynthesis
- Biosynthesis of alkaloids derived from shikimate pathway
- Biosynthesis of plant hormones
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| indole-3-acetate biosynthesis III (bacteria) | 2 | 1 | 1 |
| acrylonitrile degradation I | 2 | 1 | 1 |
| indole-3-acetate biosynthesis IV (bacteria) | 2 | 1 | 1 |
| chitin degradation II (Vibrio) | 6 | 3 | 2 |
| superpathway of acrylonitrile degradation | 3 | 1 | 1 |
| glutathione-peroxide redox reactions | 3 | 1 | 1 |
| L-arginine degradation X (arginine monooxygenase pathway) | 3 | 1 | 1 |
| reactive oxygen species degradation | 4 | 4 | 1 |
| L-histidine degradation II | 5 | 5 | 1 |
| methylthiopropanoate degradation I (cleavage) | 6 | 2 | 1 |
| chitin degradation III (Serratia) | 7 | 3 | 1 |
| superpathway of dimethylsulfoniopropanoate degradation | 8 | 2 | 1 |
| peptidoglycan recycling II | 10 | 5 | 1 |
| indole-3-acetate biosynthesis II | 12 | 4 | 1 |
| peptidoglycan recycling I | 14 | 9 | 1 |