Experiment set4IT064 for Cupriavidus basilensis FW507-4G11

Compare to:

R2A with sodium fluoride 100 mM

200 most important genes:

  gene name fitness t score description  
RR42_RS18305 -4.5 -4.4 anthranilate phosphoribosyltransferase compare
RR42_RS05420 -3.9 -4.4 membrane protein compare
RR42_RS12590 -3.1 -1.8 50S ribosomal protein L9 compare
RR42_RS18840 -3.0 -6.1 2-alkenal reductase compare
RR42_RS05955 -3.0 -1.7 hypothetical protein compare
RR42_RS21220 -2.8 -3.3 iron transporter FeoB compare
RR42_RS12520 -2.5 -2.7 molybdenum cofactor biosynthesis protein MoaE compare
RR42_RS33215 -2.5 -9.1 transferase compare
RR42_RS03095 -2.3 -2.2 succinyl-CoA synthetase subunit beta compare
RR42_RS01920 -2.3 -3.6 protoheme IX farnesyltransferase compare
RR42_RS05860 -2.2 -4.9 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS14080 -2.1 -9.5 RNA polymerase sigma factor RpoE compare
RR42_RS02705 -2.1 -3.0 Holliday junction DNA helicase RuvA compare
RR42_RS06585 -2.1 -13.3 GTP pyrophosphokinase compare
RR42_RS17390 -2.0 -5.9 ATP-dependent DNA helicase RecG compare
RR42_RS12050 -2.0 -6.1 DNA polymerase compare
RR42_RS35875 -2.0 -7.9 UDP-galactose-4-epimerase compare
RR42_RS00830 -2.0 -5.9 cell division protein FtsN compare
RR42_RS33575 -2.0 -2.3 hypothetical protein compare
RR42_RS33235 -2.0 -6.0 GDP-mannose 4,6-dehydratase compare
RR42_RS19005 -2.0 -5.9 3-dehydroquinate synthase compare
RR42_RS33250 -2.0 -5.7 tyrosine protein kinase compare
RR42_RS07115 -2.0 -1.6 hypothetical protein compare
RR42_RS12515 -2.0 -2.1 camphor resistance protein CrcB compare
RR42_RS15015 -1.9 -1.3 exodeoxyribonuclease VII small subunit compare
RR42_RS15410 -1.9 -4.5 membrane protein compare
RR42_RS03080 -1.9 -4.2 recombinase RecA compare
RR42_RS06095 -1.9 -5.0 hypothetical protein compare
RR42_RS33195 -1.9 -8.4 UDP-sugar lipid carrier transferase compare
RR42_RS25785 -1.9 -3.4 TetR family transcriptional regulator compare
RR42_RS33260 -1.9 -5.2 multidrug MFS transporter compare
RR42_RS15090 -1.8 -5.6 DNA helicase compare
RR42_RS04475 -1.8 -10.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS33210 -1.8 -6.0 teichoic acid biosynthesis protein compare
RR42_RS14365 -1.8 -2.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS17055 -1.8 -5.9 LuxR family transcriptional regulator compare
RR42_RS32600 -1.8 -4.7 cytochrome O ubiquinol oxidase subunit II compare
RR42_RS23140 -1.8 -1.5 peptidylprolyl isomerase compare
RR42_RS14790 -1.7 -8.0 cobalamin biosynthesis protein CobD compare
RR42_RS12550 -1.7 -2.7 hypothetical protein compare
RR42_RS15770 -1.7 -3.7 hypothetical protein compare
RR42_RS17565 -1.7 -11.3 LysR family transcriptional regulator compare
RR42_RS32590 -1.7 -2.0 cytochrome o ubiquinol oxidase subunit III compare
RR42_RS15810 -1.7 -3.4 UDP-N-acetylglucosamine 4,6-dehydratase compare
RR42_RS21000 -1.7 -3.1 glycosyl transferase compare
RR42_RS06580 -1.7 -4.1 aminoacrylate peracid reductase compare
RR42_RS18295 -1.6 -8.5 anthranilate synthase component I compare
RR42_RS14360 -1.6 -1.5 tryptophan synthase subunit alpha compare
RR42_RS07125 -1.6 -2.3 hypothetical protein compare
RR42_RS00715 -1.6 -1.9 ferritin compare
RR42_RS31530 -1.6 -1.7 histidine kinase compare
RR42_RS11770 -1.6 -2.1 cyclase compare
RR42_RS15895 -1.6 -5.7 uroporphyrinogen III methyltransferase compare
RR42_RS33240 -1.6 -9.7 GDP-L-fucose synthase compare
RR42_RS02440 -1.6 -2.2 membrane protein compare
RR42_RS18855 -1.5 -2.3 preprotein translocase compare
RR42_RS17685 -1.5 -4.7 alkyl hydroperoxide reductase compare
RR42_RS32595 -1.5 -4.5 cytochrome o ubiquinol oxidase subunit I compare
RR42_RS20570 -1.5 -1.2 biopolymer transporter ExbD compare
RR42_RS04460 -1.4 -6.7 chorismate mutase compare
RR42_RS02205 -1.4 -2.0 succinate dehydrogenase compare
RR42_RS15470 -1.4 -1.6 biopolymer transporter ExbD compare
RR42_RS33245 -1.4 -4.8 mannose-1-phosphate guanyltransferase compare
RR42_RS01925 -1.4 -5.2 photosynthetic protein synthase I compare
RR42_RS18850 -1.3 -2.2 preprotein translocase subunit TatC compare
RR42_RS18425 -1.3 -1.0 hypothetical protein compare
RR42_RS15890 -1.3 -6.0 heme biosynthesis protein HemY compare
RR42_RS18300 -1.3 -2.2 anthranilate synthase subunit II compare
RR42_RS22165 -1.3 -1.1 hypothetical protein compare
RR42_RS33255 -1.3 -1.5 protein-tyrosine phosphatase compare
RR42_RS24760 -1.3 -1.3 hypothetical protein compare
RR42_RS15380 -1.3 -3.4 kynurenine formamidase compare
RR42_RS06575 -1.3 -3.9 alpha/beta hydrolase compare
RR42_RS06565 -1.3 -1.7 metal-binding protein compare
RR42_RS24535 -1.2 -1.8 tRNA-Asn compare
RR42_RS03370 -1.2 -1.6 fructose ABC transporter, substrate-binding component (FrcB) (from data) compare
RR42_RS13465 -1.2 -3.7 phosphate transporter permease subunit PstC compare
RR42_RS01630 -1.2 -1.1 branched-chain amino acid ABC transporter ATP-binding protein compare
RR42_RS24605 -1.2 -5.7 TetR family transcriptional regulator compare
RR42_RS00615 -1.2 -4.3 recombinase XerC compare
RR42_RS09375 -1.2 -1.3 taurine dioxygenase compare
RR42_RS32585 -1.2 -1.5 cytochrome C oxidase compare
RR42_RS33350 -1.2 -2.0 hypothetical protein compare
RR42_RS26900 -1.2 -1.4 enoyl-CoA hydratase compare
RR42_RS11225 -1.1 -1.9 peptide ABC transporter permease compare
RR42_RS17060 -1.1 -7.0 histidine kinase compare
RR42_RS04135 -1.1 -1.2 pilus assembly protein CpaB compare
RR42_RS08945 -1.1 -1.1 hypothetical protein compare
RR42_RS35295 -1.1 -2.2 diguanylate cyclase compare
RR42_RS15775 -1.1 -3.4 N-acetylneuraminate synthase compare
RR42_RS03630 -1.1 -0.9 cold-shock protein compare
RR42_RS01795 -1.1 -6.6 phosphoenolpyruvate-protein phosphotransferase compare
RR42_RS09630 -1.0 -2.5 hypothetical protein compare
RR42_RS22585 -1.0 -1.5 MarR family transcriptional regulator compare
RR42_RS16680 -1.0 -3.0 hypothetical protein compare
RR42_RS17740 -1.0 -3.2 hypothetical protein compare
RR42_RS00345 -1.0 -1.3 LysR family transcriptional regulator compare
RR42_RS18475 -1.0 -3.5 membrane protein compare
RR42_RS20205 -1.0 -1.7 chromosome partitioning protein compare
RR42_RS19860 -1.0 -0.9 tartronate semialdehyde reductase compare
RR42_RS06020 -1.0 -1.0 Fe-S cluster assembly transcriptional regulator IscR compare
RR42_RS11230 -1.0 -2.3 peptide ABC transporter ATP-binding protein compare
RR42_RS26935 -1.0 -2.3 farnesyl-diphosphate farnesyltransferase compare
RR42_RS04700 -1.0 -0.8 ribonuclease G compare
RR42_RS01880 -1.0 -3.6 cytochrome oxidase subunit I compare
RR42_RS13830 -1.0 -1.3 hypothetical protein compare
RR42_RS24040 -0.9 -2.9 hypothetical protein compare
RR42_RS04880 -0.9 -5.1 coproporphyrinogen III oxidase compare
RR42_RS21435 -0.9 -2.0 hypothetical protein compare
RR42_RS02310 -0.9 -2.1 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
RR42_RS00790 -0.9 -3.6 chemotaxis protein CheY compare
RR42_RS06255 -0.9 -1.2 lipoprotein compare
RR42_RS06485 -0.9 -4.2 chorismate synthase compare
RR42_RS27280 -0.9 -3.1 hypothetical protein compare
RR42_RS11180 -0.9 -2.1 peptidylprolyl isomerase compare
RR42_RS04320 -0.9 -3.0 cell division protein FtsK compare
RR42_RS17375 -0.9 -1.2 hypothetical protein compare
RR42_RS14965 -0.9 -1.8 hypothetical protein compare
RR42_RS00610 -0.9 -3.8 hypothetical protein compare
RR42_RS19940 -0.9 -2.2 heat-shock protein HtpX compare
RR42_RS19010 -0.9 -3.5 shikimate kinase compare
RR42_RS01090 -0.9 -5.0 histidine kinase compare
RR42_RS20775 -0.9 -0.8 hypothetical protein compare
RR42_RS08245 -0.9 -1.4 hypothetical protein compare
RR42_RS10105 -0.8 -2.5 phosphonate ABC transporter compare
RR42_RS29610 -0.8 -1.5 cytochrome C2 compare
RR42_RS13040 -0.8 -1.7 iron transporter compare
RR42_RS12015 -0.8 -1.7 dihydrolipoamide acyltransferase compare
RR42_RS17720 -0.8 -1.5 sugar kinase compare
RR42_RS07360 -0.8 -1.5 ATPase compare
RR42_RS24510 -0.8 -1.2 hypothetical protein compare
RR42_RS18605 -0.8 -2.3 sugar ABC transporter permease compare
RR42_RS26905 -0.8 -2.7 methylcrotonoyl-CoA carboxylase compare
RR42_RS23110 -0.8 -1.0 isochorismatase compare
RR42_RS25510 -0.8 -1.3 short-chain dehydrogenase compare
RR42_RS16360 -0.8 -1.6 transposase compare
RR42_RS09085 -0.8 -1.0 C4-dicarboxylate ABC transporter permease compare
RR42_RS17690 -0.8 -3.7 3-dehydroquinate dehydratase compare
RR42_RS02210 -0.8 -1.1 succinate dehydrogenase compare
RR42_RS16675 -0.8 -1.1 hypothetical protein compare
RR42_RS19085 -0.8 -1.0 cytochrome C biogenesis protein ResB compare
RR42_RS15795 -0.8 -1.8 spore coat protein compare
RR42_RS32090 -0.8 -1.7 hypothetical protein compare
RR42_RS07200 -0.8 -2.7 hypothetical protein compare
RR42_RS34185 -0.8 -2.8 hypothetical protein compare
RR42_RS21020 -0.8 -3.2 hypothetical protein compare
RR42_RS00600 -0.8 -0.5 DeoR family transcriptional regulator compare
RR42_RS12530 -0.7 -1.5 molybdenum cofactor biosynthesis protein MoaA compare
RR42_RS04850 -0.7 -1.1 hypothetical protein compare
RR42_RS30410 -0.7 -1.5 hypothetical protein compare
RR42_RS24985 -0.7 -1.5 hypothetical protein compare
RR42_RS02430 -0.7 -4.2 sodium:solute symporter compare
RR42_RS32645 -0.7 -0.9 2-keto-4-pentenoate hydratase compare
RR42_RS28885 -0.7 -2.1 membrane protein compare
RR42_RS08025 -0.7 -1.5 phage Gp37Gp68 compare
RR42_RS08770 -0.7 -0.9 2-nitropropane dioxygenase compare
RR42_RS25470 -0.7 -0.9 alpha/beta hydrolase compare
RR42_RS29725 -0.7 -2.5 hypothetical protein compare
RR42_RS16525 -0.7 -1.7 anti-sigma factor compare
RR42_RS15710 -0.7 -3.0 LPS biosynthesis protein compare
RR42_RS01915 -0.7 -2.7 cytochrome C oxidase subunit I compare
RR42_RS17970 -0.7 -1.2 hypothetical protein compare
RR42_RS26580 -0.7 -1.1 hypothetical protein compare
RR42_RS13835 -0.7 -2.2 hypothetical protein compare
RR42_RS23270 -0.7 -2.1 pyridoxamine 5'-phosphate oxidase compare
RR42_RS15750 -0.7 -3.0 hypothetical protein compare
RR42_RS01400 -0.7 -3.4 5-formyltetrahydrofolate cyclo-ligase compare
RR42_RS17395 -0.7 -3.1 S-adenosylmethionine tRNA ribosyltransferase compare
RR42_RS03050 -0.7 -1.8 energy transducer TonB compare
RR42_RS06860 -0.7 -1.2 hypothetical protein compare
RR42_RS01875 -0.7 -2.9 cytochrome C oxidase subunit II compare
RR42_RS13530 -0.7 -1.4 4-hydroxybenzoyl-CoA thioesterase compare
RR42_RS02545 -0.7 -1.1 nitrate ABC transporter ATP-binding protein compare
RR42_RS36120 -0.7 -3.1 LysR family transcriptional regulator compare
RR42_RS33070 -0.7 -2.2 oxidoreductase compare
RR42_RS09945 -0.7 -2.0 hypothetical protein compare
RR42_RS01260 -0.7 -3.1 lauroyl acyltransferase compare
RR42_RS23460 -0.7 -1.1 alpha/beta hydrolase compare
RR42_RS04895 -0.7 -4.7 serine/threonine protein phosphatase compare
RR42_RS01870 -0.7 -1.9 membrane protein compare
RR42_RS23305 -0.7 -0.8 hypothetical protein compare
RR42_RS08410 -0.7 -2.5 hypothetical protein compare
RR42_RS08490 -0.7 -2.5 phage Rha protein compare
RR42_RS08865 -0.7 -2.0 hydroxylase compare
RR42_RS10685 -0.7 -2.6 3-oxoacyl-ACP reductase compare
RR42_RS06880 -0.7 -1.1 hypothetical protein compare
RR42_RS15460 -0.7 -2.5 translocation protein TolB compare
RR42_RS06635 -0.7 -3.3 MerR family transcriptional regulator compare
RR42_RS17885 -0.7 -2.7 ABC transporter permease compare
RR42_RS32235 -0.7 -2.8 hopanoid biosynthesis associated radical SAM protein HpnH compare
RR42_RS00145 -0.7 -3.5 hypothetical protein compare
RR42_RS03560 -0.7 -1.5 hypothetical protein compare
RR42_RS25100 -0.7 -2.3 dehydratase compare
RR42_RS17730 -0.7 -1.6 hypothetical protein compare
RR42_RS11530 -0.7 -2.3 LuxR family transcriptional regulator compare
RR42_RS06875 -0.7 -1.0 hypothetical protein compare
RR42_RS19695 -0.7 -1.2 cytochrome C protein compare
RR42_RS28955 -0.7 -2.2 transcriptional regulator compare
RR42_RS07170 -0.7 -2.2 hypothetical protein compare
RR42_RS17930 -0.7 -1.9 RNA pyrophosphohydrolase compare


Specific Phenotypes

None in this experiment

For Cupriavidus basilensis FW507-4G11 in stress experiments

For stress sodium fluoride across organisms