Experiment set4IT066 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Choline chloride 268.5 mM

200 most detrimental genes:

  gene name fitness t score description  
AO353_10780 +1.9 3.4 DNA-binding protein compare
AO353_06795 +1.3 2.4 Isochorismatase compare
AO353_00120 +1.1 2.8 DNA-binding protein compare
AO353_09060 +1.1 3.3 hypothetical protein compare
AO353_06710 +1.1 2.0 riboflavin synthase subunit alpha compare
AO353_00455 +1.1 3.2 beta-hexosaminidase compare
AO353_19755 +1.1 3.9 cytosine deaminase compare
AO353_25585 +1.1 2.2 argininosuccinate lyase compare
AO353_04090 +0.9 2.6 leucyl-tRNA synthetase compare
AO353_01015 +0.9 2.3 hypothetical protein compare
AO353_22280 +0.9 1.7 hypothetical protein compare
AO353_24685 +0.9 2.1 hypothetical protein compare
AO353_00170 +0.8 2.4 lysozyme compare
AO353_26935 +0.8 2.1 LysR family transcriptional regulator compare
AO353_09785 +0.8 2.1 hypothetical protein compare
AO353_22600 +0.8 2.1 hypothetical protein compare
AO353_19530 +0.8 1.1 quinohemoprotein amine dehydrogenase compare
AO353_05010 +0.8 2.1 HopJ type III effector protein compare
AO353_17855 +0.8 2.7 ribonuclease D compare
AO353_06670 +0.8 2.6 MFS transporter compare
AO353_25925 +0.8 1.3 hypothetical protein compare
AO353_22580 +0.8 2.5 3-demethylubiquinone-9 3-methyltransferase compare
AO353_04055 +0.8 1.3 methionine--tRNA ligase compare
AO353_24850 +0.7 2.9 aspartate aminotransferase compare
AO353_09065 +0.7 4.2 hypothetical protein compare
AO353_26400 +0.7 2.0 hypothetical protein compare
AO353_12390 +0.7 1.6 poly(3-hydroxyalkanoate) granule-associated protein PhaI compare
AO353_26285 +0.7 1.6 hypothetical protein compare
AO353_02465 +0.7 1.2 hypothetical protein compare
AO353_09875 +0.7 1.5 hypothetical protein compare
AO353_14930 +0.7 2.3 GntR family transcriptional regulator compare
AO353_17965 +0.7 2.8 hypothetical protein compare
AO353_23910 +0.7 1.8 response regulator compare
AO353_12650 +0.6 1.2 hypothetical protein compare
AO353_00140 +0.6 2.6 phage tail protein compare
AO353_21255 +0.6 2.8 ABC transporter ATP-binding protein compare
AO353_06100 +0.6 1.4 thymidylate synthase compare
AO353_17175 +0.6 1.6 beta-ketoadipyl CoA thiolase compare
AO353_29165 +0.6 2.0 fructose-bisphosphate aldolase compare
AO353_23800 +0.6 2.8 hypothetical protein compare
AO353_09045 +0.6 1.7 hypothetical protein compare
AO353_27160 +0.6 1.8 Pathogenicity locus compare
AO353_10630 +0.6 2.5 16S rRNA methyltransferase compare
AO353_16195 +0.6 1.2 DNA mismatch repair protein MutT compare
AO353_07445 +0.6 0.6 pyrroloquinoline quinone biosynthesis protein PqqD compare
AO353_14340 +0.6 1.7 phospholipid-binding protein compare
AO353_24535 +0.6 1.5 hypothetical protein compare
AO353_16740 +0.6 2.0 phage tail protein compare
AO353_04275 +0.6 3.0 polyamine ABC transporter ATP-binding protein compare
AO353_03870 +0.6 2.8 LysR family transcriptional regulator compare
AO353_09765 +0.6 2.2 hypothetical protein compare
AO353_21770 +0.6 1.9 3-hydroxybutyrate dehydrogenase compare
AO353_29105 +0.6 2.7 hypothetical protein compare
AO353_09405 +0.6 2.1 type VI secretion protein compare
AO353_00850 +0.6 2.4 ribonuclease activity regulator protein RraA compare
AO353_23045 +0.6 2.3 hypothetical protein compare
AO353_26865 +0.6 1.9 transcriptional regulator compare
AO353_13585 +0.6 2.0 predicted copper homeostasis protein (from data) compare
AO353_04410 +0.6 1.9 phosphoribosylglycinamide formyltransferase compare
AO353_21425 +0.6 2.2 hypothetical protein compare
AO353_13600 +0.6 1.8 precorrin-6Y C5,15-methyltransferase compare
AO353_21245 +0.6 2.5 hypothetical protein compare
AO353_23540 +0.6 2.9 benzoate 1,2-dioxygenase small subunit compare
AO353_09395 +0.6 1.9 type VI secretion protein compare
AO353_24605 +0.6 1.3 hypothetical protein compare
AO353_23410 +0.5 0.9 hypothetical protein compare
AO353_02990 +0.5 1.9 6,7-dimethyl-8-ribityllumazine synthase compare
AO353_12570 +0.5 1.4 type II secretion system protein GspI compare
AO353_26990 +0.5 1.7 hypothetical protein compare
AO353_23275 +0.5 2.7 lysine transporter LysE compare
AO353_03495 +0.5 2.6 glycine cleavage system protein H compare
AO353_13865 +0.5 1.7 hypothetical protein compare
AO353_15490 +0.5 1.4 hypothetical protein compare
AO353_23350 +0.5 1.8 hypothetical protein compare
AO353_10725 +0.5 0.9 dodecin flavoprotein compare
AO353_08060 +0.5 1.7 hypothetical protein compare
AO353_03815 +0.5 0.9 heme utilization protein compare
AO353_20510 +0.5 1.1 amidase compare
AO353_22510 +0.5 1.8 hypothetical protein compare
AO353_23840 +0.5 2.0 hypothetical protein compare
AO353_16710 +0.5 1.4 hypothetical protein compare
AO353_22660 +0.5 2.7 hypothetical protein compare
AO353_09885 +0.5 0.9 transcriptional regulator PhoU compare
AO353_28965 +0.5 2.1 hypothetical protein compare
AO353_02765 +0.5 1.7 NAD(P)H-quinone oxidoreductase compare
AO353_25305 +0.5 1.6 malonate transporter compare
AO353_19435 +0.5 1.2 TetR family transcriptional regulator compare
AO353_13590 +0.5 2.7 cobalt-precorrin-6X reductase compare
AO353_17945 +0.5 1.2 cyclic nucleotide-binding protein compare
AO353_22870 +0.5 1.3 oxidoreductase compare
AO353_00065 +0.5 2.0 oxidoreductase compare
AO353_28930 +0.5 1.0 hypothetical protein compare
AO353_26810 +0.5 1.6 (2Fe-2S)-binding protein compare
AO353_23830 +0.5 1.9 lactate dehydrogenase compare
AO353_08860 +0.5 2.5 amino acid ABC transporter substrate-binding protein compare
AO353_17410 +0.5 1.1 arylsulfate sulfotransferase compare
AO353_01035 +0.5 1.2 hypothetical protein compare
AO353_28380 +0.5 1.8 GntR family transcriptional regulator compare
AO353_07900 +0.5 1.5 hypothetical protein compare
AO353_21750 +0.5 1.4 peptidylprolyl isomerase compare
AO353_23430 +0.5 1.7 (2Fe-2S)-binding protein compare
AO353_00490 +0.5 0.9 PasA protein compare
AO353_17900 +0.5 2.2 RND transporter MFP subunit compare
AO353_26650 +0.5 2.1 dihydrolipoamide dehydrogenase compare
AO353_26715 +0.5 2.0 molybdenum ABC transporter substrate-binding protein compare
AO353_18525 +0.5 1.9 hypothetical protein compare
AO353_01330 +0.5 2.8 pilus assembly protein PilZ compare
AO353_04480 +0.5 1.5 NGG1p interacting factor NIF3 compare
AO353_07610 +0.5 0.8 hypothetical protein compare
AO353_21415 +0.5 2.3 hypothetical protein compare
AO353_04800 +0.5 1.8 short-chain dehydrogenase compare
AO353_27570 +0.5 1.7 GCN5 family acetyltransferase compare
AO353_19025 +0.5 3.5 acetyltransferase compare
AO353_12455 +0.5 1.6 nuclease compare
AO353_03640 +0.5 2.1 nucleotide-binding protein compare
AO353_26945 +0.5 0.9 transcriptional regulator compare
AO353_17615 +0.5 2.3 hypothetical protein compare
AO353_23670 +0.5 1.8 glutathione S-transferase compare
AO353_17005 +0.5 0.9 hypothetical protein compare
AO353_25775 +0.5 2.6 N-acetylglucosamine-6-sulfatase compare
AO353_21675 +0.5 2.3 phospholipase compare
AO353_02940 +0.4 1.1 DNA-binding protein compare
AO353_09450 +0.4 2.0 type VI secretion protein compare
AO353_00920 +0.4 2.1 alpha-L-glutamate ligase compare
AO353_03195 +0.4 1.8 transcriptional regulator compare
AO353_05280 +0.4 1.2 4-carboxymuconolactone decarboxylase compare
AO353_25575 +0.4 1.6 GNAT family acetyltransferase compare
AO353_25025 +0.4 1.9 cupin compare
AO353_21905 +0.4 1.2 hypothetical protein compare
AO353_26525 +0.4 0.8 hypothetical protein compare
AO353_17995 +0.4 2.3 hypothetical protein compare
AO353_26240 +0.4 0.7 hypothetical protein compare
AO353_29270 +0.4 1.5 type VI secretion system protein compare
AO353_01045 +0.4 1.5 phasin compare
AO353_01190 +0.4 0.5 hypothetical protein compare
AO353_21620 +0.4 3.3 peptidylprolyl isomerase compare
AO353_03210 +0.4 1.2 GNAT family acetyltransferase compare
AO353_19015 +0.4 3.5 hypothetical protein compare
AO353_08950 +0.4 1.6 hypothetical protein compare
AO353_11085 +0.4 1.8 NAD(P) transhydrogenase compare
AO353_22305 +0.4 0.6 LysR family transcriptional regulator compare
AO353_00905 +0.4 1.5 GntR family transcriptional regulator compare
AO353_07785 +0.4 1.9 ABC transporter for Carnitine, permease component (from data) compare
AO353_21410 +0.4 0.8 hypothetical protein compare
AO353_27940 +0.4 1.8 succinyl-CoA--3-ketoacid-CoA transferase compare
AO353_07460 +0.4 1.2 DNA-binding protein compare
AO353_18335 +0.4 0.9 hypothetical protein compare
AO353_11735 +0.4 1.8 hypothetical protein compare
AO353_05970 +0.4 2.2 Tryptophan 2,3-dioxygenase (EC 1.13.11.11) (from data) compare
AO353_14735 +0.4 1.9 hypothetical protein compare
AO353_21585 +0.4 1.9 hydroxyacid dehydrogenase compare
AO353_16820 +0.4 0.7 hypothetical protein compare
AO353_28000 +0.4 1.7 branched-chain amino acid ABC transporter compare
AO353_22010 +0.4 1.4 hypothetical protein compare
AO353_23125 +0.4 1.3 hypothetical protein compare
AO353_04340 +0.4 1.2 hypothetical protein compare
AO353_02970 +0.4 1.5 carbon storage regulator compare
AO353_28275 +0.4 2.8 FAD-dependent oxidoreductase compare
AO353_11530 +0.4 2.6 diguanylate cyclase compare
AO353_07745 +0.4 1.9 NADPH:quinone reductase compare
AO353_00205 +0.4 1.5 head protein compare
AO353_08465 +0.4 3.3 phosphoenolpyruvate-protein phosphotransferase compare
AO353_28155 +0.4 1.5 LysR family transcriptional regulator compare
AO353_25475 +0.4 1.7 multidrug resistance protein compare
AO353_14730 +0.4 1.9 hypothetical protein compare
AO353_20040 +0.4 1.8 hypothetical protein compare
AO353_25665 +0.4 1.9 3-hydroxy-isobutyryl-CoA hydrolase (EC 3.1.2.4) (from data) compare
AO353_24340 +0.4 0.6 TetR family transcriptional regulator compare
AO353_10765 +0.4 2.5 HAD family hydrolase compare
AO353_28235 +0.4 1.5 acetylornithine deacetylase compare
AO353_19740 +0.4 2.0 MFS transporter compare
AO353_22145 +0.4 1.9 FTR1 family iron permease compare
AO353_09670 +0.4 1.9 hypothetical protein compare
AO353_02175 +0.4 1.0 carbon storage regulator compare
AO353_14070 +0.4 1.8 hypothetical protein compare
AO353_16925 +0.4 3.2 AmpG family muropeptide MFS transporter compare
AO353_02775 +0.4 1.3 3-methyladenine DNA glycosylase compare
AO353_07515 +0.4 0.7 transporter compare
AO353_16955 +0.4 1.7 succinylglutamate desuccinylase compare
AO353_19640 +0.4 2.1 chemotaxis protein CheY compare
AO353_16025 +0.4 1.4 hypothetical protein compare
AO353_03805 +0.4 1.0 C4-dicarboxylate ABC transporter compare
AO353_28405 +0.4 1.8 hypothetical protein compare
AO353_21015 +0.4 2.5 multidrug DMT transporter permease compare
AO353_22515 +0.4 1.6 poly-gamma-glutamate biosynthesis protein compare
AO353_01075 +0.4 1.8 hypothetical protein compare
AO353_03305 +0.4 1.9 hypothetical protein compare
AO353_24595 +0.4 0.5 hypothetical protein compare
AO353_25340 +0.4 1.4 triphosphoribosyl-dephospho-CoA synthase MdcB compare
AO353_15435 +0.4 2.6 transcriptional regulator compare
AO353_28295 +0.4 1.0 GNAT family acetyltransferase compare
AO353_17015 +0.4 2.0 hypothetical protein compare
AO353_00975 +0.4 1.3 hypothetical protein compare
AO353_04230 +0.4 1.3 chemotaxis protein CheW compare
AO353_16280 +0.4 2.2 ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, permease component 1 (from data) compare
AO353_23165 +0.4 1.1 cupin compare
AO353_21735 +0.4 1.6 IclR family transcriptional regulator compare
AO353_22505 +0.4 2.2 hypothetical protein compare
AO353_03150 +0.4 1.2 peptidase M4 compare
AO353_24165 +0.4 1.8 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For stress Choline chloride in Pseudomonas fluorescens FW300-N2E3

For stress Choline chloride across organisms