Experiment set4IT065 for Pseudomonas fluorescens FW300-N1B4

Compare to:

L-Malic acid disodium salt monohydrate carbon source

200 most detrimental genes:

  gene name fitness t score description  
Pf1N1B4_761 +1.3 2.9 FIG00954879: hypothetical protein compare
Pf1N1B4_3191 +1.3 2.2 FIG00953505: hypothetical protein compare
Pf1N1B4_4874 +1.2 2.8 hypothetical protein compare
Pf1N1B4_2177 +1.2 1.6 FIG00953342: hypothetical protein compare
Pf1N1B4_4603 +1.1 2.0 hypothetical protein compare
Pf1N1B4_3134 +1.1 2.2 probable tail fiber assembly-like protein compare
Pf1N1B4_5292 +1.1 2.7 hypothetical protein compare
Pf1N1B4_2736 +1.1 2.5 ATP-dependent RNA helicase PA3950 compare
Pf1N1B4_407 +1.1 1.6 ADP-ribosylglycohydrolase YegU (EC 3.2.-.-) compare
Pf1N1B4_4331 +1.1 2.2 Transporter, LysE family compare
Pf1N1B4_3446 +1.0 2.0 Putative GTPases (G3E family) compare
Pf1N1B4_1492 +1.0 1.6 FIG00959437: hypothetical protein compare
Pf1N1B4_2072 +0.9 3.1 Phosphoprotein phosphatase PppA compare
Pf1N1B4_5820 +0.9 2.2 Transcriptional regulator, Cro/CI family compare
Pf1N1B4_2356 +0.9 2.6 hypothetical protein compare
Pf1N1B4_2247 +0.9 2.0 FMN reductase (EC 1.5.1.29) compare
Pf1N1B4_3742 +0.9 1.8 Oxidoreductase, zinc-binding compare
Pf1N1B4_2870 +0.9 1.7 Regulator of competence-specific genes compare
Pf1N1B4_1293 +0.9 2.6 hypothetical protein compare
Pf1N1B4_3764 +0.9 2.0 Allantoicase (EC 3.5.3.4) compare
Pf1N1B4_1430 +0.9 2.1 Predicted signal transduction protein compare
Pf1N1B4_876 +0.8 2.6 Magnesium and cobalt efflux protein CorC compare
Pf1N1B4_5919 +0.8 3.0 Signal transduction response regulator / Tetratricopeptide repeat-containing protein compare
Pf1N1B4_4812 +0.8 2.3 Site-specific recombinase, phage integrase family compare
Pf1N1B4_5708 +0.8 2.4 Transcriptional regulator, TetR family compare
Pf1N1B4_2442 +0.8 1.8 Electron transfer flavoprotein, beta subunit compare
Pf1N1B4_4700 +0.8 1.4 FIG00956898: hypothetical protein compare
Pf1N1B4_3437 +0.8 3.9 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
Pf1N1B4_3909 +0.8 1.5 Cell division inhibitor-related protein compare
Pf1N1B4_4762 +0.8 2.4 hypothetical protein compare
Pf1N1B4_3722 +0.8 1.6 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_4087 +0.8 2.2 MISCELLANEOUS; Unknown compare
Pf1N1B4_5763 +0.8 1.8 Nitric oxide reductase activation protein NorQ compare
Pf1N1B4_5779 +0.8 1.5 Nitrous oxide reductase maturation protein NosF (ATPase) compare
Pf1N1B4_54 +0.8 2.7 Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91) compare
Pf1N1B4_384 +0.8 1.5 proteinase inhibitor compare
Pf1N1B4_5512 +0.8 0.9 hypothetical protein compare
Pf1N1B4_403 +0.8 1.6 FIG00965925: hypothetical protein compare
Pf1N1B4_3794 +0.8 2.1 hypothetical protein compare
Pf1N1B4_5242 +0.8 1.4 hypothetical protein compare
Pf1N1B4_5435 +0.8 1.9 hypothetical protein compare
Pf1N1B4_5759 +0.7 1.9 Nitric-oxide reductase subunit B (EC 1.7.99.7) compare
Pf1N1B4_4974 +0.7 1.7 Protease subunit of ATP-dependent Clp proteases compare
Pf1N1B4_4460 +0.7 1.4 Cytochrome b561 compare
Pf1N1B4_3540 +0.7 2.7 Metal-dependent phosphohydrolase, HD subdomain compare
Pf1N1B4_3625 +0.7 1.8 Flagellar synthesis regulator FleN compare
Pf1N1B4_4349 +0.7 1.9 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) compare
Pf1N1B4_3050 +0.7 2.5 FIG00958830: hypothetical protein compare
Pf1N1B4_1446 +0.7 2.2 Predicted hydroxymethylpyrimidine transporter CytX compare
Pf1N1B4_2193 +0.7 2.0 hypothetical protein compare
Pf1N1B4_5107 +0.7 1.9 Putative collagenase compare
Pf1N1B4_3468 +0.7 1.3 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_164 +0.7 1.4 ADP-ribosylglycohydrolase family protein compare
Pf1N1B4_4429 +0.7 1.2 No significant database matches compare
Pf1N1B4_5870 +0.7 1.4 VgrG protein compare
Pf1N1B4_4571 +0.7 1.7 ADA regulatory protein / Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf1N1B4_5031 +0.7 1.9 Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) compare
Pf1N1B4_5884 +0.7 1.3 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf1N1B4_5803 +0.7 2.3 Catechol 1,2-dioxygenase (EC 1.13.11.1) compare
Pf1N1B4_4029 +0.7 1.6 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_4768 +0.7 2.6 hypothetical protein compare
Pf1N1B4_2178 +0.7 1.0 Regulator of nucleoside diphosphate kinase compare
Pf1N1B4_4473 +0.7 1.3 Homoserine/homoserine lactone efflux protein compare
Pf1N1B4_4393 +0.7 1.0 Ferredoxin reductase compare
Pf1N1B4_5668 +0.7 1.2 Peptidase, U7 family compare
Pf1N1B4_1194 +0.7 1.5 hypothetical protein compare
Pf1N1B4_1094 +0.7 1.6 FIG005080: Possible exported protein compare
Pf1N1B4_4582 +0.7 1.3 hypothetical protein compare
Pf1N1B4_650 +0.7 2.0 FIG001943: hypothetical protein YajQ compare
Pf1N1B4_538 +0.7 1.4 hypothetical protein compare
Pf1N1B4_5282 +0.7 1.9 Phage protein compare
Pf1N1B4_5370 +0.7 1.2 hypothetical protein compare
Pf1N1B4_1370 +0.7 1.0 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf1N1B4_1704 +0.7 2.0 hypothetical protein compare
Pf1N1B4_3954 +0.7 2.7 Hydrolase, carbon-nitrogen family compare
Pf1N1B4_4771 +0.7 1.8 Probable transmembrane protein compare
Pf1N1B4_3415 +0.7 2.0 Transcriptional regulator, TetR family compare
Pf1N1B4_228 +0.7 1.6 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Pf1N1B4_3991 +0.7 1.0 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf1N1B4_3353 +0.7 2.3 putative cytoplasmic protein compare
Pf1N1B4_4220 +0.6 1.4 Maebl compare
Pf1N1B4_3814 +0.6 1.9 Para-aminobenzoate synthase, aminase component (EC 2.6.1.85) compare
Pf1N1B4_2456 +0.6 1.7 Sarcosine oxidase delta subunit (EC 1.5.3.1) compare
Pf1N1B4_152 +0.6 1.6 ABC transporter, permease protein compare
Pf1N1B4_3942 +0.6 1.8 Murein-DD-endopeptidase (EC 3.4.99.-) compare
Pf1N1B4_3241 +0.6 1.1 hypothetical protein compare
Pf1N1B4_695 +0.6 1.3 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf1N1B4_3594 +0.6 1.6 Flagellin protein FlaA compare
Pf1N1B4_5853 +0.6 1.5 Glutamine synthetase (EC 6.3.1.2), putative compare
Pf1N1B4_4343 +0.6 1.3 hypothetical protein compare
Pf1N1B4_218 +0.6 3.0 Periplasmic binding protein compare
Pf1N1B4_4518 +0.6 1.3 Possible pyrimidine permease in reductive pathway compare
Pf1N1B4_2958 +0.6 1.2 Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-) compare
Pf1N1B4_2447 +0.6 2.7 GbcA Glycine betaine demethylase subunit A compare
Pf1N1B4_4145 +0.6 1.1 hypothetical protein compare
Pf1N1B4_2102 +0.6 1.1 hypothetical protein compare
Pf1N1B4_4401 +0.6 1.5 Non-heme chloroperoxidase (EC 1.11.1.10) compare
Pf1N1B4_5801 +0.6 1.6 hypothetical protein compare
Pf1N1B4_4699 +0.6 1.3 Multidrug translocase MdfA compare
Pf1N1B4_5151 +0.6 1.2 FIG002283: Isochorismatase family protein compare
Pf1N1B4_3785 +0.6 0.7 FOG: Ankyrin repeat compare
Pf1N1B4_5187 +0.6 0.9 5S RNA compare
Pf1N1B4_41 +0.6 1.8 hypothetical protein compare
Pf1N1B4_4550 +0.6 1.4 beta-ketoacyl synthase, putative compare
Pf1N1B4_5552 +0.6 1.3 hypothetical protein compare
Pf1N1B4_4932 +0.6 1.5 Tartrate dehydrogenase (EC 1.1.1.93) / Tartrate decarboxylase (EC 4.1.1.73) / D-malic enzyme (EC 1.1.1.83) compare
Pf1N1B4_688 +0.6 1.0 FIG00955483: hypothetical protein compare
Pf1N1B4_2069 +0.6 2.0 Outer membrane protein ImpK/VasF, OmpA/MotB domain compare
Pf1N1B4_5886 +0.6 1.8 Undecaprenyl-phosphate galactosephosphotransferase (EC 2.7.8.6) compare
Pf1N1B4_4869 +0.6 1.6 Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16) compare
Pf1N1B4_2269 +0.6 1.2 Purine nucleoside phosphorylase (EC 2.4.2.1) compare
Pf1N1B4_1755 +0.6 2.1 FIG00955799: hypothetical protein compare
Pf1N1B4_5843 +0.6 1.6 phospholipase/carboxylesterase family protein compare
Pf1N1B4_4894 +0.6 1.7 Nucleoside-diphosphate-sugar epimerases compare
Pf1N1B4_1612 +0.6 1.3 FIG00955429: hypothetical protein compare
Pf1N1B4_3222 +0.6 1.0 Ferredoxin compare
Pf1N1B4_2726 +0.6 2.3 Cobalt-zinc-cadmium resistance protein compare
Pf1N1B4_4250 +0.6 1.2 Methyltransferase (EC 2.1.1.-) compare
Pf1N1B4_1154 +0.6 1.6 FIG00957702: hypothetical protein compare
Pf1N1B4_4980 +0.6 1.1 putative lipoprotein compare
Pf1N1B4_2749 +0.6 2.5 Quinate/shikimate 5-dehydrogenase I delta (EC 1.1.1.25) compare
Pf1N1B4_4521 +0.6 1.5 Probable transmembrane protein compare
Pf1N1B4_338 +0.6 1.5 Alpha-L-Rha alpha-1,3-L-rhamnosyltransferase (EC 2.4.1.-) compare
Pf1N1B4_1608 +0.6 1.6 FIG00956533: hypothetical protein compare
Pf1N1B4_2080 +0.6 1.9 hypothetical protein compare
Pf1N1B4_4937 +0.6 1.8 Two-component hybrid sensor and regulator compare
Pf1N1B4_246 +0.6 2.4 Probable transmembrane protein compare
Pf1N1B4_4736 +0.6 1.2 Fap amyloid fibril minor component compare
Pf1N1B4_3274 +0.6 1.7 Fosfomycin resistance protein FosA compare
Pf1N1B4_5871 +0.6 1.3 FIG00963848: hypothetical protein compare
Pf1N1B4_272 +0.6 1.8 Transcriptional regulator, LysR family compare
Pf1N1B4_4489 +0.6 1.5 Transcriptional regulator, LuxR family compare
Pf1N1B4_5109 +0.6 0.8 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases compare
Pf1N1B4_4035 +0.6 1.0 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_3972 +0.6 1.4 ABC-type spermidine/putrescine transport system, permease component II compare
Pf1N1B4_5056 +0.6 1.7 Uncharacterized glutathione S-transferase-like protein compare
Pf1N1B4_5430 +0.5 1.5 hypothetical protein compare
Pf1N1B4_1501 +0.5 2.3 3-oxoacyl-[ACP] synthase compare
Pf1N1B4_3458 +0.5 1.4 hypothetical protein compare
Pf1N1B4_2154 +0.5 1.4 hypothetical protein compare
Pf1N1B4_1838 +0.5 1.4 FIG00955509: hypothetical protein compare
Pf1N1B4_5096 +0.5 2.0 Nitrate ABC transporter, nitrate-binding protein compare
Pf1N1B4_2791 +0.5 0.9 Putative inner membrane protein (Fragment) compare
Pf1N1B4_3853 +0.5 1.4 Xanthine dehydrogenase iron-sulfur subunit (EC 1.17.1.4) / Xanthine dehydrogenase, FAD binding subunit (EC 1.17.1.4) compare
Pf1N1B4_1849 +0.5 2.0 Carbonic anhydrase (EC 4.2.1.1) compare
Pf1N1B4_491 +0.5 1.8 Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly compare
Pf1N1B4_5265 +0.5 1.7 hypothetical protein compare
Pf1N1B4_1140 +0.5 1.8 Iron-uptake factor PiuC compare
Pf1N1B4_3467 +0.5 1.1 Flagellar biosynthesis protein FlgN compare
Pf1N1B4_5983 +0.5 2.1 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare
Pf1N1B4_3478 +0.5 2.4 Transcriptional regulatory protein RstA compare
Pf1N1B4_2981 +0.5 1.8 hypothetical protein compare
Pf1N1B4_4929 +0.5 1.0 Opine oxidase subunit B compare
Pf1N1B4_5600 +0.5 1.7 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) compare
Pf1N1B4_4333 +0.5 1.2 hypothetical protein compare
Pf1N1B4_998 +0.5 2.0 Membrane fusion component of tripartite multidrug resistance system compare
Pf1N1B4_4542 +0.5 1.7 IcmF-related protein compare
Pf1N1B4_1985 +0.5 2.4 Dihydroorotase (EC 3.5.2.3) compare
Pf1N1B4_756 +0.5 1.1 hypothetical protein compare
Pf1N1B4_3612 +0.5 1.4 Flagellar hook-length control protein FliK compare
Pf1N1B4_4202 +0.5 2.0 4-oxalmesaconate hydratase (EC 4.2.1.83) compare
Pf1N1B4_1252 +0.5 1.8 Adenosine deaminase (EC 3.5.4.4) compare
Pf1N1B4_563 +0.5 1.4 RNA polymerase sigma-70 factor compare
Pf1N1B4_1466 +0.5 2.3 hypothetical protein compare
Pf1N1B4_4632 +0.5 1.4 Exonuclease SbcC compare
Pf1N1B4_2172 +0.5 2.0 Protein of unknown function DUF484 compare
Pf1N1B4_1246 +0.5 1.0 FIG00954047: hypothetical protein compare
Pf1N1B4_6050 +0.5 1.3 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_117 +0.5 2.0 Iron siderophore sensor protein compare
Pf1N1B4_5013 +0.5 1.0 Cointegrate resolution protein T compare
Pf1N1B4_623 +0.5 1.0 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Pf1N1B4_3905 +0.5 1.5 FIG00953423: hypothetical protein compare
Pf1N1B4_3232 +0.5 1.9 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6); Glutaconate CoA-transferase subunit A (EC 2.8.3.12) compare
Pf1N1B4_778 +0.5 2.4 hypothetical protein compare
Pf1N1B4_4650 +0.5 1.8 Aspartate racemase (EC 5.1.1.13) compare
Pf1N1B4_5817 +0.5 0.9 Decarboxylase family protein compare
Pf1N1B4_5972 +0.5 1.0 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) compare
Pf1N1B4_3789 +0.5 1.4 Superfamily II DNA/RNA helicases, SNF2 family compare
Pf1N1B4_4721 +0.5 1.0 Nuclease inhibitor compare
Pf1N1B4_1334 +0.5 0.7 FIG00955840: hypothetical protein compare
Pf1N1B4_3634 +0.5 1.6 CheW domain protein compare
Pf1N1B4_1738 +0.5 2.2 RNA polymerase sigma-54 factor RpoN compare
Pf1N1B4_4076 +0.5 1.1 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf1N1B4_5916 +0.5 1.2 Similar to non-heme chloroperoxidase, sll5080 homolog compare
Pf1N1B4_375 +0.5 2.5 Cyanophycin synthase (EC 6.3.2.29)(EC 6.3.2.30) compare
Pf1N1B4_4359 +0.5 1.2 PvcA protein, related to known isonitrile synthases compare
Pf1N1B4_483 +0.5 0.9 Metal-dependent hydrolase related to alanyl-tRNA synthetase compare
Pf1N1B4_1637 +0.5 0.9 FIG00954739: hypothetical protein compare
Pf1N1B4_3169 +0.5 1.5 methylated-DNA--protein-cysteine methyltransferase-related protein compare
Pf1N1B4_5588 +0.5 1.1 Transcriptional regulator for ferulate or vanillate catabolism compare
Pf1N1B4_4100 +0.5 1.1 probable transmembrane protein compare
Pf1N1B4_3587 +0.5 1.4 N-Acetylneuraminate cytidylyltransferase (EC 2.7.7.43) compare
Pf1N1B4_5740 +0.5 1.7 Nitrate/nitrite sensor protein (EC 2.7.3.-) compare
Pf1N1B4_3588 +0.5 1.0 N-Acetylneuraminate cytidylyltransferase (EC 2.7.7.43) compare
Pf1N1B4_3593 +0.5 1.8 FIG00958084: hypothetical protein compare
Pf1N1B4_2021 +0.5 0.9 hypothetical protein compare
Pf1N1B4_126 +0.5 0.9 Pirin compare
Pf1N1B4_448 +0.5 0.9 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf1N1B4_3200 +0.5 1.4 Outer membrane lipoprotein compare
Pf1N1B4_3864 +0.5 2.5 Recombination protein RecR compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N1B4 in carbon source experiments

For carbon source L-Malic acid disodium salt monohydrate across organisms