Experiment set4IT067 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Choline chloride 358 mM

200 most important genes:

  gene name fitness t score description  
AO353_22685 -3.4 -5.1 peroxidase compare
AO353_20565 -3.1 -3.0 tRNA-Ala compare
AO353_18540 -2.9 -2.8 pseudouridine synthase compare
AO353_06040 -2.8 -3.7 exodeoxyribonuclease V subunit alpha compare
AO353_06455 -2.7 -3.5 D-alanyl-D-alanine carboxypeptidase compare
AO353_10930 -2.6 -7.5 DNA polymerase I compare
AO353_04565 -2.2 -6.4 nucleoid-associated protein compare
AO353_03580 -2.1 -4.5 ATP-dependent DNA helicase RuvB compare
AO353_12500 -2.1 -2.7 shikimate kinase compare
AO353_09240 -2.0 -3.0 acetylglutamate kinase compare
AO353_07805 -2.0 -8.9 betaine-aldehyde dehydrogenase compare
AO353_07355 -2.0 -5.8 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_11730 -2.0 -8.7 glutamate--cysteine ligase compare
AO353_12090 -2.0 -3.6 imidazole glycerol phosphate synthase subunit HisF compare
AO353_16805 -2.0 -5.7 recombinase RecA compare
AO353_09320 -1.9 -9.0 ATP-dependent DNA helicase RecG compare
AO353_07810 -1.9 -12.1 choline dehydrogenase conserved
AO353_10445 -1.9 -2.1 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_22415 -1.8 -4.8 alcohol dehydrogenase compare
AO353_09000 -1.8 -5.3 argininosuccinate lyase compare
AO353_00825 -1.8 -4.3 porin compare
AO353_12935 -1.8 -4.2 glycosyltransferase compare
AO353_03590 -1.7 -3.9 crossover junction endodeoxyribonuclease RuvC compare
AO353_27650 -1.7 -4.5 cell division protein FtsK compare
AO353_14150 -1.6 -1.8 peptidylprolyl isomerase compare
AO353_20185 -1.6 -5.8 DNA-binding protein compare
AO353_01975 -1.6 -7.1 glycosyl transferase compare
AO353_07315 -1.6 -3.1 rRNA methyltransferase compare
AO353_07155 -1.5 -5.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_06050 -1.5 -5.6 exodeoxyribonuclease V subunit gamma compare
AO353_18960 -1.5 -2.5 terminase compare
AO353_08685 -1.5 -6.6 N-acetylglutamate synthase compare
AO353_06045 -1.4 -6.2 exodeoxyribonuclease V subunit beta compare
AO353_00460 -1.4 -3.1 TetR family transcriptional regulator compare
AO353_08880 -1.4 -2.6 exopolyphosphatase compare
AO353_14400 -1.4 -3.9 Fis family transcriptional regulator compare
AO353_16835 -1.4 -2.4 LuxR family transcriptional regulator compare
AO353_03710 -1.4 -2.4 formyltetrahydrofolate deformylase compare
AO353_07075 -1.4 -4.9 elongation factor Tu compare
AO353_13100 -1.4 -1.8 GTPase RsgA compare
AO353_05420 -1.4 -2.3 peptide chain release factor 3 compare
AO353_03290 -1.4 -2.4 peptide deformylase compare
AO353_02250 -1.4 -2.8 chorismate synthase compare
AO353_01410 -1.3 -3.0 ribonuclease E compare
AO353_13160 -1.3 -2.1 membrane protease HflC compare
AO353_04500 -1.3 -2.2 DNA repair protein RecO compare
AO353_11750 -1.3 -2.1 ATPase compare
AO353_05550 -1.2 -5.4 pseudouridine synthase compare
AO353_15905 -1.2 -5.4 outer membrane protein assembly factor BamB compare
AO353_04190 -1.2 -2.2 glycerol-3-phosphate dehydrogenase compare
AO353_15410 -1.2 -2.1 hypothetical protein compare
AO353_08110 -1.2 -4.6 glutathione synthetase compare
AO353_16810 -1.2 -3.0 recombinase RecX compare
AO353_10945 -1.2 -2.7 cytochrome C compare
AO353_12115 -1.2 -2.3 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_10670 -1.1 -5.3 shikimate dehydrogenase compare
AO353_17945 -1.1 -1.6 cyclic nucleotide-binding protein compare
AO353_02280 -1.1 -1.8 DNA mismatch repair protein MutS compare
AO353_02070 -1.1 -5.2 prephenate dehydratase compare
AO353_09275 -1.1 -3.0 DNA-directed RNA polymerase subunit omega compare
AO353_20170 -1.1 -3.8 trigger factor compare
AO353_03585 -1.1 -2.4 ATP-dependent DNA helicase RuvA compare
AO353_04520 -1.1 -4.2 elongation factor 4 compare
AO353_23440 -1.1 -2.4 hypothetical protein compare
AO353_22700 -1.1 -1.3 LexA family transcriptional regulator compare
AO353_14740 -1.1 -2.7 GTP-binding protein compare
AO353_04355 -1.1 -1.9 homoserine dehydrogenase compare
AO353_16940 -1.1 -4.3 deoxycytidine triphosphate deaminase compare
AO353_02300 -1.1 -2.2 MarR family transcriptional regulator compare
AO353_08115 -1.0 -4.6 energy transducer TonB compare
AO353_09315 -1.0 -6.5 LysR family transcriptional regulator compare
AO353_02000 -1.0 -2.4 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_12930 -1.0 -2.6 GlcNAc-PI de-N-acetylase compare
AO353_07270 -1.0 -2.5 transcriptional regulator compare
AO353_23735 -1.0 -5.0 AAA family ATPase compare
AO353_16425 -1.0 -2.1 Fe-S metabolism protein SufE compare
AO353_21625 -1.0 -1.7 Fe/S biogenesis protein NfuA compare
AO353_03715 -1.0 -1.8 H-NS histone compare
AO353_22645 -1.0 -1.9 hypothetical protein compare
AO353_12940 -1.0 -4.9 glycosyl transferase compare
AO353_12950 -1.0 -5.2 polymerase compare
AO353_08015 -1.0 -4.8 5,10-methylenetetrahydrofolate reductase compare
AO353_10055 -1.0 -6.8 DNA helicase II compare
AO353_26870 -1.0 -1.5 AP endonuclease compare
AO353_01915 -1.0 -1.3 GlcG protein compare
AO353_21635 -0.9 -3.5 cobalamin biosynthesis protein CobE compare
AO353_02885 -0.9 -1.9 flagellar biosynthesis protein FlgN compare
AO353_01995 -0.9 -6.6 hypothetical protein compare
AO353_05625 -0.9 -1.5 transcription elongation factor GreA compare
AO353_01970 -0.9 -5.7 hypothetical protein compare
AO353_01685 -0.9 -1.3 hypothetical protein compare
AO353_02945 -0.9 -4.8 magnesium transporter compare
AO353_02970 -0.9 -2.6 carbon storage regulator compare
AO353_15465 -0.9 -3.8 cytochrome C oxidase compare
AO353_08980 -0.9 -2.4 heme biosynthesis operon protein HemX compare
AO353_00430 -0.9 -2.4 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_15490 -0.9 -1.9 hypothetical protein compare
AO353_00495 -0.9 -1.3 DNA topoisomerase I compare
AO353_13225 -0.9 -2.3 50S ribosomal protein L9 compare
AO353_03815 -0.9 -1.2 heme utilization protein compare
AO353_18980 -0.9 -2.8 DoxX family protein compare
AO353_07875 -0.9 -2.2 hypothetical protein compare
AO353_01990 -0.9 -3.9 UDP-N-acetylglucosamine 2-epimerase compare
AO353_10455 -0.9 -1.1 tRNA modification GTPase MnmE compare
AO353_09040 -0.9 -1.6 diaminopimelate epimerase compare
AO353_23790 -0.8 -2.3 metal-binding protein compare
AO353_11775 -0.8 -4.4 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_25845 -0.8 -1.9 GNAT family acetyltransferase compare
AO353_05880 -0.8 -0.8 plasmid stabilization protein compare
AO353_27950 -0.8 -1.5 hypothetical protein compare
AO353_28960 -0.8 -2.3 Fis family transcriptional regulator compare
AO353_01135 -0.8 -1.8 enoyl-CoA hydratase compare
AO353_01985 -0.8 -5.0 hypothetical protein compare
AO353_13420 -0.8 -1.2 hypothetical protein compare
AO353_17165 -0.8 -2.1 ATP-dependent helicase compare
AO353_03275 -0.8 -1.7 LysR family transcriptional regulator compare
AO353_11720 -0.8 -2.1 taurine transporter ATP-binding subunit compare
AO353_15555 -0.8 -2.7 fumarylacetoacetase compare
AO353_13640 -0.8 -2.6 histidine kinase compare
AO353_27710 -0.8 -1.6 DNA repair protein compare
AO353_05690 -0.8 -2.3 SsrA-binding protein compare
AO353_22800 -0.8 -1.8 sulfite reductase compare
AO353_09720 -0.8 -1.1 hypothetical protein compare
AO353_19625 -0.8 -1.6 isopentenyl-diphosphate delta-isomerase compare
AO353_18425 -0.8 -2.4 hypothetical protein compare
AO353_04105 -0.8 -4.2 argininosuccinate synthase compare
AO353_08645 -0.8 -1.7 transporter compare
AO353_03595 -0.8 -2.4 hypothetical protein compare
AO353_17885 -0.8 -1.2 hypothetical protein compare
AO353_08245 -0.8 -1.5 cell division ATP-binding protein FtsE compare
AO353_26070 -0.8 -1.7 hypothetical protein compare
AO353_21465 -0.7 -1.9 cation:proton antiporter compare
AO353_00515 -0.7 -1.8 hypothetical protein compare
AO353_08975 -0.7 -3.4 heme biosynthesis protein HemY compare
AO353_00660 -0.7 -1.6 transcriptional regulator compare
AO353_02015 -0.7 -3.6 acetyltransferase compare
AO353_27540 -0.7 -2.8 TetR family transcriptional regulator compare
AO353_27720 -0.7 -2.4 cupin compare
AO353_13140 -0.7 -2.9 tRNA dimethylallyltransferase compare
AO353_09905 -0.7 -4.4 phosphate-binding protein compare
AO353_09050 -0.7 -1.9 recombinase XerC compare
AO353_20815 -0.7 -2.0 LacI family transcriptional regulator compare
AO353_15725 -0.7 -2.5 hypothetical protein compare
AO353_06720 -0.7 -1.1 NrdR family transcriptional regulator compare
AO353_06415 -0.7 -2.4 hypothetical protein compare
AO353_10510 -0.7 -1.1 benzoate transporter compare
AO353_26520 -0.7 -1.8 TetR family transcriptional regulator compare
AO353_26830 -0.7 -2.0 histidine kinase compare
AO353_07800 -0.7 -2.2 transcriptional repressor BetI compare
AO353_06850 -0.7 -2.5 MFS transporter compare
AO353_23785 -0.7 -1.1 hypothetical protein compare
AO353_26080 -0.7 -2.0 hypothetical protein compare
AO353_11480 -0.7 -3.2 hypothetical protein compare
AO353_23510 -0.7 -2.4 transcriptional regulator compare
AO353_22810 -0.7 -1.0 hypothetical protein compare
AO353_14495 -0.7 -4.6 acetolactate synthase 3 catalytic subunit compare
AO353_17850 -0.7 -1.6 SAM-dependent methyltransferase compare
AO353_00510 -0.7 -2.9 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_15460 -0.7 -3.3 cytochrome o ubiquinol oxidase subunit III compare
AO353_22615 -0.7 -2.6 hypothetical protein compare
AO353_28555 -0.7 -1.5 LysR family transcriptional regulator compare
AO353_23625 -0.7 -2.6 hypothetical protein compare
AO353_18040 -0.7 -1.9 fimbrial chaperone protein compare
AO353_22195 -0.7 -1.3 metal ABC transporter permease compare
AO353_16495 -0.7 -3.1 zinc metallopeptidase RseP compare
AO353_08895 -0.7 -3.4 hypothetical protein compare
AO353_19720 -0.7 -2.4 hemolysin D compare
AO353_03115 -0.7 -2.3 TetR family transcriptional regulator compare
AO353_01980 -0.7 -4.7 NAD-dependent dehydratase compare
AO353_09135 -0.7 -1.0 cytochrome C compare
AO353_08775 -0.6 -1.5 cell division protein ZapA compare
AO353_29280 -0.6 -2.0 hypothetical protein compare
AO353_17855 -0.6 -1.6 ribonuclease D compare
AO353_09700 -0.6 -3.1 hypothetical protein compare
AO353_10440 -0.6 -2.7 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO353_02710 -0.6 -4.5 (p)ppGpp synthetase compare
AO353_16745 -0.6 -1.0 ArsR family transcriptional regulator compare
AO353_03945 -0.6 -2.6 hypothetical protein compare
AO353_05900 -0.6 -2.7 permease DsdX compare
AO353_03615 -0.6 -1.6 cold-shock protein compare
AO353_15585 -0.6 -2.4 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
AO353_09150 -0.6 -2.0 cytochrome C2 compare
AO353_18375 -0.6 -3.2 hypothetical protein compare
AO353_23720 -0.6 -2.0 BatB protein compare
AO353_03300 -0.6 -1.9 hypothetical protein compare
AO353_11485 -0.6 -2.1 hypothetical protein compare
AO353_22520 -0.6 -1.2 hypothetical protein compare
AO353_17475 -0.6 -2.6 hypothetical protein compare
AO353_25405 -0.6 -2.6 molybdenum cofactor biosynthesis protein B compare
AO353_15785 -0.6 -3.4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO353_03875 -0.6 -2.3 3-beta hydroxysteroid dehydrogenase compare
AO353_18480 -0.6 -4.8 potassium transporter TrkH compare
AO353_04365 -0.6 -2.6 recombinase XerD compare
AO353_10625 -0.6 -4.7 potassium transporter peripheral membrane component compare
AO353_05020 -0.6 -4.0 cysteine biosynthesis protein CysZ compare
AO353_15395 -0.6 -2.0 transcriptional regulator compare
AO353_18810 -0.6 -2.9 flagellar motor protein compare
AO353_12995 -0.6 -2.4 LysR family transcriptional regulator compare
AO353_13925 -0.6 -1.3 XRE family transcriptional regulator compare
AO353_19685 -0.6 -1.7 alkylhydroperoxidase compare


Specific Phenotypes

For 1 genes in this experiment

For stress Choline chloride in Pseudomonas fluorescens FW300-N2E3

For stress Choline chloride across organisms