Experiment set4IT066 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Choline chloride 268.5 mM

200 most important genes:

  gene name fitness t score description  
AO353_22685 -4.0 -3.8 peroxidase compare
AO353_06455 -2.9 -3.4 D-alanyl-D-alanine carboxypeptidase compare
AO353_02250 -2.5 -2.4 chorismate synthase compare
AO353_12500 -2.4 -2.8 shikimate kinase compare
AO353_18540 -2.4 -3.5 pseudouridine synthase compare
AO353_10930 -2.4 -7.7 DNA polymerase I compare
AO353_07355 -2.1 -5.2 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_01410 -2.1 -3.8 ribonuclease E compare
AO353_16805 -2.0 -6.3 recombinase RecA compare
AO353_16940 -2.0 -5.9 deoxycytidine triphosphate deaminase compare
AO353_00825 -1.9 -4.5 porin compare
AO353_11730 -1.8 -8.5 glutamate--cysteine ligase compare
AO353_01975 -1.8 -7.4 glycosyl transferase compare
AO353_07810 -1.8 -11.1 choline dehydrogenase conserved
AO353_05420 -1.8 -2.5 peptide chain release factor 3 compare
AO353_04190 -1.7 -2.7 glycerol-3-phosphate dehydrogenase compare
AO353_18560 -1.7 -3.3 class I peptide chain release factor compare
AO353_12090 -1.7 -2.7 imidazole glycerol phosphate synthase subunit HisF compare
AO353_09320 -1.7 -8.6 ATP-dependent DNA helicase RecG compare
AO353_06045 -1.7 -6.9 exodeoxyribonuclease V subunit beta compare
AO353_27650 -1.7 -4.4 cell division protein FtsK compare
AO353_03590 -1.6 -3.8 crossover junction endodeoxyribonuclease RuvC compare
AO353_09000 -1.6 -4.9 argininosuccinate lyase compare
AO353_08880 -1.6 -2.4 exopolyphosphatase compare
AO353_06850 -1.6 -4.4 MFS transporter compare
AO353_05690 -1.6 -3.7 SsrA-binding protein compare
AO353_13100 -1.6 -2.2 GTPase RsgA compare
AO353_04500 -1.6 -3.0 DNA repair protein RecO compare
AO353_07805 -1.6 -7.9 betaine-aldehyde dehydrogenase compare
AO353_06050 -1.6 -5.7 exodeoxyribonuclease V subunit gamma compare
AO353_09240 -1.5 -3.1 acetylglutamate kinase compare
AO353_27720 -1.5 -4.8 cupin compare
AO353_06415 -1.5 -4.2 hypothetical protein compare
AO353_09315 -1.5 -8.4 LysR family transcriptional regulator compare
AO353_07315 -1.5 -2.9 rRNA methyltransferase compare
AO353_09250 -1.4 -3.0 exodeoxyribonuclease III compare
AO353_17640 -1.4 -2.5 serine peptidase compare
AO353_15410 -1.4 -1.9 hypothetical protein compare
AO353_19360 -1.4 -2.5 peroxiredoxin compare
AO353_04565 -1.4 -5.2 nucleoid-associated protein compare
AO353_06040 -1.4 -3.5 exodeoxyribonuclease V subunit alpha compare
AO353_13925 -1.4 -1.8 XRE family transcriptional regulator compare
AO353_02070 -1.4 -5.6 prephenate dehydratase compare
AO353_08685 -1.4 -6.6 N-acetylglutamate synthase compare
AO353_04105 -1.4 -6.8 argininosuccinate synthase compare
AO353_26045 -1.4 -2.5 hypothetical protein compare
AO353_04520 -1.4 -4.9 elongation factor 4 compare
AO353_03580 -1.4 -3.1 ATP-dependent DNA helicase RuvB compare
AO353_20185 -1.3 -5.2 DNA-binding protein compare
AO353_03585 -1.3 -2.8 ATP-dependent DNA helicase RuvA compare
AO353_10670 -1.3 -5.3 shikimate dehydrogenase compare
AO353_07155 -1.3 -5.1 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_00430 -1.2 -3.3 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_08115 -1.2 -5.0 energy transducer TonB compare
AO353_15905 -1.2 -5.3 outer membrane protein assembly factor BamB compare
AO353_08980 -1.2 -2.9 heme biosynthesis operon protein HemX compare
AO353_09040 -1.2 -2.1 diaminopimelate epimerase compare
AO353_13715 -1.2 -3.6 translation initiation factor Sui1 compare
AO353_08165 -1.2 -2.6 pyrroline-5-carboxylate reductase compare
AO353_14740 -1.2 -3.0 GTP-binding protein compare
AO353_12115 -1.2 -2.3 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_21625 -1.1 -2.2 Fe/S biogenesis protein NfuA compare
AO353_12930 -1.1 -2.7 GlcNAc-PI de-N-acetylase compare
AO353_10055 -1.1 -7.6 DNA helicase II compare
AO353_09275 -1.1 -3.0 DNA-directed RNA polymerase subunit omega compare
AO353_28425 -1.1 -3.1 TetR family transcriptional regulator compare
AO353_11750 -1.1 -1.8 ATPase compare
AO353_13140 -1.1 -4.0 tRNA dimethylallyltransferase compare
AO353_27380 -1.1 -2.0 pyocin R2, holin compare
AO353_02020 -1.1 -3.6 hypothetical protein compare
AO353_23495 -1.1 -2.4 SAM-dependent methyltransferase compare
AO353_09135 -1.1 -2.0 cytochrome C compare
AO353_03670 -1.1 -3.6 ornithine acetyltransferase compare
AO353_14495 -1.0 -6.6 acetolactate synthase 3 catalytic subunit compare
AO353_07075 -1.0 -3.5 elongation factor Tu compare
AO353_20175 -1.0 -2.6 ATP-dependent Clp protease proteolytic subunit compare
AO353_12950 -1.0 -5.5 polymerase compare
AO353_02945 -1.0 -5.3 magnesium transporter compare
AO353_08015 -1.0 -4.8 5,10-methylenetetrahydrofolate reductase compare
AO353_05130 -1.0 -1.4 anti-anti-sigma factor compare
AO353_24190 -1.0 -2.6 hypothetical protein compare
AO353_03615 -1.0 -2.3 cold-shock protein compare
AO353_08245 -1.0 -2.5 cell division ATP-binding protein FtsE compare
AO353_29280 -1.0 -2.7 hypothetical protein compare
AO353_14400 -0.9 -2.9 Fis family transcriptional regulator compare
AO353_16530 -0.9 -1.6 ribonuclease HII compare
AO353_26115 -0.9 -1.4 hypothetical protein compare
AO353_12105 -0.9 -4.0 peptidase S41 compare
AO353_20170 -0.9 -3.4 trigger factor compare
AO353_06480 -0.9 -1.9 50S rRNA methyltransferase compare
AO353_12130 -0.9 -3.2 preprotein translocase subunit SecB compare
AO353_14775 -0.9 -3.7 hypothetical protein compare
AO353_12075 -0.9 -5.0 imidazole glycerol phosphate synthase subunit HisH compare
AO353_18780 -0.9 -4.0 cobyrinic acid a,c-diamide synthase compare
AO353_25945 -0.9 -2.5 hypothetical protein compare
AO353_00510 -0.9 -3.6 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_04355 -0.9 -1.4 homoserine dehydrogenase compare
AO353_10560 -0.9 -3.3 hypothetical protein compare
AO353_08110 -0.9 -3.7 glutathione synthetase compare
AO353_21400 -0.9 -1.7 conjugal transfer protein TraR compare
AO353_05550 -0.9 -3.9 pseudouridine synthase compare
AO353_23725 -0.9 -3.3 hypothetical protein compare
AO353_12880 -0.9 -1.0 ADP-heptose--LPS heptosyltransferase compare
AO353_01980 -0.8 -6.0 NAD-dependent dehydratase compare
AO353_17160 -0.8 -1.9 aspartate-semialdehyde dehydrogenase compare
AO353_09890 -0.8 -3.1 phosphate ABC transporter ATP-binding protein compare
AO353_03715 -0.8 -1.6 H-NS histone compare
AO353_02810 -0.8 -4.4 histidine kinase compare
AO353_27090 -0.8 -1.5 hypothetical protein compare
AO353_22415 -0.8 -2.5 alcohol dehydrogenase compare
AO353_03420 -0.8 -2.8 phosphogluconate dehydratase compare
AO353_18425 -0.8 -2.9 hypothetical protein compare
AO353_26055 -0.8 -2.0 hypothetical protein compare
AO353_01970 -0.8 -5.2 hypothetical protein compare
AO353_10430 -0.8 -2.4 chromosome partitioning protein ParB compare
AO353_14500 -0.8 -3.7 acetolactate synthase 3 regulatory subunit compare
AO353_13640 -0.8 -2.6 histidine kinase compare
AO353_05150 -0.8 -2.9 ABC transporter ATP-binding protein compare
AO353_12345 -0.8 -1.4 twin-arginine protein translocation system subunit TatC compare
AO353_24415 -0.8 -1.7 glutamine ABC transporter ATP-binding protein compare
AO353_16810 -0.8 -2.3 recombinase RecX compare
AO353_01995 -0.8 -5.8 hypothetical protein compare
AO353_02010 -0.8 -3.6 glycosyl transferase family 1 compare
AO353_03290 -0.8 -1.3 peptide deformylase compare
AO353_11775 -0.8 -4.1 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_13155 -0.8 -2.4 hypothetical protein compare
AO353_19310 -0.8 -1.3 enoyl-CoA hydratase compare
AO353_12765 -0.8 -2.2 transcriptional regulator compare
AO353_13225 -0.8 -2.1 50S ribosomal protein L9 compare
AO353_03795 -0.8 -2.4 fumarate hydratase compare
AO353_06490 -0.8 -2.2 nicotinate-nucleotide adenylyltransferase compare
AO353_27455 -0.8 -2.7 hypothetical protein compare
AO353_02060 -0.8 -2.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_08265 -0.8 -3.2 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_23790 -0.7 -1.2 metal-binding protein compare
AO353_23710 -0.7 -3.2 protein BatD compare
AO353_19685 -0.7 -2.2 alkylhydroperoxidase compare
AO353_16495 -0.7 -3.4 zinc metallopeptidase RseP compare
AO353_21635 -0.7 -2.8 cobalamin biosynthesis protein CobE compare
AO353_23950 -0.7 -1.4 hypothetical protein compare
AO353_23945 -0.7 -1.3 hypothetical protein compare
AO353_11525 -0.7 -3.8 aminotransferase compare
AO353_23835 -0.7 -1.9 hypothetical protein compare
AO353_27180 -0.7 -2.3 peptidase M48, Ste24p compare
AO353_03360 -0.7 -4.0 glucose-6-phosphate dehydrogenase compare
AO353_15270 -0.7 -2.7 phospholipid-binding protein compare
AO353_24600 -0.7 -2.1 hypothetical protein compare
AO353_09050 -0.7 -2.3 recombinase XerC compare
AO353_14590 -0.7 -0.8 serine kinase/phosphatase compare
AO353_03710 -0.7 -1.5 formyltetrahydrofolate deformylase compare
AO353_12935 -0.7 -2.0 glycosyltransferase compare
AO353_15050 -0.7 -2.2 nitrate transport permease nrtB compare
AO353_01405 -0.7 -3.6 23S rRNA pseudouridylate synthase compare
AO353_02100 -0.7 -2.0 phosphoglycolate phosphatase compare
AO353_06275 -0.7 -2.1 DNA polymerase III subunit epsilon compare
AO353_00620 -0.7 -1.4 cytochrome C oxidase Cbb3 compare
AO353_04175 -0.7 -2.6 glycerol uptake facilitator GlpF compare
AO353_14150 -0.7 -1.0 peptidylprolyl isomerase compare
AO353_07325 -0.7 -1.3 diadenosine tetraphosphatase compare
AO353_11915 -0.7 -3.7 agmatine deiminase compare
AO353_04365 -0.7 -3.0 recombinase XerD compare
AO353_15465 -0.7 -3.1 cytochrome C oxidase compare
AO353_23925 -0.7 -2.9 histidine kinase compare
AO353_01990 -0.7 -3.3 UDP-N-acetylglucosamine 2-epimerase compare
AO353_21445 -0.7 -1.6 cation:proton antiporter compare
AO353_20200 -0.7 -1.8 peptidylprolyl isomerase compare
AO353_18790 -0.7 -2.1 histidine kinase compare
AO353_12365 -0.7 -2.2 phosphoribosyl-AMP cyclohydrolase compare
AO353_27400 -0.7 -1.9 hypothetical protein compare
AO353_11770 -0.7 -1.2 molecular chaperone Hsp33 compare
AO353_20565 -0.7 -1.0 tRNA-Ala compare
AO353_12055 -0.7 -2.8 cell envelope biogenesis protein AsmA compare
AO353_12110 -0.7 -3.9 peptidase M23 compare
AO353_13580 -0.7 -2.0 copper resistance protein CopZ compare
AO353_03410 -0.7 -1.5 chemotaxis protein CheY compare
AO353_12940 -0.6 -2.9 glycosyl transferase compare
AO353_06495 -0.6 -2.5 gamma-glutamyl phosphate reductase compare
AO353_18130 -0.6 -1.4 hypothetical protein compare
AO353_00515 -0.6 -1.6 hypothetical protein compare
AO353_03275 -0.6 -1.5 LysR family transcriptional regulator compare
AO353_10510 -0.6 -1.1 benzoate transporter compare
AO353_18705 -0.6 -2.0 anti-anti-sigma factor compare
AO353_02710 -0.6 -4.4 (p)ppGpp synthetase compare
AO353_15455 -0.6 -4.8 cytochrome o ubiquinol oxidase subunit I compare
AO353_18925 -0.6 -1.4 ATPase compare
AO353_22615 -0.6 -2.5 hypothetical protein compare
AO353_06585 -0.6 -3.1 hypothetical protein compare
AO353_04490 -0.6 -3.9 murein transglycosylase compare
AO353_19145 -0.6 -2.3 protease HtpX compare
AO353_12395 -0.6 -1.9 poly(3-hydroxyalkanoate) granule-associated protein PhaF compare
AO353_24915 -0.6 -1.3 hypothetical protein compare
AO353_00185 -0.6 -0.7 phage tail protein compare
AO353_15460 -0.6 -3.0 cytochrome o ubiquinol oxidase subunit III compare
AO353_26950 -0.6 -2.1 hypothetical protein compare
AO353_20660 -0.6 -2.0 pseudouridine synthase compare
AO353_05340 -0.6 -2.7 histidine kinase compare
AO353_22800 -0.6 -1.6 sulfite reductase compare
AO353_09840 -0.6 -2.4 chorismate--pyruvate lyase compare
AO353_22370 -0.6 -2.0 branched-chain amino acid ABC transporter substrate-binding protein compare
AO353_28990 -0.6 -3.1 LOG family protein compare


Specific Phenotypes

For 1 genes in this experiment

For stress Choline chloride in Pseudomonas fluorescens FW300-N2E3

For stress Choline chloride across organisms