Experiment set4IT062 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

PBS control - replicate 1

200 most important genes:

  gene name fitness t score description  
Xcc-8004.623.1 -3.7 -3.6 Phosphoserine phosphatase compare
Xcc-8004.1336.1 -3.1 -8.8 two-component system sensor protein compare
Xcc-8004.3395.1 -2.9 -4.2 Transcriptional regulator, GntR family compare
Xcc-8004.5192.1 -2.8 -11.6 hypothetical protein compare
Xcc-8004.271.1 -2.7 -4.3 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.5193.1 -2.7 -16.4 Outer membrane protein assembly factor YaeT precursor compare
Xcc-8004.884.1 -2.2 -6.2 Rod shape-determining protein MreD compare
Xcc-8004.2086.1 -2.1 -3.0 Xanthan biosynthesis glycosyltransferase GumH compare
Xcc-8004.4620.1 -2.0 -8.4 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.4481.1 -2.0 -6.4 hypothetical protein compare
Xcc-8004.1763.1 -2.0 -4.1 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.1236.1 -1.9 -5.5 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.2217.1 -1.9 -4.2 FIG01209779: hypothetical protein compare
Xcc-8004.4640.1 -1.8 -2.6 FIG01210726: hypothetical protein compare
Xcc-8004.4286.1 -1.7 -7.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Xcc-8004.1118.1 -1.7 -1.9 hypothetical protein compare
Xcc-8004.1871.1 -1.7 -3.4 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) compare
Xcc-8004.1727.1 -1.7 -2.7 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.2930.1 -1.6 -2.0 hypothetical protein compare
Xcc-8004.876.1 -1.6 -2.5 Mobile element protein compare
Xcc-8004.1511.1 -1.5 -2.8 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.127.1 -1.5 -2.4 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.4039.1 -1.5 -2.9 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.5253.1 -1.5 -1.5 hypothetical protein compare
Xcc-8004.2372.1 -1.4 -5.4 Pheromone shutdown protein compare
Xcc-8004.2011.1 -1.4 -2.4 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.589.1 -1.4 -2.1 hypothetical protein compare
Xcc-8004.907.1 -1.2 -8.8 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Xcc-8004.1241.1 -1.2 -4.0 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.3120.1 -1.2 -2.5 RNA-binding protein Hfq compare
Xcc-8004.5168.1 -1.1 -1.1 hypothetical protein compare
Xcc-8004.4503.1 -1.1 -4.1 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) compare
Xcc-8004.1657.1 -1.1 -1.7 PTS system, mannose-specific IIA component compare
Xcc-8004.2343.1 -1.1 -1.6 Cytochrome c-type biogenesis protein CcmE, heme chaperone compare
Xcc-8004.3862.1 -1.1 -4.3 Septum site-determining protein MinC compare
Xcc-8004.4732.1 -1.1 -1.5 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Xcc-8004.585.1 -1.1 -1.2 Na(+) H(+) antiporter subunit F compare
Xcc-8004.288.1 -1.1 -1.4 Ferredoxin compare
Xcc-8004.1282.1 -1.0 -4.2 sulfur deprivation response regulator compare
Xcc-8004.1003.1 -1.0 -2.0 FIG027190: Putative transmembrane protein compare
Xcc-8004.2579.1 -1.0 -2.4 Transcriptional regulator in PFGI-1-like cluster compare
Xcc-8004.5326.1 -1.0 -1.6 Mobile element protein compare
Xcc-8004.574.1 -1.0 -4.7 Di-/tripeptide transporter compare
Xcc-8004.3752.1 -1.0 -1.7 Isopenicillin N epimerase (EC 5.1.1.17) compare
Xcc-8004.1841.1 -1.0 -2.5 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) compare
Xcc-8004.3296.1 -1.0 -3.7 Histidine ammonia-lyase (EC 4.3.1.3) compare
Xcc-8004.3652.1 -1.0 -2.8 FIG01211136: hypothetical protein compare
Xcc-8004.914.1 -1.0 -5.0 tail-specific protease compare
Xcc-8004.3346.1 -1.0 -2.1 hypothetical protein compare
Xcc-8004.234.1 -1.0 -5.9 cardiolipin synthase compare
Xcc-8004.3882.1 -1.0 -2.4 hypothetical protein compare
Xcc-8004.4948.1 -0.9 -1.4 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Xcc-8004.27.1 -0.9 -1.8 hypothetical protein compare
Xcc-8004.2055.1 -0.9 -1.6 Mobile element protein compare
Xcc-8004.4457.1 -0.9 -3.4 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Xcc-8004.3881.1 -0.9 -2.4 hypothetical protein compare
Xcc-8004.3103.1 -0.9 -2.1 hypothetical protein compare
Xcc-8004.2385.1 -0.9 -5.2 lipopolysaccharide core biosynthesis protein compare
Xcc-8004.5087.1 -0.9 -1.6 FIG027190: Putative transmembrane protein compare
Xcc-8004.4210.1 -0.9 -3.4 Thymidine phosphorylase (EC 2.4.2.4) compare
Xcc-8004.2497.1 -0.9 -1.1 Mobile element protein compare
Xcc-8004.495.1 -0.9 -3.9 EpiH/GdmH-related protein compare
Xcc-8004.270.1 -0.9 -3.6 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Xcc-8004.3049.1 -0.9 -5.1 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.4241.1 -0.9 -1.3 cytidine and deoxycytidylate deaminase family protein compare
Xcc-8004.3310.1 -0.9 -2.9 Chromosome partition protein smc compare
Xcc-8004.1654.1 -0.9 -1.6 Mg/Co/Ni transporter MgtE / CBS domain compare
Xcc-8004.1919.1 -0.9 -4.0 FIG056164: rhomboid family serine protease compare
Xcc-8004.4428.1 -0.9 -1.8 General secretion pathway protein I compare
Xcc-8004.4112.1 -0.9 -2.4 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.4596.1 -0.9 -5.0 hypothetical protein compare
Xcc-8004.3676.1 -0.9 -1.8 Translation elongation factor LepA compare
Xcc-8004.2168.1 -0.9 -2.8 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Xcc-8004.2081.1 -0.9 -2.4 Xanthan biosynthesis chain length determinant protein GumC compare
Xcc-8004.1108.1 -0.9 -1.4 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Xcc-8004.3230.1 -0.9 -1.7 Phage DNA invertase compare
Xcc-8004.1950.1 -0.8 -2.0 FIG01210891: hypothetical protein compare
Xcc-8004.2561.1 -0.8 -4.7 FIG01213638: hypothetical protein compare
Xcc-8004.93.1 -0.8 -2.1 FIG01211857: hypothetical protein compare
Xcc-8004.3442.1 -0.8 -1.5 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.2335.1 -0.8 -3.5 Transport ATP-binding protein CydC compare
Xcc-8004.5324.1 -0.8 -1.9 Mobile element protein compare
Xcc-8004.4616.1 -0.8 -5.0 Sensor histidine kinase compare
Xcc-8004.3253.1 -0.8 -2.3 IncQ plasmid conjugative transfer protein TraG compare
Xcc-8004.3595.1 -0.8 -1.2 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Xcc-8004.4441.1 -0.8 -2.1 Tyrosine recombinase XerD compare
Xcc-8004.2890.1 -0.8 -3.3 Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24) compare
Xcc-8004.2361.1 -0.8 -2.1 Cell division protein BolA compare
Xcc-8004.5086.1 -0.8 -1.6 membrane protein, inferred for ABFAE pathway compare
Xcc-8004.4830.1 -0.7 -2.0 hypothetical protein compare
Xcc-8004.1204.1 -0.7 -1.7 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Xcc-8004.4735.1 -0.7 -3.0 FIG01210211: hypothetical protein compare
Xcc-8004.3433.1 -0.7 -3.4 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Xcc-8004.2169.1 -0.7 -1.8 Preprotein translocase subunit YajC (TC 3.A.5.1.1) compare
Xcc-8004.3859.1 -0.7 -1.9 Two-component system regulatory protein compare
Xcc-8004.1372.1 -0.7 -1.5 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.2920.1 -0.7 -3.9 Ferrous iron transport protein B compare
Xcc-8004.2318.1 -0.7 -3.4 Argininosuccinate synthase (EC 6.3.4.5) compare
Xcc-8004.1434.1 -0.7 -1.0 FIG000859: hypothetical protein YebC compare
Xcc-8004.1933.1 -0.7 -1.5 FIG01209679: hypothetical protein compare
Xcc-8004.4671.1 -0.7 -2.2 FIG01212254: hypothetical protein compare
Xcc-8004.4427.1 -0.7 -1.7 General secretion pathway protein J compare
Xcc-8004.4853.1 -0.7 -2.1 hypothetical protein compare
Xcc-8004.364.1 -0.7 -2.3 hypothetical protein compare
Xcc-8004.679.1 -0.7 -1.1 23Sr RNA gene compare
Xcc-8004.4761.1 -0.7 -2.7 FIG01211042: hypothetical protein compare
Xcc-8004.4884.1 -0.7 -1.6 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
Xcc-8004.932.1 -0.7 -3.2 histidine kinase/response regulator hybrid protein compare
Xcc-8004.602.1 -0.7 -1.4 DnaJ related chaperone compare
Xcc-8004.930.1 -0.7 -4.0 Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) compare
Xcc-8004.4694.1 -0.7 -1.3 FIG01210824: hypothetical protein compare
Xcc-8004.3426.1 -0.7 -3.1 Chaperone protein DnaJ compare
Xcc-8004.1334.1 -0.7 -1.0 hypothetical protein compare
Xcc-8004.1503.1 -0.7 -2.7 twitching motility protein PilH compare
Xcc-8004.4384.1 -0.7 -1.6 hypothetical protein compare
Xcc-8004.3374.1 -0.7 -2.2 hypothetical protein compare
Xcc-8004.3329.1 -0.7 -2.1 Exodeoxyribonuclease I (EC 3.1.11.1) compare
Xcc-8004.5065.1 -0.6 -3.5 Mg/Co/Ni transporter MgtE / CBS domain compare
Xcc-8004.1058.1 -0.6 -1.7 acetolactate synthase, regulatory subunit (EC 2.2.1.6) (from data) compare
Xcc-8004.3231.1 -0.6 -1.7 hypothetical protein compare
Xcc-8004.3955.1 -0.6 -2.5 HflK protein compare
Xcc-8004.4790.1 -0.6 -1.4 N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47) compare
Xcc-8004.463.1 -0.6 -1.8 2,3-dihydroxy-2,3-dihydro-phenylpropionate dehydrogenase (EC 1.3.1.-) compare
Xcc-8004.2793.1 -0.6 -3.1 Flagellar biosynthesis protein FliS compare
Xcc-8004.2358.1 -0.6 -3.4 Segregation and condensation protein A compare
Xcc-8004.171.1 -0.6 -1.0 hypothetical protein compare
Xcc-8004.4752.1 -0.6 -0.9 DNA topoisomerase I (EC 5.99.1.2) compare
Xcc-8004.3647.1 -0.6 -2.6 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Xcc-8004.1904.1 -0.6 -1.4 two-component system regulatory protein compare
Xcc-8004.609.1 -0.6 -1.3 hypothetical protein compare
Xcc-8004.236.1 -0.6 -1.2 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) compare
Xcc-8004.2532.1 -0.6 -2.4 hypothetical protein compare
Xcc-8004.4292.1 -0.6 -1.4 Taurine transport ATP-binding protein TauB compare
Xcc-8004.1326.1 -0.6 -2.1 hypothetical protein compare
Xcc-8004.456.1 -0.6 -1.0 carbonic anhydrase, family 3 compare
Xcc-8004.4510.1 -0.6 -0.9 ATP binding component of ABC-transporter compare
Xcc-8004.5335.1 -0.6 -1.1 FIG01214241: hypothetical protein compare
Xcc-8004.4529.1 -0.6 -1.0 FIG01210979: hypothetical protein compare
Xcc-8004.4019.1 -0.6 -1.7 Molybdenum cofactor biosynthesis protein MoaD compare
Xcc-8004.1747.1 -0.6 -1.6 FIG01210249: hypothetical protein compare
Xcc-8004.3754.1 -0.6 -1.4 Tryptophan 2,3-dioxygenase (EC 1.13.11.11) compare
Xcc-8004.94.1 -0.6 -1.0 Transcriptional regulator, LuxR family compare
Xcc-8004.776.1 -0.6 -2.0 Fatty acid desaturase compare
Xcc-8004.1137.1 -0.6 -0.9 FIG006231: RNA-binding protein compare
Xcc-8004.5343.1 -0.6 -2.7 hypothetical protein compare
Xcc-8004.732.1 -0.6 -2.5 iron-chelator utilization protein compare
Xcc-8004.3394.1 -0.6 -1.8 hypothetical protein compare
Xcc-8004.4789.1 -0.6 -2.8 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Xcc-8004.5025.1 -0.6 -2.9 FIG01211797: hypothetical protein compare
Xcc-8004.1519.1 -0.6 -2.5 FIG01210820: hypothetical protein compare
Xcc-8004.5367.1 -0.5 -2.5 Uncharacterized ABC transporter, auxiliary component YrbC compare
Xcc-8004.559.1 -0.5 -1.0 FIG01213048: hypothetical protein compare
Xcc-8004.269.1 -0.5 -1.6 FIG136845: Rhodanese-related sulfurtransferase compare
Xcc-8004.108.1 -0.5 -1.7 Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1) compare
Xcc-8004.2422.1 -0.5 -1.2 Putative stress-responsive transcriptional regulator compare
Xcc-8004.378.1 -0.5 -2.5 Xanthine/uracil/thiamine/ascorbate permease family protein compare
Xcc-8004.409.1 -0.5 -1.8 hypothetical protein compare
Xcc-8004.4879.1 -0.5 -1.9 FIG01209773: hypothetical protein compare
Xcc-8004.2922.1 -0.5 -0.9 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.649.1 -0.5 -1.0 hypothetical protein compare
Xcc-8004.4877.1 -0.5 -4.8 Membrane proteins related to metalloendopeptidases compare
Xcc-8004.1746.1 -0.5 -2.5 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family compare
Xcc-8004.2713.1 -0.5 -0.6 Nitrate/nitrite transporter compare
Xcc-8004.4306.1 -0.5 -0.8 hypothetical protein compare
Xcc-8004.4302.1 -0.5 -2.6 Ribokinase (EC 2.7.1.15) compare
Xcc-8004.3834.1 -0.5 -1.8 Pathogenicity-related protein compare
Xcc-8004.4982.1 -0.5 -0.9 Protein yjbJ compare
Xcc-8004.1855.1 -0.5 -2.2 FIG01211692: hypothetical protein compare
Xcc-8004.1000.1 -0.5 -1.3 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.4225.1 -0.5 -0.8 Regulator of nucleoside diphosphate kinase compare
Xcc-8004.2387.1 -0.5 -1.1 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Xcc-8004.4824.1 -0.5 -3.7 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.3855.1 -0.5 -3.0 FIG01209965: hypothetical protein compare
Xcc-8004.740.1 -0.5 -1.7 Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25) compare
Xcc-8004.3863.1 -0.5 -1.9 Septum site-determining protein MinD compare
Xcc-8004.3696.1 -0.5 -1.5 hypothetical protein compare
Xcc-8004.2415.1 -0.5 -3.4 FIG137360: hypothetical protein compare
Xcc-8004.5328.1 -0.5 -1.7 Mobile element protein compare
Xcc-8004.480.1 -0.5 -1.8 3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2) compare
Xcc-8004.3091.1 -0.5 -2.1 hypothetical protein compare
Xcc-8004.5239.1 -0.5 -1.7 Hexuronate transporter compare
Xcc-8004.2333.1 -0.5 -2.7 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Xcc-8004.1662.1 -0.5 -3.4 RNA polymerase sigma-54 factor RpoN compare
Xcc-8004.2404.1 -0.5 -1.6 hypothetical protein compare
Xcc-8004.3170.1 -0.5 -2.1 FIG01210267: hypothetical protein compare
Xcc-8004.1135.1 -0.5 -0.9 FIG01210448: hypothetical protein compare
Xcc-8004.4630.1 -0.5 -1.4 FIG01210108: hypothetical protein compare
Xcc-8004.5114.1 -0.5 -2.4 ATP-dependent DNA helicase UvrD/PcrA compare
Xcc-8004.2734.1 -0.5 -1.7 Mlr7403 protein compare
Xcc-8004.4321.1 -0.5 -2.1 FIG01211153: hypothetical protein compare
Xcc-8004.4281.1 -0.5 -1.6 hypothetical protein compare
Xcc-8004.3598.1 -0.5 -2.4 Ferredoxin II compare
Xcc-8004.4568.1 -0.5 -0.8 FIG01210028: hypothetical protein compare
Xcc-8004.1362.1 -0.5 -1.4 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) compare
Xcc-8004.921.1 -0.5 -2.4 FIG01210236: hypothetical protein compare
Xcc-8004.2844.1 -0.5 -1.9 FIG01212716: hypothetical protein compare
Xcc-8004.4455.1 -0.5 -1.4 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Xcc-8004.4185.1 -0.5 -1.4 Acylphosphate phosphohydrolase (EC 3.6.1.7), putative compare
Xcc-8004.4833.1 -0.5 -1.0 FIG01111678: hypothetical protein compare
Xcc-8004.4013.1 -0.5 -0.8 FIG000557: hypothetical protein co-occurring with RecR compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in control experiments