Experiment set4IT064 for Pseudomonas fluorescens FW300-N1B4

Compare to:

Tween 20 carbon source

200 most detrimental genes:

  gene name fitness t score description  
Pf1N1B4_2177 +1.5 2.1 FIG00953342: hypothetical protein compare
Pf1N1B4_3134 +1.4 2.8 probable tail fiber assembly-like protein compare
Pf1N1B4_2736 +1.2 2.7 ATP-dependent RNA helicase PA3950 compare
Pf1N1B4_4051 +1.2 3.4 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf1N1B4_6041 +1.2 2.0 Carbon storage regulator compare
Pf1N1B4_5763 +1.1 2.7 Nitric oxide reductase activation protein NorQ compare
Pf1N1B4_407 +1.1 1.7 ADP-ribosylglycohydrolase YegU (EC 3.2.-.-) compare
Pf1N1B4_695 +1.1 2.5 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf1N1B4_761 +1.1 2.3 FIG00954879: hypothetical protein compare
Pf1N1B4_3605 +1.1 2.0 Flagellar motor switch protein FliG compare
Pf1N1B4_2008 +1.0 7.3 Phosphogluconate repressor HexR, RpiR family compare
Pf1N1B4_2244 +1.0 2.3 Taurine-binding periplasmic protein TauA compare
Pf1N1B4_2635 +1.0 2.0 hypothetical protein compare
Pf1N1B4_2224 +0.9 1.9 FIG00953390: hypothetical protein compare
Pf1N1B4_5871 +0.9 2.3 FIG00963848: hypothetical protein compare
Pf1N1B4_2355 +0.9 3.7 type IV pili signal transduction protein PilI compare
Pf1N1B4_3485 +0.9 1.8 hypothetical protein compare
Pf1N1B4_1246 +0.9 1.9 FIG00954047: hypothetical protein compare
Pf1N1B4_5668 +0.9 2.0 Peptidase, U7 family compare
Pf1N1B4_3800 +0.9 2.1 Enoyl-CoA hydratase/isomerase family protein compare
Pf1N1B4_5820 +0.9 2.2 Transcriptional regulator, Cro/CI family compare
Pf1N1B4_4349 +0.9 2.5 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) compare
Pf1N1B4_3191 +0.9 1.4 FIG00953505: hypothetical protein compare
Pf1N1B4_2106 +0.9 2.5 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_2247 +0.9 2.0 FMN reductase (EC 1.5.1.29) compare
Pf1N1B4_1140 +0.9 3.5 Iron-uptake factor PiuC compare
Pf1N1B4_4755 +0.9 1.9 ribosomal protein S6 glutaminyl transferase related protein compare
Pf1N1B4_3909 +0.9 1.8 Cell division inhibitor-related protein compare
Pf1N1B4_3795 +0.9 1.7 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf1N1B4_3843 +0.9 3.0 Ribosome modulation factor compare
Pf1N1B4_3587 +0.9 2.6 N-Acetylneuraminate cytidylyltransferase (EC 2.7.7.43) compare
Pf1N1B4_4869 +0.9 2.5 Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16) compare
Pf1N1B4_2412 +0.9 2.9 ATP-dependent 23S rRNA helicase DbpA compare
Pf1N1B4_1388 +0.9 2.6 Azurin compare
Pf1N1B4_5289 +0.9 2.1 hypothetical protein compare
Pf1N1B4_5803 +0.9 3.0 Catechol 1,2-dioxygenase (EC 1.13.11.1) compare
Pf1N1B4_4929 +0.9 1.7 Opine oxidase subunit B compare
Pf1N1B4_2071 +0.8 1.7 Protein phosphatase ImpM compare
Pf1N1B4_4700 +0.8 1.4 FIG00956898: hypothetical protein compare
Pf1N1B4_3222 +0.8 1.4 Ferredoxin compare
Pf1N1B4_218 +0.8 4.2 Periplasmic binding protein compare
Pf1N1B4_2925 +0.8 2.0 hypothetical protein compare
Pf1N1B4_1353 +0.8 2.9 Urease alpha subunit (EC 3.5.1.5) compare
Pf1N1B4_5269 +0.8 1.9 hypothetical protein compare
Pf1N1B4_1870 +0.8 2.1 Zinc ABC transporter, ATP-binding protein ZnuC compare
Pf1N1B4_846 +0.8 1.5 hypothetical protein compare
Pf1N1B4_675 +0.8 1.8 hypothetical protein compare
Pf1N1B4_2357 +0.8 5.3 type IV pilus biogenesis protein PilJ compare
Pf1N1B4_4571 +0.8 1.9 ADA regulatory protein / Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf1N1B4_5576 +0.8 1.7 hypothetical protein compare
Pf1N1B4_4937 +0.8 2.4 Two-component hybrid sensor and regulator compare
Pf1N1B4_5884 +0.8 1.5 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf1N1B4_5105 +0.8 1.7 Peptide ABC transporter, ATP-binding protein compare
Pf1N1B4_3561 +0.8 2.9 Xanthine transporter,putative compare
Pf1N1B4_4429 +0.8 1.3 No significant database matches compare
Pf1N1B4_4087 +0.7 2.0 MISCELLANEOUS; Unknown compare
Pf1N1B4_4874 +0.7 1.4 hypothetical protein compare
Pf1N1B4_603 +0.7 2.2 Methylglyoxal synthase (EC 4.2.3.3) compare
Pf1N1B4_5275 +0.7 1.8 hypothetical protein compare
Pf1N1B4_4505 +0.7 1.8 Coenzyme PQQ synthesis protein E compare
Pf1N1B4_3920 +0.7 2.0 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) compare
Pf1N1B4_5736 +0.7 2.1 Nitrate/nitrite transporter compare
Pf1N1B4_4043 +0.7 1.9 Type II and III secretion system family protein compare
Pf1N1B4_1334 +0.7 1.3 FIG00955840: hypothetical protein compare
Pf1N1B4_2442 +0.7 1.5 Electron transfer flavoprotein, beta subunit compare
Pf1N1B4_4771 +0.7 1.6 Probable transmembrane protein compare
Pf1N1B4_2975 +0.7 1.1 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) compare
Pf1N1B4_16 +0.7 2.0 Cys regulon transcriptional activator CysB compare
Pf1N1B4_409 +0.7 2.8 ABC transporter for D-galactose/L-arabinose, permease component (from data) compare
Pf1N1B4_5433 +0.7 2.0 hypothetical protein compare
Pf1N1B4_1755 +0.7 2.5 FIG00955799: hypothetical protein compare
Pf1N1B4_483 +0.7 1.3 Metal-dependent hydrolase related to alanyl-tRNA synthetase compare
Pf1N1B4_1017 +0.7 2.8 FIG00957554: hypothetical protein compare
Pf1N1B4_4091 +0.7 2.4 Probable signal peptide protein compare
Pf1N1B4_919 +0.7 1.2 hypothetical protein compare
Pf1N1B4_3129 +0.7 1.0 Prophage baseplate assembly protein V compare
Pf1N1B4_1456 +0.7 3.9 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf1N1B4_2413 +0.7 1.9 Permeases of the major facilitator superfamily compare
Pf1N1B4_688 +0.7 1.2 FIG00955483: hypothetical protein compare
Pf1N1B4_3591 +0.7 3.9 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) compare
Pf1N1B4_4823 +0.7 1.9 Paraquat-inducible protein A compare
Pf1N1B4_5552 +0.7 1.5 hypothetical protein compare
Pf1N1B4_1576 +0.7 2.4 Lipolytic enzyme compare
Pf1N1B4_3722 +0.7 1.6 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_3316 +0.7 1.8 Tricarboxylate transport transcriptional regulator TctD compare
Pf1N1B4_1993 +0.7 1.1 C4-type zinc finger protein, DksA/TraR family compare
Pf1N1B4_969 +0.6 6.2 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf1N1B4_1154 +0.6 1.8 FIG00957702: hypothetical protein compare
Pf1N1B4_2269 +0.6 1.4 Purine nucleoside phosphorylase (EC 2.4.2.1) compare
Pf1N1B4_3111 +0.6 1.0 tRNA pseudouridine 13 synthase (EC 4.2.1.-) compare
Pf1N1B4_4592 +0.6 1.2 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf1N1B4_4721 +0.6 1.7 Nuclease inhibitor compare
Pf1N1B4_4104 +0.6 1.5 Probable transmembrane protein compare
Pf1N1B4_4393 +0.6 1.1 Ferredoxin reductase compare
Pf1N1B4_2102 +0.6 1.1 hypothetical protein compare
Pf1N1B4_4303 +0.6 1.8 DipZ protein compare
Pf1N1B4_5604 +0.6 1.5 Permeases of the major facilitator superfamily compare
Pf1N1B4_3346 +0.6 2.6 Protein YcgL compare
Pf1N1B4_5843 +0.6 1.7 phospholipase/carboxylesterase family protein compare
Pf1N1B4_5588 +0.6 1.4 Transcriptional regulator for ferulate or vanillate catabolism compare
Pf1N1B4_973 +0.6 5.7 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf1N1B4_2021 +0.6 1.2 hypothetical protein compare
Pf1N1B4_4103 +0.6 0.9 Flagellar synthesis regulator FleN compare
Pf1N1B4_5590 +0.6 1.2 Trans-feruloyl-CoA synthase (EC 6.2.1.34) compare
Pf1N1B4_972 +0.6 5.6 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf1N1B4_4894 +0.6 1.8 Nucleoside-diphosphate-sugar epimerases compare
Pf1N1B4_1974 +0.6 1.5 L-lysine permease compare
Pf1N1B4_739 +0.6 2.0 Endonuclease III (EC 4.2.99.18) compare
Pf1N1B4_2835 +0.6 2.2 hypothetical protein compare
Pf1N1B4_5813 +0.6 1.1 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) compare
Pf1N1B4_5330 +0.6 1.2 hypothetical protein compare
Pf1N1B4_4741 +0.6 1.4 Undecaprenyl-diphosphatase (EC 3.6.1.27) compare
Pf1N1B4_4521 +0.6 1.6 Probable transmembrane protein compare
Pf1N1B4_2664 +0.6 2.1 Fic family protein compare
Pf1N1B4_5265 +0.6 1.8 hypothetical protein compare
Pf1N1B4_4108 +0.6 1.2 Hydrolase, alpha/beta fold family compare
Pf1N1B4_2411 +0.6 1.1 FIG00953568: hypothetical protein compare
Pf1N1B4_384 +0.6 1.1 proteinase inhibitor compare
Pf1N1B4_1584 +0.6 1.3 Histidine ABC transporter, permease protein (TC 3.A.1) compare
Pf1N1B4_1370 +0.6 0.9 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf1N1B4_2314 +0.6 1.2 FIG028932: hypothetical protein compare
Pf1N1B4_3179 +0.6 2.8 Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) compare
Pf1N1B4_5629 +0.6 2.1 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf1N1B4_5292 +0.6 1.2 hypothetical protein compare
Pf1N1B4_89 +0.6 2.4 Uncharacterized GST-like protein yncG compare
Pf1N1B4_3435 +0.6 1.1 ABC transporter for L-Arginine and L-Citrulline, ATPase component (from data) compare
Pf1N1B4_650 +0.6 1.6 FIG001943: hypothetical protein YajQ compare
Pf1N1B4_3119 +0.6 1.3 Holin compare
Pf1N1B4_3804 +0.6 2.1 Glycine-rich cell wall structural protein precursor compare
Pf1N1B4_1636 +0.6 0.8 FIG00954739: hypothetical protein compare
Pf1N1B4_2980 +0.5 1.6 Acetylornithine aminotransferase (EC 2.6.1.11) compare
Pf1N1B4_5527 +0.5 1.8 hypothetical protein compare
Pf1N1B4_4488 +0.5 1.9 Sensory box histidine kinase/response regulator compare
Pf1N1B4_998 +0.5 2.1 Membrane fusion component of tripartite multidrug resistance system compare
Pf1N1B4_1990 +0.5 2.6 GTP cyclohydrolase I (EC 3.5.4.16) type 2 compare
Pf1N1B4_3983 +0.5 1.6 cI compare
Pf1N1B4_1207 +0.5 1.7 Transcriptional regulator, LysR family compare
Pf1N1B4_3585 +0.5 1.5 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) compare
Pf1N1B4_4768 +0.5 2.0 hypothetical protein compare
Pf1N1B4_2178 +0.5 0.7 Regulator of nucleoside diphosphate kinase compare
Pf1N1B4_1838 +0.5 1.6 FIG00955509: hypothetical protein compare
Pf1N1B4_5282 +0.5 1.5 Phage protein compare
Pf1N1B4_1055 +0.5 1.5 Phosphate acetyltransferase (EC 2.3.1.8) compare
Pf1N1B4_5435 +0.5 1.3 hypothetical protein compare
Pf1N1B4_4836 +0.5 1.6 COG2879, Hypothetical small protein yjiX compare
Pf1N1B4_3942 +0.5 1.8 Murein-DD-endopeptidase (EC 3.4.99.-) compare
Pf1N1B4_4812 +0.5 1.5 Site-specific recombinase, phage integrase family compare
Pf1N1B4_1836 +0.5 2.0 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases compare
Pf1N1B4_205 +0.5 1.6 Pyoverdin biosynthesis protein PvdH, L-2,4-diaminobutyrate:2-oxoglutarate aminotransferase (EC 2.6.1.76) compare
Pf1N1B4_1446 +0.5 1.6 Predicted hydroxymethylpyrimidine transporter CytX compare
Pf1N1B4_5779 +0.5 1.1 Nitrous oxide reductase maturation protein NosF (ATPase) compare
Pf1N1B4_4872 +0.5 1.1 Short-chain dehydrogenase/reductase SDR compare
Pf1N1B4_473 +0.5 1.9 DNA internalization-related competence protein ComEC/Rec2 compare
Pf1N1B4_547 +0.5 1.8 3-phosphoglycerate kinase compare
Pf1N1B4_4762 +0.5 1.5 hypothetical protein compare
Pf1N1B4_5187 +0.5 0.8 5S RNA compare
Pf1N1B4_1457 +0.5 3.2 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf1N1B4_1608 +0.5 0.9 FIG00956533: hypothetical protein compare
Pf1N1B4_971 +0.5 4.4 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf1N1B4_5359 +0.5 1.5 hypothetical protein compare
Pf1N1B4_3931 +0.5 2.6 Auxin-binding protein, putative compare
Pf1N1B4_4974 +0.5 1.2 Protease subunit of ATP-dependent Clp proteases compare
Pf1N1B4_138 +0.5 1.0 Putative dipeptidase, pyoverdin biosynthesis PvdM compare
Pf1N1B4_2739 +0.5 0.5 acetyltransferase, GNAT family compare
Pf1N1B4_4648 +0.5 1.0 transcriptional regulator, MerR family compare
Pf1N1B4_1465 +0.5 4.4 Carbamoyltransferase in large core OS assembly cluster compare
Pf1N1B4_4582 +0.5 1.0 hypothetical protein compare
Pf1N1B4_5886 +0.5 1.4 Undecaprenyl-phosphate galactosephosphotransferase (EC 2.7.8.6) compare
Pf1N1B4_5015 +0.5 1.6 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf1N1B4_4873 +0.5 1.7 clavaldehyde dehydrogenase compare
Pf1N1B4_4118 +0.5 1.4 Cyn operon transcriptional activator compare
Pf1N1B4_3787 +0.5 1.4 FIG00960829: hypothetical protein compare
Pf1N1B4_1496 +0.5 2.0 Na(+)/H(+) antiporter compare
Pf1N1B4_3789 +0.5 1.4 Superfamily II DNA/RNA helicases, SNF2 family compare
Pf1N1B4_4835 +0.5 1.1 Carbon starvation protein A compare
Pf1N1B4_291 +0.5 2.9 Major outer membrane lipoprotein I compare
Pf1N1B4_4250 +0.5 1.1 Methyltransferase (EC 2.1.1.-) compare
Pf1N1B4_228 +0.5 1.2 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Pf1N1B4_4551 +0.5 1.1 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179) compare
Pf1N1B4_5032 +0.5 1.4 Hypothetical protein PA2244 (similar to DNA topoisomerase IB, but possibly involved in glycosyl-transfer) compare
Pf1N1B4_5407 +0.5 1.3 hypothetical protein compare
Pf1N1B4_4650 +0.5 1.8 Aspartate racemase (EC 5.1.1.13) compare
Pf1N1B4_2425 +0.5 2.2 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf1N1B4_3458 +0.5 1.2 hypothetical protein compare
Pf1N1B4_2823 +0.5 0.9 COG1496: Uncharacterized conserved protein compare
Pf1N1B4_5327 +0.5 2.3 hypothetical protein compare
Pf1N1B4_4435 +0.5 1.5 Inner membrane protein compare
Pf1N1B4_4402 +0.5 1.1 SoxH protein, homolog compare
Pf1N1B4_2433 +0.5 1.2 FIG00953108: hypothetical protein compare
Pf1N1B4_4111 +0.5 1.4 Panthothenate synthetase compare
Pf1N1B4_4341 +0.5 1.3 hypothetical protein compare
Pf1N1B4_5597 +0.5 2.1 FIG005548: transport protein compare
Pf1N1B4_1155 +0.5 1.5 hypothetical protein compare
Pf1N1B4_4604 +0.5 1.4 FMN reductase, NADPH-dependent compare
Pf1N1B4_4603 +0.5 0.8 hypothetical protein compare
Pf1N1B4_899 +0.5 0.7 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf1N1B4_3841 +0.5 1.8 Nitrate ABC transporter, nitrate-binding protein compare
Pf1N1B4_3540 +0.5 1.7 Metal-dependent phosphohydrolase, HD subdomain compare
Pf1N1B4_1705 +0.5 1.4 SAM-dependent methyltransferases compare
Pf1N1B4_903 +0.5 2.2 Ribosomal RNA large subunit methyltransferase F (EC 2.1.1.51) compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source Tween 20 in Pseudomonas fluorescens FW300-N1B4

For carbon source Tween 20 across organisms