Experiment set4IT061 for Acidovorax sp. GW101-3H11

Compare to:

LB, pH6

200 most important genes:

  gene name fitness t score description  
Ac3H11_2395 -3.9 -3.8 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Ac3H11_4450 -2.8 -2.3 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Ac3H11_4401 -2.5 -9.3 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) compare
Ac3H11_3081 -2.3 -3.0 Methyl-accepting chemotaxis protein compare
Ac3H11_3341 -2.3 -3.7 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
Ac3H11_4705 -2.1 -8.6 3-dehydroquinate synthase (EC 4.2.3.4) compare
Ac3H11_376 -2.1 -1.5 DNA-binding protein HU-beta compare
Ac3H11_1556 -2.1 -7.8 HpcH/HpaI aldolase compare
Ac3H11_2170 -2.1 -2.1 Methionine ABC transporter ATP-binding protein compare
Ac3H11_2492 -1.9 -4.4 FIG004453: protein YceG like compare
Ac3H11_2320 -1.7 -8.1 Transcriptional regulator, XRE family compare
Ac3H11_319 -1.7 -2.2 tRNA dimethylallyltransferase (EC 2.5.1.75) compare
Ac3H11_4925 -1.6 -4.7 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Ac3H11_3417 -1.6 -1.4 hypothetical protein compare
Ac3H11_2030 -1.5 -6.6 General secretion pathway protein D / Type II secretion outermembrane pore forming protein (PulD) compare
Ac3H11_2518 -1.5 -10.6 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Ac3H11_3630 -1.5 -2.8 Undecaprenyl-diphosphatase (EC 3.6.1.27) compare
Ac3H11_4310 -1.4 -1.0 FIG00458971: hypothetical protein compare
Ac3H11_4828 -1.4 -2.6 Ferredoxin compare
Ac3H11_2076 -1.4 -4.0 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Ac3H11_3926 -1.3 -3.1 putative membrane protein compare
Ac3H11_2035 -1.3 -2.0 General secretion pathway protein J compare
Ac3H11_4054 -1.3 -5.4 General secretion pathway protein F / Type II secretory pathway, component PulF compare
Ac3H11_458 -1.3 -3.5 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
Ac3H11_1453 -1.3 -3.0 Preprotein translocase subunit SecG (TC 3.A.5.1.1) compare
Ac3H11_568 -1.3 -2.0 tRNA-Leu-CAG compare
Ac3H11_2970 -1.3 -4.1 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Ac3H11_456 -1.3 -1.6 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Ac3H11_1256 -1.3 -1.6 Transcriptional regulator, MarR family compare
Ac3H11_3066 -1.2 -1.4 hypothetical protein compare
Ac3H11_2029 -1.2 -3.5 General secretion pathway protein E / Type II secretion cytoplasmic ATP binding protein (PulE, ATPase) compare
Ac3H11_4006 -1.1 -9.1 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Ac3H11_3538 -1.1 -1.9 hypothetical protein compare
Ac3H11_2531 -1.1 -1.4 transcriptional regulator, Crp/Fnr family compare
Ac3H11_2403 -1.1 -4.2 Alkanesulfonate utilization operon LysR-family regulator CbI compare
Ac3H11_1869 -1.1 -1.1 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-); Histidinol-phosphatase (EC 3.1.3.15) compare
Ac3H11_3079 -1.1 -3.3 FIG01210206: hypothetical protein compare
Ac3H11_2925 -1.1 -5.3 Chorismate synthase (EC 4.2.3.5) compare
Ac3H11_3925 -1.1 -3.0 FIG00932626: hypothetical protein compare
Ac3H11_3502 -1.0 -0.9 hypothetical protein compare
Ac3H11_1702 -1.0 -4.2 LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent compare
Ac3H11_2464 -1.0 -3.8 ATPase component BioM of energizing module of biotin ECF transporter compare
Ac3H11_47 -1.0 -1.6 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) compare
Ac3H11_781 -1.0 -1.5 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Ac3H11_2322 -1.0 -8.7 2-methylcitrate synthase (EC 2.3.3.5) compare
Ac3H11_2326 -1.0 -1.9 Methylisocitrate lyase (EC 4.1.3.30) compare
Ac3H11_4271 -1.0 -3.4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45) compare
Ac3H11_3781 -1.0 -1.3 hypothetical protein compare
Ac3H11_3585 -0.9 -1.1 Permeases of the major facilitator superfamily compare
Ac3H11_2608 -0.9 -2.5 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
Ac3H11_370 -0.9 -1.6 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Ac3H11_3590 -0.9 -1.2 Carbon monoxide dehydrogenase small chain (EC 1.2.99.2) compare
Ac3H11_2157 -0.9 -2.8 hypothetical protein compare
Ac3H11_4711 -0.9 -3.2 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Ac3H11_3882 -0.9 -1.2 Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone compare
Ac3H11_345 -0.9 -1.4 hypothetical protein compare
Ac3H11_87 -0.9 -2.0 hypothetical protein compare
Ac3H11_3765 -0.9 -1.2 Transcriptional regulator, IclR family compare
Ac3H11_3241 -0.9 -2.8 Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Ac3H11_2983 -0.8 -1.9 tRNA-Glu-TTC compare
Ac3H11_2604 -0.8 -1.2 Granule-associated protein compare
Ac3H11_2038 -0.8 -1.6 General secretion pathway protein G compare
Ac3H11_3543 -0.8 -1.9 hypothetical protein compare
Ac3H11_4024 -0.8 -5.1 Sugar kinases, ribokinase family compare
Ac3H11_934 -0.8 -3.8 Cell division trigger factor (EC 5.2.1.8) compare
Ac3H11_2021 -0.8 -0.8 hypothetical protein compare
Ac3H11_4241 -0.8 -1.4 hypothetical protein compare
Ac3H11_3833 -0.8 -1.5 probable membrane protein YPO2051 compare
Ac3H11_2034 -0.8 -1.1 General secretion pathway protein K compare
Ac3H11_1801 -0.8 -4.9 HflK protein compare
Ac3H11_4669 -0.8 -1.9 AMP nucleosidase (EC 3.2.2.4) compare
Ac3H11_2571 -0.8 -2.1 Outer membrane protein A precursor compare
Ac3H11_3981 -0.8 -2.6 UPF0301 protein YqgE compare
Ac3H11_412 -0.8 -3.0 3'-to-5' exoribonuclease RNase R compare
Ac3H11_3169 -0.8 -0.9 hypothetical protein compare
Ac3H11_733 -0.8 -3.8 serine/threonine protein kinase compare
Ac3H11_4905 -0.8 -2.0 hypothetical protein compare
Ac3H11_1975 -0.8 -0.9 Cysteine synthase (EC 2.5.1.47) compare
Ac3H11_373 -0.8 -2.4 Excinuclease ABC subunit C compare
Ac3H11_4264 -0.8 -2.5 GTPase and tRNA-U34 5-formylation enzyme TrmE compare
Ac3H11_1679 -0.8 -2.2 Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) compare
Ac3H11_4950 -0.7 -1.9 COG0662: Mannose-6-phosphate isomerase compare
Ac3H11_2524 -0.7 -2.7 Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) compare
Ac3H11_386 -0.7 -1.1 ATP-dependent RNA helicase RhlE compare
Ac3H11_4956 -0.7 -2.6 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA compare
Ac3H11_1755 -0.7 -1.2 FIG004556: membrane metalloprotease compare
Ac3H11_839 -0.7 -2.5 transcriptional regulator, MerR family compare
Ac3H11_207 -0.7 -3.3 FIG137360: hypothetical protein compare
Ac3H11_2991 -0.7 -6.4 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) compare
Ac3H11_1957 -0.7 -2.7 Glutamate Aspartate transport system permease protein GltK (TC 3.A.1.3.4) compare
Ac3H11_3230 -0.7 -2.4 Gluconate utilization system Gnt-I transcriptional repressor compare
Ac3H11_1034 -0.7 -2.5 Nitrite-sensitive transcriptional repressor NsrR compare
Ac3H11_525 -0.7 -4.4 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Ac3H11_4864 -0.7 -1.4 hypothetical protein compare
Ac3H11_2745 -0.7 -1.3 Transcriptional regulator, TetR family compare
Ac3H11_1955 -0.7 -2.5 Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4) compare
Ac3H11_2805 -0.7 -0.9 IncF plasmid conjugative transfer pilus assembly protein TraK compare
Ac3H11_1372 -0.7 -1.9 Flagellar basal-body rod protein FlgG compare
Ac3H11_4060 -0.7 -5.6 Cyanophycin synthase (EC 6.3.2.29)(EC 6.3.2.30) compare
Ac3H11_4858 -0.7 -1.3 Septum site-determining protein MinD compare
Ac3H11_4827 -0.6 -5.1 Dipeptide transport system permease protein DppB (TC 3.A.1.5.2) compare
Ac3H11_2399 -0.6 -1.4 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare
Ac3H11_2032 -0.6 -1.1 General secretion pathway protein M compare
Ac3H11_1569 -0.6 -3.9 Translation elongation factor LepA compare
Ac3H11_4771 -0.6 -3.8 Glutamate 5-kinase (EC 2.7.2.11) compare
Ac3H11_3589 -0.6 -0.8 FIG00538094: hypothetical protein compare
Ac3H11_2120 -0.6 -1.4 C-type cytochrome biogenesis protein ResA (thioredoxin) compare
Ac3H11_4059 -0.6 -5.5 Lipid A export ATP-binding/permease protein MsbA compare
Ac3H11_1693 -0.6 -5.2 ABC transporter for glutamine/isoleucine/leucine/phenylalanine/proline/serine/tyrosine, ATPase component 1 (from data) compare
Ac3H11_2633 -0.6 -3.4 Membrane alanine aminopeptidase N (EC 3.4.11.2) compare
Ac3H11_2416 -0.6 -3.5 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Ac3H11_1692 -0.6 -4.0 ABC transporter for glutamine/isoleucine/leucine/phenylalanine/proline/serine/tyrosine, ATPase component 2 (from data) compare
Ac3H11_242 -0.6 -1.5 Mobile element protein compare
Ac3H11_4095 -0.6 -4.7 Nitrogen regulation protein NR(I) compare
Ac3H11_2586 -0.6 -2.8 Na(+) H(+) antiporter subunit F compare
Ac3H11_3224 -0.6 -1.9 hypothetical protein compare
Ac3H11_132 -0.6 -4.7 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) compare
Ac3H11_619 -0.6 -0.8 hypothetical protein compare
Ac3H11_3599 -0.6 -1.1 Response regulator compare
Ac3H11_938 -0.6 -2.4 FIG00582348: hypothetical protein compare
Ac3H11_2478 -0.6 -0.7 hypothetical protein compare
Ac3H11_1784 -0.6 -1.3 5-nucleotidase SurE (EC 3.1.3.5) compare
Ac3H11_3008 -0.6 -4.6 Transcriptional regulator, AraC family compare
Ac3H11_42 -0.6 -2.1 Peptidyl-prolyl cis-trans isomerase PpiA precursor (EC 5.2.1.8) compare
Ac3H11_2862 -0.6 -3.3 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Ac3H11_4506 -0.6 -2.2 Transcriptional regulator, IclR family compare
Ac3H11_2121 -0.6 -1.5 putative c'cytochrome compare
Ac3H11_901 -0.6 -1.1 Beta-lactamase (EC 3.5.2.6) compare
Ac3H11_4845 -0.6 -3.2 Transcriptional regulator, TetR family compare
Ac3H11_3578 -0.6 -2.2 Carboxynorspermidine dehydrogenase compare
Ac3H11_110 -0.6 -1.3 FIG01198471: hypothetical protein compare
Ac3H11_3682 -0.6 -2.1 hypothetical protein compare
Ac3H11_4823 -0.6 -4.9 Peptide/opine/nickel uptake family ABC transporter, periplasmic substrate-binding protein compare
Ac3H11_4058 -0.6 -2.8 required for efflux of an amino acid polymer (from data) compare
Ac3H11_4093 -0.6 -4.3 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
Ac3H11_1184 -0.6 -0.9 4-carboxy-4-hydroxy-2-oxoadipate aldolase (EC 4.1.3.17) compare
Ac3H11_4185 -0.5 -0.7 hypothetical protein compare
Ac3H11_1960 -0.5 -2.3 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases compare
Ac3H11_711 -0.5 -2.1 Glutathione synthetase (EC 6.3.2.3) compare
Ac3H11_4306 -0.5 -2.1 Predicted transcriptional regulators compare
Ac3H11_1694 -0.5 -4.9 ABC transporter for glutamine/isoleucine/leucine/phenylalanine/proline/serine/tyrosine, permease component 2 (from data) compare
Ac3H11_2713 -0.5 -1.0 Tricarboxylate transport protein TctC compare
Ac3H11_2108 -0.5 -2.7 FIG094192: hypothetical protein compare
Ac3H11_2419 -0.5 -1.3 Iojap protein compare
Ac3H11_2036 -0.5 -0.6 General secretion pathway protein I compare
Ac3H11_1610 -0.5 -1.3 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) compare
Ac3H11_4897 -0.5 -1.6 ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17) compare
Ac3H11_1272 -0.5 -1.9 hypothetical protein compare
Ac3H11_2391 -0.5 -2.1 L-asparaginase (EC 3.5.1.1) compare
Ac3H11_4091 -0.5 -2.4 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) compare
Ac3H11_774 -0.5 -1.9 Transcriptional regulator, LysR family compare
Ac3H11_4943 -0.5 -1.6 FIG01198430: hypothetical protein compare
Ac3H11_346 -0.5 -1.4 hypothetical protein compare
Ac3H11_1839 -0.5 -0.9 Ribokinase (EC 2.7.1.15) compare
Ac3H11_2532 -0.5 -3.2 FIG00581870: hypothetical protein compare
Ac3H11_3898 -0.5 -2.6 Acyl dehydratase compare
Ac3H11_393 -0.5 -1.3 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Ac3H11_4252 -0.5 -2.0 FIG005429: hypothetical protein compare
Ac3H11_4061 -0.5 -4.3 Cyanophycin synthase (EC 6.3.2.29)(EC 6.3.2.30) compare
Ac3H11_3459 -0.5 -3.6 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Ac3H11_4382 -0.5 -0.8 hypothetical protein compare
Ac3H11_2101 -0.5 -2.2 Proposed lipoate regulatory protein YbeD compare
Ac3H11_2392 -0.5 -2.7 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Ac3H11_4725 -0.5 -0.8 hypothetical protein compare
Ac3H11_3246 -0.5 -0.9 hypothetical protein compare
Ac3H11_4070 -0.5 -1.1 hypothetical protein compare
Ac3H11_2632 -0.5 -0.9 Beta-phosphoglucomutase (EC 5.4.2.6) compare
Ac3H11_129 -0.5 -1.3 hypothetical protein compare
Ac3H11_4772 -0.5 -3.4 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Ac3H11_548 -0.5 -0.6 hypothetical protein compare
Ac3H11_2673 -0.5 -2.5 histone-like protein compare
Ac3H11_4074 -0.5 -3.9 Feruloyl-CoA synthetase compare
Ac3H11_2797 -0.5 -1.3 helix-turn-helix domain protein compare
Ac3H11_1802 -0.5 -3.3 HflC protein compare
Ac3H11_2533 -0.5 -2.4 Permease of the drug/metabolite transporter (DMT) superfamily compare
Ac3H11_4448 -0.5 -2.1 RND efflux system, inner membrane transporter CmeB compare
Ac3H11_3846 -0.5 -1.2 Protein containing domains DUF403 compare
Ac3H11_3009 -0.5 -2.7 Acetoacetate--CoA ligase (EC 6.2.1.16) (from data) compare
Ac3H11_3371 -0.5 -2.5 DNA repair protein RadA compare
Ac3H11_526 -0.5 -1.5 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Ac3H11_4826 -0.5 -2.8 Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) compare
Ac3H11_4633 -0.5 -0.8 putative outer membrane autotransporter barrel compare
Ac3H11_3606 -0.5 -1.3 Mlr1171 protein compare
Ac3H11_1514 -0.5 -1.7 LSU ribosomal protein L9p compare
Ac3H11_4197 -0.5 -0.7 hypothetical protein compare
Ac3H11_3740 -0.5 -1.7 Gluconate permease compare
Ac3H11_1044 -0.5 -1.6 tRNA-Leu-TAG compare
Ac3H11_437 -0.5 -2.2 Transcription elongation factor GreA compare
Ac3H11_2525 -0.5 -2.4 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Ac3H11_4097 -0.5 -3.7 Oligopeptidase A (EC 3.4.24.70) compare
Ac3H11_3455 -0.5 -3.3 FOG: TPR repeat compare
Ac3H11_3015 -0.5 -0.7 Probable transmembrane protein compare
Ac3H11_2250 -0.4 -1.3 Cytochrome c oxidase polypeptide II (EC 1.9.3.1) compare
Ac3H11_2483 -0.4 -1.6 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Ac3H11_2567 -0.4 -1.1 hypothetical protein compare
Ac3H11_4911 -0.4 -2.2 hypothetical protein compare
Ac3H11_1069 -0.4 -1.3 Transcriptional regulator PhnF compare
Ac3H11_1122 -0.4 -0.6 Pyrrolidone-carboxylate peptidase (EC 3.4.19.3) compare
Ac3H11_3361 -0.4 -1.4 Copper sensory histidine kinase CpxA compare
Ac3H11_3499 -0.4 -1.9 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Acidovorax sp. GW101-3H11 in pH experiments