Experiment set4IT065 for Pseudomonas fluorescens FW300-N1B4

Compare to:

L-Malic acid disodium salt monohydrate carbon source

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_6 -4.1 -4.0 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_5666 -3.7 -3.5 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_2880 -3.7 -10.8 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_1307 -3.5 -2.4 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_1624 -3.5 -7.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_1408 -3.3 -4.4 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_1534 -3.3 -17.1 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_2384 -3.3 -9.7 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_1830 -3.2 -8.2 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_2545 -3.2 -11.4 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_2303 -3.2 -13.5 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_2549 -3.2 -7.5 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_1067 -3.1 -6.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_15 -3.1 -3.6 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_2112 -3.0 -12.8 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_1831 -3.0 -10.2 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_5665 -3.0 -4.7 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_3697 -2.9 -9.1 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_1533 -2.9 -6.9 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_2547 -2.9 -3.3 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_1626 -2.7 -6.7 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_2491 -2.7 -3.9 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf1N1B4_2488 -2.7 -7.6 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf1N1B4_2878 -2.7 -8.8 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_742 -2.7 -6.9 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_12 -2.6 -6.3 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_2338 -2.6 -6.5 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_2548 -2.5 -6.7 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_3812 -2.5 -9.4 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_350 -2.5 -7.2 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_2282 -2.5 -8.6 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_1434 -2.5 -6.4 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_1627 -2.5 -4.5 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_2272 -2.4 -3.6 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_2879 -2.4 -5.8 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_4065 -2.4 -7.7 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_1565 -2.4 -4.5 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_1315 -2.3 -8.4 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_3506 -2.3 -7.3 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_762 -2.3 -6.4 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_3153 -2.3 -2.1 hypothetical protein compare
Pf1N1B4_2487 -2.2 -7.7 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_1617 -2.2 -7.8 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_3907 -2.1 -3.3 FIG00953287: hypothetical protein compare
Pf1N1B4_847 -2.1 -7.4 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_2377 -2.0 -5.9 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_2337 -2.0 -4.6 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_1317 -2.0 -3.5 Sensor histidine kinase/response regulator compare
Pf1N1B4_1625 -2.0 -3.7 FIG00956267: hypothetical protein compare
Pf1N1B4_2280 -1.9 -7.6 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_5330 -1.9 -2.4 hypothetical protein compare
Pf1N1B4_3917 -1.9 -4.3 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf1N1B4_2939 -1.9 -5.8 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf1N1B4_2489 -1.9 -4.4 Biotin synthesis protein BioH compare
Pf1N1B4_1906 -1.9 -3.7 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_5737 -1.8 -3.6 Nitrate/nitrite transporter compare
Pf1N1B4_1566 -1.8 -6.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_1153 -1.7 -3.2 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf1N1B4_1 -1.7 -2.5 Colicin V production protein compare
Pf1N1B4_866 -1.7 -2.5 Iron-sulfur cluster regulator IscR compare
Pf1N1B4_5926 -1.7 -10.2 hypothetical protein compare
Pf1N1B4_2209 -1.7 -7.4 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_5311 -1.6 -2.8 hypothetical protein compare
Pf1N1B4_626 -1.6 -6.6 Quinolinate synthetase (EC 2.5.1.72) compare
Pf1N1B4_1329 -1.6 -5.8 Cobalamin biosynthesis protein CobG compare
Pf1N1B4_27 -1.6 -4.0 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf1N1B4_72 -1.6 -2.4 Transcriptional regulator, LysR family compare
Pf1N1B4_1328 -1.6 -3.1 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf1N1B4_2380 -1.6 -9.9 Cytochrome B561 compare
Pf1N1B4_2381 -1.5 -9.7 Protein yceI precursor compare
Pf1N1B4_2486 -1.5 -1.9 hypothetical protein compare
Pf1N1B4_3152 -1.5 -5.3 LysR family transcriptional regulator PA3398 compare
Pf1N1B4_3906 -1.5 -4.3 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_2490 -1.5 -5.0 Biotin synthesis protein BioC compare
Pf1N1B4_232 -1.5 -2.7 DNA-binding response regulator, LuxR family compare
Pf1N1B4_3833 -1.5 -6.5 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_5925 -1.4 -7.6 hypothetical protein compare
Pf1N1B4_4111 -1.4 -3.0 Panthothenate synthetase compare
Pf1N1B4_1475 -1.4 -6.1 FIG00962376: hypothetical protein compare
Pf1N1B4_683 -1.4 -4.1 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_2858 -1.4 -7.7 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_578 -1.4 -3.1 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_652 -1.4 -7.6 Sensory box histidine kinase compare
Pf1N1B4_5899 -1.4 -2.1 FIG00954746: hypothetical protein compare
Pf1N1B4_3081 -1.3 -11.2 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_2401 -1.3 -1.7 Lipoprotein, putative compare
Pf1N1B4_2912 -1.2 -1.7 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_4212 -1.2 -2.3 Gfa-like protein compare
Pf1N1B4_4857 -1.2 -4.2 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_1611 -1.2 -4.0 Nitrogen regulation protein NR(I) compare
Pf1N1B4_3487 -1.2 -4.7 Aerobic C4-dicarboxylate transporter for fumarate, L-malate, D-malate, succunate, aspartate compare
Pf1N1B4_399 -1.2 -2.2 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) compare
Pf1N1B4_2856 -1.2 -3.1 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_1065 -1.2 -4.9 Histidinol-phosphate aminotransferase (EC 2.6.1.9) compare
Pf1N1B4_1666 -1.2 -3.8 C4-dicarboxylate transport transcriptional regulatory protein compare
Pf1N1B4_1610 -1.2 -2.9 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf1N1B4_5224 -1.2 -1.7 tRNA-Arg-CCT compare
Pf1N1B4_1545 -1.2 -6.2 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf1N1B4_5659 -1.2 -7.6 NfuA Fe-S protein maturation compare
Pf1N1B4_649 -1.1 -3.0 Small-conductance mechanosensitive channel compare
Pf1N1B4_3006 -1.1 -4.2 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf1N1B4_885 -1.1 -2.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_617 -1.1 -1.9 Carbamate kinase (EC 2.7.2.2) compare
Pf1N1B4_3715 -1.1 -3.3 Cobalamin synthase compare
Pf1N1B4_4417 -1.1 -2.0 Transcriptional regulator compare
Pf1N1B4_1116 -1.1 -7.3 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf1N1B4_5949 -1.1 -1.8 Phosphomannomutase (EC 5.4.2.8) compare
Pf1N1B4_3098 -1.1 -2.6 Ribonuclease HII (EC 3.1.26.4) compare
Pf1N1B4_1613 -1.1 -1.6 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) compare
Pf1N1B4_1057 -1.1 -2.1 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_373 -1.1 -2.5 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC compare
Pf1N1B4_1535 -1.0 -1.9 hypothetical protein compare
Pf1N1B4_4517 -1.0 -2.3 Dihydropyrimidinase (EC 3.5.2.2) compare
Pf1N1B4_4523 -1.0 -2.0 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_722 -1.0 -1.7 SAM-dependent methyltransferases compare
Pf1N1B4_4320 -1.0 -2.5 Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1) compare
Pf1N1B4_5554 -1.0 -1.6 hypothetical protein compare
Pf1N1B4_4257 -1.0 -1.9 L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17) @ Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_3711 -1.0 -4.3 Cobyric acid synthase (EC 6.3.5.10) compare
Pf1N1B4_1069 -1.0 -4.0 YrbA protein compare
Pf1N1B4_4847 -1.0 -2.1 Various polyols ABC transporter, ATP-binding component compare
Pf1N1B4_5976 -1.0 -1.9 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) compare
Pf1N1B4_3368 -1.0 -1.7 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf1N1B4_4225 -1.0 -2.6 transcriptional regulator, AraC family compare
Pf1N1B4_1327 -1.0 -5.4 Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) compare
Pf1N1B4_1326 -1.0 -3.8 Cobalamin biosynthesis protein CbiG / Cobalt-precorrin-3b C17-methyltransferase compare
Pf1N1B4_1554 -1.0 -4.2 predicted FeS cluster maintenance protein (from data) compare
Pf1N1B4_5834 -1.0 -1.6 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Pf1N1B4_3279 -1.0 -1.5 putative membrane protein compare
Pf1N1B4_3546 -1.0 -1.6 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein compare
Pf1N1B4_1331 -1.0 -2.4 Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) compare
Pf1N1B4_35 -1.0 -1.7 hypothetical protein compare
Pf1N1B4_3707 -1.0 -4.7 Cobyrinic acid A,C-diamide synthase compare
Pf1N1B4_372 -1.0 -2.1 UDP-galactose-lipid carrier transferase (EC 2.-.-.-) compare
Pf1N1B4_3078 -1.0 -1.9 FIG138056: a glutathione-dependent thiol reductase compare
Pf1N1B4_644 -1.0 -1.2 Cold shock protein CspC compare
Pf1N1B4_507 -1.0 -1.5 FIG00956448: hypothetical protein compare
Pf1N1B4_5769 -1.0 -1.6 Heme d1 biosynthesis protein NirL compare
Pf1N1B4_4134 -1.0 -2.0 Na+ driven multidrug efflux pump compare
Pf1N1B4_5927 -1.0 -8.0 Capsular polysaccharide biosynthesis protein compare
Pf1N1B4_2983 -1.0 -2.3 hypothetical protein compare
Pf1N1B4_1540 -0.9 -2.6 Type IV pilus biogenesis protein PilP compare
Pf1N1B4_1115 -0.9 -5.5 Dna binding response regulator PrrA (RegA) compare
Pf1N1B4_5425 -0.9 -1.8 DNA-binding protein HU-beta compare
Pf1N1B4_5777 -0.9 -1.9 Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL compare
Pf1N1B4_2969 -0.9 -6.4 ATPase, AFG1 family compare
Pf1N1B4_4612 -0.9 -1.6 FIG00954117: hypothetical protein compare
Pf1N1B4_4437 -0.9 -2.3 hypothetical protein compare
Pf1N1B4_2874 -0.9 -1.9 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_3518 -0.9 -1.6 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_1403 -0.9 -4.1 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_5063 -0.9 -1.5 Phosphoribosyl transferase domain protein compare
Pf1N1B4_1234 -0.9 -2.7 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_2479 -0.9 -1.8 Glycine cleavage system transcriptional antiactivator GcvR compare
Pf1N1B4_4992 -0.9 -3.0 Dienelactone hydrolase and related enzymes compare
Pf1N1B4_3710 -0.9 -2.7 L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) compare
Pf1N1B4_4887 -0.9 -1.6 Pirin compare
Pf1N1B4_4624 -0.9 -2.2 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) compare
Pf1N1B4_2352 -0.9 -3.4 Glutathione synthetase (EC 6.3.2.3) compare
Pf1N1B4_3451 -0.9 -2.1 Aspartokinase (EC 2.7.2.4) compare
Pf1N1B4_5386 -0.9 -1.8 hypothetical protein compare
Pf1N1B4_883 -0.8 -1.4 Hypothetical nudix hydrolase YeaB compare
Pf1N1B4_2859 -0.8 -6.3 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_611 -0.8 -1.9 CoA transferase, CAIB/BAIF family compare
Pf1N1B4_5079 -0.8 -3.2 Ferrichrome-iron receptor compare
Pf1N1B4_4477 -0.8 -1.8 Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase (EC 1.8.1.4) compare
Pf1N1B4_4585 -0.8 -1.7 Putative Isoquinoline 1-oxidoreductase subunit, Mll3835 protein compare
Pf1N1B4_4219 -0.8 -1.9 FIG01074225: hypothetical protein compare
Pf1N1B4_4627 -0.8 -1.8 FIG00957600: hypothetical protein compare
Pf1N1B4_5658 -0.8 -2.6 Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) compare
Pf1N1B4_1570 -0.8 -2.3 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
Pf1N1B4_3339 -0.8 -3.2 Transcriptional regulator, LysR family compare
Pf1N1B4_3322 -0.8 -4.8 L-aspartate oxidase (EC 1.4.3.16) compare
Pf1N1B4_4140 -0.8 -1.8 hypothetical protein compare
Pf1N1B4_4195 -0.8 -2.5 Transcriptional regulator, TetR family compare
Pf1N1B4_3657 -0.8 -2.1 Pyruvate kinase (EC 2.7.1.40) compare
Pf1N1B4_5661 -0.8 -3.9 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) compare
Pf1N1B4_3036 -0.8 -1.6 Chemotaxis signal transduction protein compare
Pf1N1B4_4931 -0.8 -1.6 Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.79) compare
Pf1N1B4_3818 -0.8 -1.4 Propionate catabolism operon transcriptional regulator of GntR family [predicted] compare
Pf1N1B4_2273 -0.8 -2.9 hypothetical protein compare
Pf1N1B4_78 -0.8 -1.9 FIG00956937: hypothetical protein compare
Pf1N1B4_3503 -0.8 -2.7 Two-component response regulator PfeR, enterobactin compare
Pf1N1B4_5720 -0.8 -1.5 hypothetical protein compare
Pf1N1B4_3775 -0.8 -1.5 FIG00956876: hypothetical protein compare
Pf1N1B4_5446 -0.8 -2.2 hypothetical protein compare
Pf1N1B4_5848 -0.8 -3.4 Precorrin-6A synthase (EC 2.1.1.152) compare
Pf1N1B4_5624 -0.8 -2.0 Lipase precursor (EC 3.1.1.3) compare
Pf1N1B4_348 -0.8 -2.3 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf1N1B4_583 -0.8 -1.4 FIG00957748: hypothetical protein compare
Pf1N1B4_4860 -0.8 -1.7 Sensory box sensor histidine kinase/response regulator (EC 2.7.3.-) compare
Pf1N1B4_4166 -0.8 -1.7 Transcriptional regulator, LysR family compare
Pf1N1B4_1181 -0.8 -2.3 UPF0125 protein yfjF compare
Pf1N1B4_3709 -0.8 -2.1 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf1N1B4_3001 -0.8 -2.1 hypothetical protein compare
Pf1N1B4_5266 -0.8 -1.4 hypothetical protein compare
Pf1N1B4_2114 -0.8 -3.3 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf1N1B4_5511 -0.8 -2.4 hypothetical protein compare
Pf1N1B4_198 -0.8 -1.6 FIG137877: Hypothetical protein in pyoverdin gene cluster compare
Pf1N1B4_1125 -0.7 -2.8 Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N1B4 in carbon source experiments

For carbon source L-Malic acid disodium salt monohydrate across organisms