Experiment set4IT065 for Bifidobacterium breve UCC2003

Compare to:

Recovery broth with EDTA 2.5 mM

200 most detrimental genes:

  gene name fitness t score description  
BBR_RS19070 +1.7 2.0 50S ribosomal protein L33 compare
BBR_RS10665 +1.6 15.9 DUF2156 domain-containing protein compare
BBR_RS19435 +1.6 3.9 pyridoxal phosphate-dependent aminotransferase compare
BBR_RS14610 +1.5 8.1 DNA-binding response regulator compare
BBR_RS15435 +1.5 6.6 dihydroorotase compare
BBR_RS15455 +1.2 2.2 orotate phosphoribosyltransferase compare
BBR_RS20480 +1.1 1.7 membrane protein compare
BBR_RS13635 +1.0 7.3 carbamoyl-phosphate synthase large subunit compare
BBR_RS13640 +1.0 6.2 orotidine-5'-phosphate decarboxylase compare
BBR_RS20955 +1.0 2.7 hypothetical protein compare
BBR_RS14075 +1.0 7.0 glutamate-5-semialdehyde dehydrogenase compare
BBR_RS18695 +0.9 5.3 PRD domain-containing protein compare
BBR_RS18700 +0.9 8.0 PTS beta-glucoside transporter subunit EIIBCA compare
BBR_RS14600 +0.9 5.7 ABC transporter ATP-binding protein compare
BBR_RS11145 +0.9 2.4 hypothetical protein compare
BBR_RS12905 +0.9 4.0 galactose-1-phosphate uridylyltransferase compare
BBR_RS15695 +0.9 4.5 membrane channel protein compare
BBR_RS12550 +0.9 7.7 sugar transferase compare
BBR_RS14140 +0.9 2.2 Ppx/GppA family phosphatase compare
BBR_RS15440 +0.9 4.7 orotidine-5'-phosphate decarboxylase compare
BBR_RS14715 +0.9 2.0 XRE family transcriptional regulator compare
BBR_RS21055 +0.8 2.0 hypothetical protein compare
BBR_RS16135 +0.8 3.0 peptide deformylase compare
BBR_RS13630 +0.8 4.5 carbamoyl-phosphate synthase small subunit compare
BBR_RS16555 +0.8 0.9 DNA translocase FtsK compare
BBR_RS20105 +0.8 7.4 YhgE/Pip domain-containing protein compare
BBR_RS20100 +0.8 7.5 YhgE/Pip domain-containing protein compare
BBR_RS17415 +0.8 2.4 hypothetical protein compare
BBR_RS15085 +0.8 0.8 3-dehydroquinate synthase compare
BBR_RS13715 +0.8 4.1 DUF3107 domain-containing protein compare
BBR_RS14370 +0.8 3.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
BBR_RS12620 +0.8 5.6 glycosyltransferase family 1 protein compare
BBR_RS11210 +0.7 6.5 phosphoenolpyruvate--protein phosphotransferase compare
BBR_RS14085 +0.7 2.2 nicotinate-nucleotide adenylyltransferase compare
BBR_RS16640 +0.7 2.9 ABC transporter permease compare
BBR_RS10285 +0.7 1.0 membrane protein compare
BBR_RS14070 +0.7 3.7 threonine synthase compare
BBR_RS12355 +0.7 3.0 ribonuclease III compare
BBR_RS11205 +0.7 4.4 HPr family phosphocarrier protein compare
BBR_RS16635 +0.7 1.9 ABC transporter ATP-binding protein compare
BBR_RS20800 +0.6 1.8 hypothetical protein compare
BBR_RS13435 +0.6 4.9 hypothetical protein compare
BBR_RS14605 +0.6 5.2 ABC transporter permease compare
BBR_RS14015 +0.6 2.1 hypothetical protein compare
BBR_RS17685 +0.6 2.1 hypothetical protein compare
BBR_RS13430 +0.6 4.2 hypothetical protein compare
BBR_RS20930 +0.6 1.1 hypothetical protein compare
BBR_RS14850 +0.6 1.3 VOC family protein compare
BBR_RS16535 +0.5 2.1 DUF3046 domain-containing protein compare
BBR_RS19115 +0.5 2.4 hypothetical protein compare
BBR_RS15080 +0.5 1.7 chorismate synthase compare
BBR_RS17905 +0.5 5.2 2-hydroxyglutaryl-CoA dehydratase activator compare
BBR_RS15520 +0.5 1.9 shikimate 5-dehydrogenase compare
BBR_RS13840 +0.5 1.7 DUF3043 domain-containing protein compare
BBR_RS15180 +0.5 3.6 long-chain fatty acid--CoA ligase compare
BBR_RS20810 +0.5 1.8 pirin compare
BBR_RS12855 +0.5 2.4 glycine cleavage system protein H compare
BBR_RS15920 +0.5 1.5 type II toxin-antitoxin system YafQ family toxin compare
BBR_RS19375 +0.5 0.6 acyl-CoA carboxylase subunit beta compare
BBR_RS14485 +0.5 2.7 DUF3000 domain-containing protein compare
BBR_RS21040 +0.4 2.0 transcription factor WhiB compare
BBR_RS16525 +0.4 2.7 RecX family transcriptional regulator compare
BBR_RS12720 +0.4 1.3 hypothetical protein compare
BBR_RS13625 +0.4 1.3 transcription antitermination factor NusB compare
BBR_RS14490 +0.4 2.9 ribonuclease D compare
BBR_RS15755 +0.4 0.6 hypothetical protein compare
BBR_RS13730 +0.4 3.3 hypothetical protein compare
BBR_RS14080 +0.4 1.2 hypothetical protein compare
BBR_RS14865 +0.4 2.8 haloacid dehalogenase-like hydrolase compare
BBR_RS13450 +0.4 1.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BBR_RS20200 +0.4 3.9 alpha-galactosidase compare
BBR_RS16155 +0.4 3.3 isocitrate dehydrogenase (NADP(+)) compare
BBR_RS15750 +0.4 0.8 hypothetical protein compare
BBR_RS20790 +0.4 1.7 hypothetical protein compare
BBR_RS20095 +0.4 3.4 NADPH-dependent oxidoreductase compare
BBR_RS15760 +0.4 1.4 MerR family transcriptional regulator compare
BBR_RS15450 +0.4 1.9 dihydroorotate dehydrogenase compare
BBR_RS11340 +0.4 2.8 TetR/AcrR family transcriptional regulator compare
BBR_RS18330 +0.4 3.2 PIN domain-containing protein compare
BBR_RS12715 +0.4 2.2 helix-turn-helix domain-containing protein compare
BBR_RS16820 +0.4 1.3 RNA polymerase sigma factor RpoE compare
BBR_RS18645 +0.4 2.9 DNA-binding response regulator compare
BBR_RS16600 +0.4 3.0 aconitate hydratase AcnA compare
BBR_RS19680 +0.4 3.1 uracil phosphoribosyltransferase compare
BBR_RS16890 +0.4 1.3 glucose/galactose transporter compare
BBR_RS17475 +0.4 2.0 cold-shock protein compare
BBR_RS15975 +0.4 2.4 hypothetical protein compare
BBR_RS15425 +0.4 1.1 aspartate carbamoyltransferase compare
BBR_RS14495 +0.4 1.3 trigger factor compare
BBR_RS13455 +0.4 1.2 formate-dependent phosphoribosylglycinamide formyltransferase compare
BBR_RS16685 +0.4 1.0 alcohol dehydrogenase compare
BBR_RS16520 +0.4 2.4 ribosome-associated translation inhibitor RaiA compare
BBR_RS12440 +0.3 3.0 Permease of ABC transporter system compare
BBR_RS12560 +0.3 2.0 transposase compare
BBR_RS13610 +0.3 2.6 iron export ABC transporter permease subunit FetB compare
BBR_RS17940 +0.3 2.4 large conductance mechanosensitive channel protein MscL compare
BBR_RS15445 +0.3 2.0 dihydroorotate dehydrogenase electron transfer subunit compare
BBR_RS14840 +0.3 1.8 IS3 family transposase compare
BBR_RS17875 +0.3 2.1 glucan 1,3-beta-glucosidase compare
BBR_RS18045 +0.3 0.6 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BBR_RS20830 +0.3 1.4 hypothetical protein compare
BBR_RS19370 +0.3 1.6 type I polyketide synthase compare
BBR_RS15970 +0.3 1.5 hypothetical protein compare
BBR_RS16940 +0.3 1.2 hypothetical protein compare
BBR_RS14160 +0.3 1.3 peptidylprolyl isomerase compare
BBR_RS20435 +0.3 0.4 CCA tRNA nucleotidyltransferase compare
BBR_RS17115 +0.3 1.9 aldo/keto reductase compare
BBR_RS19290 +0.3 2.0 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
BBR_RS14625 +0.3 1.6 pyrroline-5-carboxylate reductase compare
BBR_RS16670 +0.3 2.0 hypothetical protein compare
BBR_RS13820 +0.3 0.7 ATP-binding protein compare
BBR_RS17150 +0.3 1.7 YggT family protein compare
BBR_RS17165 +0.3 2.3 tRNA dihydrouridine synthase DusB compare
BBR_RS10905 +0.3 1.6 nucleotide exchange factor GrpE compare
BBR_RS17030 +0.3 1.5 bifunctional 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide isomerase/phosphoribosylanthranilate isomerase PriA compare
BBR_RS17035 +0.3 2.0 imidazole glycerol phosphate synthase subunit HisH compare
BBR_RS15130 +0.3 1.0 metal-sulfur cluster assembly factor compare
BBR_RS13195 +0.3 1.6 pyridoxal 5'-phosphate synthase lyase subunit PdxS compare
BBR_RS12305 +0.3 1.7 endonuclease/exonuclease/phosphatase family protein compare
BBR_RS15370 +0.3 0.7 macro domain-containing protein compare
BBR_RS20030 +0.3 2.0 IS5/IS1182 family transposase compare
BBR_RS16330 +0.3 1.9 LacI family transcriptional regulator compare
BBR_RS17080 +0.3 1.9 hypothetical protein compare
BBR_RS20085 +0.3 1.9 histidine phosphatase family protein compare
BBR_RS16015 +0.3 1.0 DUF2089 domain-containing protein compare
BBR_RS19190 +0.3 1.5 3-deoxy-7-phosphoheptulonate synthase compare
BBR_RS11300 +0.3 1.8 hypothetical protein compare
BBR_RS12435 +0.3 2.3 ABC transporter ATP-binding protein compare
BBR_RS13070 +0.3 0.5 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
BBR_RS15940 +0.3 1.3 hypothetical protein compare
BBR_RS19445 +0.3 2.4 glutamate 5-kinase compare
BBR_RS13440 +0.3 2.1 alpha/beta hydrolase compare
BBR_RS18470 +0.3 2.0 MFS transporter compare
BBR_RS20630 +0.3 1.2 transposase compare
BBR_RS16955 +0.3 0.8 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
BBR_RS16105 +0.3 1.5 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
BBR_RS20610 +0.3 2.2 hypothetical protein compare
BBR_RS14105 +0.3 1.7 N-acetyltransferase compare
BBR_RS16200 +0.3 1.7 zinc ribbon domain-containing protein compare
BBR_RS18745 +0.3 0.5 bifunctional riboflavin kinase/FMN adenylyltransferase compare
BBR_RS13905 +0.2 1.4 ornithine carbamoyltransferase compare
BBR_RS17640 +0.2 0.3 DNA-directed RNA polymerase subunit omega compare
BBR_RS12540 +0.2 2.1 MFS transporter compare
BBR_RS13160 +0.2 1.8 serine O-acetyltransferase compare
BBR_RS15190 +0.2 1.3 NAD(P) transhydrogenase subunit alpha compare
BBR_RS16675 +0.2 1.0 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
BBR_RS17900 +0.2 1.9 glutamate--cysteine ligase compare
BBR_RS20665 +0.2 1.1 hypothetical protein compare
BBR_RS21060 +0.2 1.2 hypothetical protein compare
BBR_RS19540 +0.2 0.8 homoserine dehydrogenase compare
BBR_RS15670 +0.2 0.9 adenine phosphoribosyltransferase compare
BBR_RS11975 +0.2 1.3 hypothetical protein compare
BBR_RS12900 +0.2 0.8 DeoR/GlpR transcriptional regulator compare
BBR_RS16540 +0.2 1.3 XRE family transcriptional regulator compare
BBR_RS14050 +0.2 1.7 ABC transporter ATP-binding protein compare
BBR_RS18120 +0.2 0.7 hypothetical protein compare
BBR_RS12055 +0.2 1.8 thioredoxin compare
BBR_RS16070 +0.2 0.8 hypothetical protein compare
BBR_RS20655 +0.2 1.2 hypothetical protein compare
BBR_RS10750 +0.2 2.0 class II fructose-bisphosphate aldolase compare
BBR_RS17945 +0.2 1.3 nucleoside deoxyribosyltransferase compare
BBR_RS15465 +0.2 1.3 DUF2974 domain-containing protein compare
BBR_RS18625 +0.2 1.9 alpha/beta hydrolase compare
BBR_RS13985 +0.2 1.0 membrane protein compare
BBR_RS15490 +0.2 1.3 short-chain dehydrogenase compare
BBR_RS20615 +0.2 1.1 GNAT family N-acetyltransferase compare
BBR_RS11770 +0.2 0.8 chorismate mutase compare
BBR_RS20775 +0.2 0.6 DUF4230 domain-containing protein compare
BBR_RS16175 +0.2 0.9 DNA integration/recombination/inversion protein compare
BBR_RS14930 +0.2 1.3 DNA-binding protein, also contains divergent AAA domain for ATP binding (DNA helicase) compare
BBR_RS14970 +0.2 0.7 transcriptional regulator compare
BBR_RS16445 +0.2 1.1 hypothetical protein compare
BBR_RS15915 +0.2 0.2 type II toxin-antitoxin system antitoxin, RelB/DinJ family compare
BBR_RS13325 +0.2 0.8 hypothetical protein compare
BBR_RS20770 +0.2 1.0 30S ribosomal protein S14 compare
BBR_RS20040 +0.2 1.9 amino acid permease compare
BBR_RS20700 +0.2 0.5 ribulose phosphate epimerase compare
BBR_RS15300 +0.2 0.9 peroxiredoxin compare
BBR_RS13235 +0.2 1.0 hypothetical protein compare
BBR_RS14120 +0.2 1.4 aldo/keto reductase compare
BBR_RS18795 +0.2 0.6 tRNA pseudouridine(38-40) synthase TruA compare
BBR_RS15745 +0.2 0.8 hydrolase or phosphatase compare
BBR_RS18610 +0.2 1.5 MFS transporter compare
BBR_RS20680 +0.2 0.8 hypothetical protein compare
BBR_RS15385 +0.2 0.7 hypothetical protein compare
BBR_RS12225 +0.2 1.2 hypothetical protein compare
BBR_RS16150 +0.2 1.3 GuaB3 family IMP dehydrogenase-related protein compare
BBR_RS16170 +0.2 0.7 hypothetical protein compare
BBR_RS20545 +0.2 1.1 hypothetical protein compare
BBR_RS14765 +0.2 0.1 hypothetical protein compare
BBR_RS17260 +0.2 1.2 Sucrose permease compare
BBR_RS12375 +0.2 0.3 pantetheine-phosphate adenylyltransferase compare
BBR_RS16085 +0.2 1.3 anthranilate synthase component I compare
BBR_RS15715 +0.2 1.1 Cof-type HAD-IIB family hydrolase compare
BBR_RS11625 +0.2 1.3 transposase compare
BBR_RS18595 +0.2 1.6 1,4-dihydroxy-2-naphthoate octaprenyltransferase compare
BBR_RS21020 +0.2 1.1 transposase compare
BBR_RS14325 +0.2 1.2 NUDIX hydrolase compare
BBR_RS16805 +0.2 1.4 aldose 1-epimerase compare
BBR_RS15355 +0.2 0.7 DUF3800 domain-containing protein compare


Specific Phenotypes

For 1 genes in this experiment

For stress EDTA in Bifidobacterium breve UCC2003

For stress EDTA across organisms