Experiment set4IT063 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

PBS control - replicate 2

200 most important genes:

  gene name fitness t score description  
Xcc-8004.3054.1 -3.6 -2.5 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.1336.1 -3.3 -7.9 two-component system sensor protein compare
Xcc-8004.623.1 -2.8 -3.3 Phosphoserine phosphatase compare
Xcc-8004.5192.1 -2.7 -11.2 hypothetical protein compare
Xcc-8004.1727.1 -2.6 -2.9 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.4510.1 -2.5 -2.3 ATP binding component of ABC-transporter compare
Xcc-8004.5193.1 -2.4 -14.7 Outer membrane protein assembly factor YaeT precursor compare
Xcc-8004.127.1 -2.4 -2.2 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.3395.1 -2.4 -3.8 Transcriptional regulator, GntR family compare
Xcc-8004.2217.1 -2.3 -3.5 FIG01209779: hypothetical protein compare
Xcc-8004.271.1 -2.3 -3.8 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.4620.1 -2.3 -8.7 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.1763.1 -2.1 -3.8 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.589.1 -1.9 -2.9 hypothetical protein compare
Xcc-8004.1660.1 -1.8 -1.5 PTS system nitrogen-specific IIA component, PtsN compare
Xcc-8004.4947.1 -1.8 -2.6 Histone H1 compare
Xcc-8004.950.1 -1.8 -1.2 General secretion pathway protein L compare
Xcc-8004.2086.1 -1.7 -2.3 Xanthan biosynthesis glycosyltransferase GumH compare
Xcc-8004.1200.1 -1.7 -2.0 hypothetical protein compare
Xcc-8004.4292.1 -1.7 -3.0 Taurine transport ATP-binding protein TauB compare
Xcc-8004.3346.1 -1.7 -2.8 hypothetical protein compare
Xcc-8004.2346.1 -1.6 -2.0 ABC transporter involved in cytochrome c biogenesis, CcmB subunit compare
Xcc-8004.3208.1 -1.6 -1.8 Methyltransferase type 12 compare
Xcc-8004.1871.1 -1.5 -3.1 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) compare
Xcc-8004.1372.1 -1.5 -2.8 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.4752.1 -1.5 -1.9 DNA topoisomerase I (EC 5.99.1.2) compare
Xcc-8004.3304.1 -1.4 -1.8 FIG01211108: hypothetical protein compare
Xcc-8004.2011.1 -1.4 -1.9 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.2922.1 -1.3 -2.2 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.234.1 -1.3 -7.3 cardiolipin synthase compare
Xcc-8004.4112.1 -1.3 -2.9 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.4457.1 -1.3 -4.0 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Xcc-8004.1027.1 -1.2 -1.3 Two-component system sensor protein compare
Xcc-8004.5189.1 -1.2 -2.3 FIG01212821: hypothetical protein compare
Xcc-8004.1282.1 -1.2 -4.4 sulfur deprivation response regulator compare
Xcc-8004.4732.1 -1.2 -1.5 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Xcc-8004.5326.1 -1.2 -1.7 Mobile element protein compare
Xcc-8004.2372.1 -1.2 -4.2 Pheromone shutdown protein compare
Xcc-8004.4368.1 -1.2 -1.8 FIG01209977: hypothetical protein compare
Xcc-8004.2921.1 -1.2 -2.3 ferrous iron transport protein compare
Xcc-8004.884.1 -1.1 -4.0 Rod shape-determining protein MreD compare
Xcc-8004.1241.1 -1.1 -3.6 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.4286.1 -1.1 -5.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Xcc-8004.3788.1 -1.1 -3.0 Protein of unknown function DUF1428 compare
Xcc-8004.914.1 -1.1 -5.4 tail-specific protease compare
Xcc-8004.574.1 -1.1 -4.7 Di-/tripeptide transporter compare
Xcc-8004.4000.1 -1.1 -2.2 COG1399 protein, clustered with ribosomal protein L32p compare
Xcc-8004.4039.1 -1.1 -2.1 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.1118.1 -1.1 -1.6 hypothetical protein compare
Xcc-8004.4481.1 -1.1 -4.4 hypothetical protein compare
Xcc-8004.4616.1 -1.0 -5.6 Sensor histidine kinase compare
Xcc-8004.791.1 -1.0 -2.6 FIG01211375: hypothetical protein compare
Xcc-8004.5185.1 -1.0 -2.2 Gluconokinase (EC 2.7.1.12) compare
Xcc-8004.3853.1 -1.0 -0.9 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) compare
Xcc-8004.1511.1 -1.0 -2.3 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.907.1 -1.0 -7.4 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Xcc-8004.1858.1 -1.0 -0.9 FIG01211170: hypothetical protein compare
Xcc-8004.3498.1 -1.0 -1.1 hypothetical protein compare
Xcc-8004.270.1 -1.0 -3.6 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Xcc-8004.1943.1 -1.0 -2.7 FIG01211831: hypothetical protein compare
Xcc-8004.4441.1 -1.0 -2.5 Tyrosine recombinase XerD compare
Xcc-8004.1164.1 -1.0 -2.7 Transcriptional repressor, BlaI/MecI family compare
Xcc-8004.3653.1 -1.0 -1.5 FIG01212122: hypothetical protein compare
Xcc-8004.1959.1 -0.9 -1.6 hypothetical protein compare
Xcc-8004.3431.1 -0.9 -1.6 DNA repair protein RecN compare
Xcc-8004.4833.1 -0.9 -2.1 FIG01111678: hypothetical protein compare
Xcc-8004.236.1 -0.9 -1.5 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) compare
Xcc-8004.3049.1 -0.9 -5.3 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.4529.1 -0.9 -1.3 FIG01210979: hypothetical protein compare
Xcc-8004.4210.1 -0.9 -3.1 Thymidine phosphorylase (EC 2.4.2.4) compare
Xcc-8004.4530.1 -0.9 -2.8 Dethiobiotin synthetase (EC 6.3.3.3) compare
Xcc-8004.932.1 -0.9 -3.3 histidine kinase/response regulator hybrid protein compare
Xcc-8004.2839.1 -0.9 -1.6 Signal transduction histidine kinase CheA (EC 2.7.3.-) compare
Xcc-8004.4844.1 -0.9 -0.9 FIG01210764: hypothetical protein compare
Xcc-8004.4561.1 -0.9 -2.9 Sensor histidine kinase compare
Xcc-8004.898.1 -0.9 -1.8 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.2169.1 -0.8 -1.3 Preprotein translocase subunit YajC (TC 3.A.5.1.1) compare
Xcc-8004.3861.1 -0.8 -3.7 FIG01210504: hypothetical protein compare
Xcc-8004.4102.1 -0.8 -1.5 FIG01211949: hypothetical protein compare
Xcc-8004.2559.1 -0.8 -1.8 hypothetical protein compare
Xcc-8004.1691.1 -0.8 -2.1 FIG019175: putative membrane protein compare
Xcc-8004.305.1 -0.8 -2.6 hypothetical protein compare
Xcc-8004.495.1 -0.8 -3.4 EpiH/GdmH-related protein compare
Xcc-8004.2383.1 -0.8 -1.9 FIG01211288: hypothetical protein compare
Xcc-8004.4503.1 -0.8 -3.0 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) compare
Xcc-8004.1236.1 -0.8 -3.0 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.4948.1 -0.8 -1.2 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Xcc-8004.3863.1 -0.8 -2.2 Septum site-determining protein MinD compare
Xcc-8004.1919.1 -0.8 -3.5 FIG056164: rhomboid family serine protease compare
Xcc-8004.3244.1 -0.8 -1.7 DNA repair protein RadC compare
Xcc-8004.4912.1 -0.8 -1.7 FIG01210621: hypothetical protein compare
Xcc-8004.5133.1 -0.8 -1.0 FIG01212313: hypothetical protein compare
Xcc-8004.4596.1 -0.8 -4.2 hypothetical protein compare
Xcc-8004.2079.1 -0.8 -2.1 Outer membrane protein GumB, involved in the export of xanthan compare
Xcc-8004.2385.1 -0.8 -4.6 lipopolysaccharide core biosynthesis protein compare
Xcc-8004.2059.1 -0.8 -1.3 hypothetical protein compare
Xcc-8004.4306.1 -0.8 -1.5 hypothetical protein compare
Xcc-8004.5231.1 -0.8 -2.2 hypothetical protein compare
Xcc-8004.4318.1 -0.8 -2.2 hypothetical protein compare
Xcc-8004.3957.1 -0.7 -2.7 DnaJ-class molecular chaperone CbpA compare
Xcc-8004.2614.1 -0.7 -1.8 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.3852.1 -0.7 -3.0 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Xcc-8004.1303.1 -0.7 -2.4 Inner membrane protein of type IV secretion of T-DNA complex, VirB6 compare
Xcc-8004.585.1 -0.7 -0.9 Na(+) H(+) antiporter subunit F compare
Xcc-8004.3703.1 -0.7 -1.2 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.5352.1 -0.7 -1.2 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Xcc-8004.3923.1 -0.7 -1.6 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.2139.1 -0.7 -2.9 FIG01213750: hypothetical protein compare
Xcc-8004.2095.1 -0.7 -2.7 3-oxoacyl-(acyl carrier protein) synthase (EC 2.3.1.41) compare
Xcc-8004.1117.1 -0.7 -1.8 hypothetical protein compare
Xcc-8004.2449.1 -0.7 -2.6 Glucokinase (EC 2.7.1.2) compare
Xcc-8004.731.1 -0.7 -2.2 hypothetical protein compare
Xcc-8004.3848.1 -0.7 -1.5 FIG01212003: hypothetical protein compare
Xcc-8004.3582.1 -0.7 -0.9 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.5302.1 -0.7 -2.2 FIG039767: hypothetical protein compare
Xcc-8004.1654.1 -0.7 -1.3 Mg/Co/Ni transporter MgtE / CBS domain compare
Xcc-8004.4071.1 -0.7 -2.2 hypothetical protein compare
Xcc-8004.4891.1 -0.7 -3.6 Dolichol-phosphate mannosyltransferase compare
Xcc-8004.488.1 -0.7 -3.7 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA compare
Xcc-8004.1488.1 -0.7 -2.0 Coenzyme PQQ synthesis protein B compare
Xcc-8004.3426.1 -0.7 -3.0 Chaperone protein DnaJ compare
Xcc-8004.2333.1 -0.7 -3.9 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Xcc-8004.738.1 -0.7 -1.2 Malonate decarboxylase gamma subunit compare
Xcc-8004.2434.1 -0.7 -2.4 hypothetical protein compare
Xcc-8004.4957.1 -0.7 -1.8 hypothetical protein compare
Xcc-8004.2879.1 -0.7 -0.7 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.850.1 -0.7 -2.6 ATP-dependent protease HslV (EC 3.4.25.-) compare
Xcc-8004.3402.1 -0.7 -1.3 FIG01210246: hypothetical protein compare
Xcc-8004.3310.1 -0.7 -2.2 Chromosome partition protein smc compare
Xcc-8004.2212.1 -0.7 -1.9 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) compare
Xcc-8004.1797.1 -0.7 -2.0 Aldo-keto reductase compare
Xcc-8004.4100.1 -0.7 -1.6 hypothetical protein compare
Xcc-8004.2012.1 -0.7 -3.0 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) compare
Xcc-8004.2867.1 -0.7 -1.1 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.4699.1 -0.7 -0.9 Flagellar motor protein compare
Xcc-8004.2563.1 -0.7 -1.4 FIG01210540: hypothetical protein compare
Xcc-8004.93.1 -0.7 -1.7 FIG01211857: hypothetical protein compare
Xcc-8004.2131.1 -0.7 -1.7 Predicted 4-hydroxyproline dipeptidase compare
Xcc-8004.391.1 -0.7 -2.8 NAD-dependent protein deacetylase of SIR2 family compare
Xcc-8004.1454.1 -0.6 -1.9 hypothetical protein compare
Xcc-8004.2358.1 -0.6 -3.3 Segregation and condensation protein A compare
Xcc-8004.3072.1 -0.6 -1.6 hypothetical protein compare
Xcc-8004.659.1 -0.6 -1.5 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.1322.1 -0.6 -2.5 hypothetical protein compare
Xcc-8004.715.1 -0.6 -1.9 RNA polymerase sigma factor compare
Xcc-8004.1615.1 -0.6 -1.1 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.328.1 -0.6 -1.7 FIG024006: iron uptake protein compare
Xcc-8004.930.1 -0.6 -3.7 Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) compare
Xcc-8004.1764.1 -0.6 -2.4 FIG01209971: hypothetical protein compare
Xcc-8004.721.1 -0.6 -1.6 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3201.1 -0.6 -1.4 hypothetical protein compare
Xcc-8004.1619.1 -0.6 -1.5 PspA/IM30 family protein compare
Xcc-8004.543.1 -0.6 -2.0 FIG01210004: hypothetical protein compare
Xcc-8004.3366.1 -0.6 -2.3 Ribonuclease T (EC 3.1.13.-) compare
Xcc-8004.1328.1 -0.6 -0.7 FIG01210090: hypothetical protein compare
Xcc-8004.1394.1 -0.6 -1.7 Cobyrinic acid A,C-diamide synthase compare
Xcc-8004.1790.1 -0.6 -1.7 Zinc uptake regulation protein ZUR compare
Xcc-8004.713.1 -0.6 -0.7 FIG01210186: hypothetical protein compare
Xcc-8004.1205.1 -0.6 -1.2 hypothetical protein compare
Xcc-8004.456.1 -0.6 -1.1 carbonic anhydrase, family 3 compare
Xcc-8004.1204.1 -0.6 -1.4 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Xcc-8004.3394.1 -0.6 -1.7 hypothetical protein compare
Xcc-8004.1019.1 -0.6 -2.1 hypothetical protein compare
Xcc-8004.773.1 -0.6 -2.0 Transcriptional regulator marR family compare
Xcc-8004.649.1 -0.6 -0.7 hypothetical protein compare
Xcc-8004.3752.1 -0.6 -1.0 Isopenicillin N epimerase (EC 5.1.1.17) compare
Xcc-8004.2561.1 -0.6 -3.2 FIG01213638: hypothetical protein compare
Xcc-8004.730.1 -0.6 -2.4 Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-) compare
Xcc-8004.401.1 -0.6 -1.0 FMN reductase (EC 1.5.1.29) compare
Xcc-8004.4761.1 -0.6 -2.2 FIG01211042: hypothetical protein compare
Xcc-8004.3442.1 -0.6 -1.0 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.2326.1 -0.6 -2.0 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Xcc-8004.5365.1 -0.6 -2.7 Uncharacterized ABC transporter, permease component YrbE compare
Xcc-8004.5190.1 -0.6 -1.9 3-dehydroquinate dehydratase compare
Xcc-8004.3108.1 -0.6 -1.3 Regulatory protein RecX compare
Xcc-8004.1950.1 -0.6 -1.8 FIG01210891: hypothetical protein compare
Xcc-8004.3580.1 -0.6 -1.5 Transcriptional regulator, PadR family compare
Xcc-8004.1001.1 -0.6 -1.3 FIG01213217: hypothetical protein compare
Xcc-8004.3178.1 -0.5 -2.5 cytochrome like B561 compare
Xcc-8004.1702.1 -0.5 -2.7 Proteins containing SET domain compare
Xcc-8004.5280.1 -0.5 -1.1 hypothetical protein compare
Xcc-8004.4956.1 -0.5 -1.9 Cytochrome B561 compare
Xcc-8004.4231.1 -0.5 -0.6 two-component system regulatory protein compare
Xcc-8004.4373.1 -0.5 -1.5 LppC putative lipoprotein compare
Xcc-8004.5205.1 -0.5 -1.7 FIG01210461: hypothetical protein compare
Xcc-8004.764.1 -0.5 -1.0 FIG01213873: hypothetical protein compare
Xcc-8004.3684.1 -0.5 -3.5 Cobalt-zinc-cadmium resistance protein CzcD compare
Xcc-8004.4294.1 -0.5 -1.2 membrane protein, putative compare
Xcc-8004.4374.1 -0.5 -1.1 Predicted endonuclease distantly related to archaeal Holliday junction resolvase compare
Xcc-8004.2292.1 -0.5 -3.0 Polygalacturonase (EC 3.2.1.15) compare
Xcc-8004.665.1 -0.5 -2.1 FIG01211711: hypothetical protein compare
Xcc-8004.4836.1 -0.5 -1.9 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
Xcc-8004.4877.1 -0.5 -4.8 Membrane proteins related to metalloendopeptidases compare
Xcc-8004.2294.1 -0.5 -1.6 Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) compare
Xcc-8004.4429.1 -0.5 -1.1 General secretion pathway protein H compare
Xcc-8004.3374.1 -0.5 -1.3 hypothetical protein compare
Xcc-8004.4824.1 -0.5 -3.2 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.3869.1 -0.5 -1.6 FIG01211837: hypothetical protein compare
Xcc-8004.3710.1 -0.5 -0.8 hypothetical protein compare
Xcc-8004.740.1 -0.5 -1.6 Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25) compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in control experiments