Experiment set4IT061 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x - replicate 3

200 most important genes:

  gene name fitness t score description  
Xcc-8004.623.1 -4.2 -2.9 Phosphoserine phosphatase compare
Xcc-8004.4824.1 -3.6 -13.1 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.1336.1 -3.5 -7.4 two-component system sensor protein compare
Xcc-8004.1241.1 -3.3 -5.4 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.4286.1 -3.1 -8.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Xcc-8004.3395.1 -3.0 -4.0 Transcriptional regulator, GntR family compare
Xcc-8004.5192.1 -3.0 -11.1 hypothetical protein compare
Xcc-8004.884.1 -2.8 -6.3 Rod shape-determining protein MreD compare
Xcc-8004.1236.1 -2.8 -6.1 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.2921.1 -2.7 -3.2 ferrous iron transport protein compare
Xcc-8004.271.1 -2.4 -3.8 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.5193.1 -2.4 -16.2 Outer membrane protein assembly factor YaeT precursor compare
Xcc-8004.2406.1 -2.4 -10.6 Manganese transport protein MntH compare
Xcc-8004.1763.1 -2.2 -4.1 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.3433.1 -2.1 -7.3 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Xcc-8004.1282.1 -2.1 -6.5 sulfur deprivation response regulator compare
Xcc-8004.1871.1 -2.1 -3.6 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) compare
Xcc-8004.4732.1 -2.1 -2.3 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Xcc-8004.3346.1 -2.0 -3.0 hypothetical protein compare
Xcc-8004.1568.1 -2.0 -2.4 Glycine cleavage system H protein compare
Xcc-8004.4630.1 -1.9 -2.6 FIG01210108: hypothetical protein compare
Xcc-8004.2920.1 -1.8 -7.7 Ferrous iron transport protein B compare
Xcc-8004.3722.1 -1.8 -1.7 HrpB7 protein compare
Xcc-8004.3726.1 -1.8 -2.5 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) compare
Xcc-8004.171.1 -1.7 -2.0 hypothetical protein compare
Xcc-8004.1727.1 -1.7 -2.1 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.4620.1 -1.7 -7.6 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.2217.1 -1.7 -3.5 FIG01209779: hypothetical protein compare
Xcc-8004.907.1 -1.7 -10.8 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Xcc-8004.4457.1 -1.7 -4.8 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Xcc-8004.4039.1 -1.7 -3.0 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.4112.1 -1.6 -3.6 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.4908.1 -1.6 -3.0 hypothetical protein compare
Xcc-8004.2335.1 -1.6 -5.3 Transport ATP-binding protein CydC compare
Xcc-8004.4738.1 -1.6 -8.0 Lipopolysaccharide core biosynthesis glycosyl transferase compare
Xcc-8004.2449.1 -1.5 -4.7 Glucokinase (EC 2.7.1.2) compare
Xcc-8004.4616.1 -1.5 -6.0 Sensor histidine kinase compare
Xcc-8004.1359.1 -1.4 -5.0 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.4441.1 -1.4 -3.4 Tyrosine recombinase XerD compare
Xcc-8004.1511.1 -1.3 -2.4 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.5326.1 -1.3 -1.9 Mobile element protein compare
Xcc-8004.4596.1 -1.3 -7.4 hypothetical protein compare
Xcc-8004.4225.1 -1.3 -2.2 Regulator of nucleoside diphosphate kinase compare
Xcc-8004.130.1 -1.3 -5.2 hypothetical protein compare
Xcc-8004.2385.1 -1.3 -7.2 lipopolysaccharide core biosynthesis protein compare
Xcc-8004.2079.1 -1.3 -3.0 Outer membrane protein GumB, involved in the export of xanthan compare
Xcc-8004.4485.1 -1.3 -6.6 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Xcc-8004.659.1 -1.2 -2.4 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.495.1 -1.2 -4.6 EpiH/GdmH-related protein compare
Xcc-8004.3703.1 -1.2 -2.7 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.2386.1 -1.2 -7.9 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) compare
Xcc-8004.968.1 -1.2 -7.1 Periplasmic thiol:disulfide interchange protein DsbA compare
Xcc-8004.2387.1 -1.2 -1.6 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Xcc-8004.4025.1 -1.2 -7.3 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) compare
Xcc-8004.4026.1 -1.2 -4.9 FIG01209666: hypothetical protein compare
Xcc-8004.3054.1 -1.2 -1.3 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.3676.1 -1.1 -2.6 Translation elongation factor LepA compare
Xcc-8004.689.1 -1.1 -1.5 ATP-dependent DNA helicase recG (EC 3.6.1.-) compare
Xcc-8004.5051.1 -1.1 -2.8 2-dehydropantoate 2-reductase (EC 1.1.1.169) compare
Xcc-8004.2266.1 -1.1 -1.9 FIG01211351: hypothetical protein compare
Xcc-8004.914.1 -1.1 -5.5 tail-specific protease compare
Xcc-8004.3882.1 -1.1 -2.1 hypothetical protein compare
Xcc-8004.4210.1 -1.1 -3.7 Thymidine phosphorylase (EC 2.4.2.4) compare
Xcc-8004.4737.1 -1.1 -3.5 Putative glycerophosphate (or ribitol phosphate) transferase relatede to lipopolysaccharide core biosynthesis compare
Xcc-8004.270.1 -1.1 -4.2 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Xcc-8004.500.1 -1.1 -2.1 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Xcc-8004.4844.1 -1.1 -1.1 FIG01210764: hypothetical protein compare
Xcc-8004.932.1 -1.1 -4.6 histidine kinase/response regulator hybrid protein compare
Xcc-8004.4853.1 -1.1 -2.6 hypothetical protein compare
Xcc-8004.3230.1 -1.1 -2.3 Phage DNA invertase compare
Xcc-8004.2334.1 -1.1 -4.4 Transport ATP-binding protein CydD compare
Xcc-8004.1808.1 -1.1 -2.2 L-fuco-beta-pyranose dehydrogenase (EC 1.1.1.122) compare
Xcc-8004.3794.1 -1.0 -1.4 Mobile element protein compare
Xcc-8004.2055.1 -1.0 -1.6 Mobile element protein compare
Xcc-8004.5343.1 -1.0 -4.3 hypothetical protein compare
Xcc-8004.4168.1 -1.0 -2.8 GTP-binding and nucleic acid-binding protein YchF compare
Xcc-8004.637.1 -1.0 -5.0 Bacterioferritin-associated ferredoxin compare
Xcc-8004.234.1 -1.0 -5.9 cardiolipin synthase compare
Xcc-8004.1491.1 -1.0 -7.1 Glycosyltransferase compare
Xcc-8004.4486.1 -1.0 -7.0 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Xcc-8004.610.1 -1.0 -2.3 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.4467.1 -1.0 -4.3 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Xcc-8004.764.1 -1.0 -1.9 FIG01213873: hypothetical protein compare
Xcc-8004.1001.1 -1.0 -2.6 FIG01213217: hypothetical protein compare
Xcc-8004.4473.1 -1.0 -7.3 FIG01212400: hypothetical protein compare
Xcc-8004.1486.1 -1.0 -2.2 Coenzyme PQQ synthesis protein D compare
Xcc-8004.738.1 -1.0 -1.4 Malonate decarboxylase gamma subunit compare
Xcc-8004.3862.1 -0.9 -3.7 Septum site-determining protein MinC compare
Xcc-8004.5268.1 -0.9 -2.0 Mobile element protein compare
Xcc-8004.679.1 -0.9 -2.5 23Sr RNA gene compare
Xcc-8004.3442.1 -0.9 -1.4 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1772.1 -0.9 -2.4 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.1436.1 -0.9 -1.0 Holliday junction DNA helicase RuvA compare
Xcc-8004.4752.1 -0.9 -1.4 DNA topoisomerase I (EC 5.99.1.2) compare
Xcc-8004.4514.1 -0.9 -6.3 Glycosyltransferase compare
Xcc-8004.3188.1 -0.9 -2.2 Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE compare
Xcc-8004.5039.1 -0.9 -2.9 FIG032621: Hydrolase, alpha/beta hydrolase fold family compare
Xcc-8004.5367.1 -0.9 -3.6 Uncharacterized ABC transporter, auxiliary component YrbC compare
Xcc-8004.4517.1 -0.9 -5.6 Cystathionine gamma-lyase (EC 4.4.1.1) compare
Xcc-8004.1615.1 -0.9 -1.3 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.5231.1 -0.9 -2.5 hypothetical protein compare
Xcc-8004.1904.1 -0.9 -1.2 two-component system regulatory protein compare
Xcc-8004.2169.1 -0.9 -2.2 Preprotein translocase subunit YajC (TC 3.A.5.1.1) compare
Xcc-8004.4605.1 -0.9 -0.9 FIG001943: hypothetical protein YajQ compare
Xcc-8004.4466.1 -0.9 -3.5 ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C compare
Xcc-8004.2561.1 -0.9 -4.6 FIG01213638: hypothetical protein compare
Xcc-8004.337.1 -0.9 -1.5 ATPase, AFG1 family compare
Xcc-8004.3532.1 -0.9 -2.4 Bacterioferritin compare
Xcc-8004.5098.1 -0.9 -2.4 hypothetical protein compare
Xcc-8004.3049.1 -0.9 -4.7 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.5368.1 -0.8 -2.1 FIG01210868: hypothetical protein compare
Xcc-8004.4529.1 -0.8 -1.3 FIG01210979: hypothetical protein compare
Xcc-8004.3855.1 -0.8 -4.4 FIG01209965: hypothetical protein compare
Xcc-8004.108.1 -0.8 -2.2 Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1) compare
Xcc-8004.1581.1 -0.8 -7.5 hypothetical protein compare
Xcc-8004.2358.1 -0.8 -4.3 Segregation and condensation protein A compare
Xcc-8004.4948.1 -0.8 -1.3 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Xcc-8004.1790.1 -0.8 -1.8 Zinc uptake regulation protein ZUR compare
Xcc-8004.1334.1 -0.8 -1.1 hypothetical protein compare
Xcc-8004.1841.1 -0.8 -2.1 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) compare
Xcc-8004.4481.1 -0.8 -3.3 hypothetical protein compare
Xcc-8004.4465.1 -0.8 -3.3 ABC transporter ATP-binding protein USSDB6B compare
Xcc-8004.636.1 -0.8 -4.6 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Xcc-8004.4102.1 -0.8 -1.7 FIG01211949: hypothetical protein compare
Xcc-8004.4508.1 -0.8 -3.6 Kinase compare
Xcc-8004.4836.1 -0.8 -2.9 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
Xcc-8004.4275.1 -0.8 -2.8 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Xcc-8004.3304.1 -0.8 -1.1 FIG01211108: hypothetical protein compare
Xcc-8004.4534.1 -0.8 -2.2 Phosphoglycolate phosphatase (EC 3.1.3.18) compare
Xcc-8004.1890.1 -0.8 -3.2 hypothetical protein compare
Xcc-8004.2620.1 -0.8 -4.1 NfuA Fe-S protein maturation compare
Xcc-8004.4477.1 -0.8 -1.1 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Xcc-8004.2332.1 -0.8 -3.5 Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Xcc-8004.2831.1 -0.8 -4.0 Flagellar synthesis regulator FleN compare
Xcc-8004.3394.1 -0.8 -1.7 hypothetical protein compare
Xcc-8004.4833.1 -0.8 -1.9 FIG01111678: hypothetical protein compare
Xcc-8004.4705.1 -0.8 -3.3 ABC transporter ATP-binding protein compare
Xcc-8004.3595.1 -0.7 -1.0 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Xcc-8004.2212.1 -0.7 -2.2 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) compare
Xcc-8004.4464.1 -0.7 -4.2 ABC-type transport system involved in resistance to organic solvents, permease component USSDB6A compare
Xcc-8004.4000.1 -0.7 -1.6 COG1399 protein, clustered with ribosomal protein L32p compare
Xcc-8004.773.1 -0.7 -2.5 Transcriptional regulator marR family compare
Xcc-8004.3321.1 -0.7 -1.0 FIG01209847: hypothetical protein compare
Xcc-8004.1133.1 -0.7 -0.9 Rubredoxin compare
Xcc-8004.3310.1 -0.7 -2.4 Chromosome partition protein smc compare
Xcc-8004.3752.1 -0.7 -1.4 Isopenicillin N epimerase (EC 5.1.1.17) compare
Xcc-8004.94.1 -0.7 -0.8 Transcriptional regulator, LuxR family compare
Xcc-8004.5205.1 -0.7 -2.3 FIG01210461: hypothetical protein compare
Xcc-8004.2333.1 -0.7 -4.1 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Xcc-8004.3700.1 -0.7 -2.0 FIG01211160: hypothetical protein compare
Xcc-8004.3980.1 -0.7 -2.4 2-methylcitrate synthase (EC 2.3.3.5) compare
Xcc-8004.3942.1 -0.7 -1.5 RelE/StbE replicon stabilization toxin compare
Xcc-8004.3154.1 -0.7 -2.1 Probable low-affinity inorganic phosphate transporter compare
Xcc-8004.165.1 -0.7 -0.8 hypothetical protein compare
Xcc-8004.4510.1 -0.7 -1.0 ATP binding component of ABC-transporter compare
Xcc-8004.2495.1 -0.7 -1.1 hypothetical protein compare
Xcc-8004.144.1 -0.7 -1.4 Putative protein-S-isoprenylcysteine methyltransferase compare
Xcc-8004.4298.1 -0.7 -2.4 Hemin uptake protein compare
Xcc-8004.4982.1 -0.7 -1.2 Protein yjbJ compare
Xcc-8004.236.1 -0.7 -1.3 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) compare
Xcc-8004.432.1 -0.7 -1.4 hypothetical protein compare
Xcc-8004.4503.1 -0.7 -2.5 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) compare
Xcc-8004.344.1 -0.7 -2.2 FIG01211436: hypothetical protein compare
Xcc-8004.3661.1 -0.7 -3.1 5'-methylthioadenosine phosphorylase (EC 2.4.2.28) compare
Xcc-8004.2110.1 -0.7 -0.8 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.117.1 -0.7 -1.3 FIG042594: DUF1550 domain-containing protein compare
Xcc-8004.3655.1 -0.7 -1.2 FIG01210025: hypothetical protein compare
Xcc-8004.5086.1 -0.6 -2.0 membrane protein, inferred for ABFAE pathway compare
Xcc-8004.4775.1 -0.6 -3.4 Cell division protein FtsX compare
Xcc-8004.3981.1 -0.6 -2.6 Methylisocitrate lyase (EC 4.1.3.30) compare
Xcc-8004.1243.1 -0.6 -3.3 Pyruvate kinase (EC 2.7.1.40) compare
Xcc-8004.1660.1 -0.6 -0.8 PTS system nitrogen-specific IIA component, PtsN compare
Xcc-8004.4506.1 -0.6 -3.9 membrane protein WxcD compare
Xcc-8004.930.1 -0.6 -3.8 Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) compare
Xcc-8004.4976.1 -0.6 -4.5 hypothetical protein compare
Xcc-8004.3734.1 -0.6 -1.9 Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components) compare
Xcc-8004.3647.1 -0.6 -2.1 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Xcc-8004.4877.1 -0.6 -5.5 Membrane proteins related to metalloendopeptidases compare
Xcc-8004.3739.1 -0.6 -1.8 Type III secretion protein HrpE compare
Xcc-8004.5064.1 -0.6 -2.2 hypothetical protein compare
Xcc-8004.4296.1 -0.6 -1.5 Hemin transport protein compare
Xcc-8004.5365.1 -0.6 -2.9 Uncharacterized ABC transporter, permease component YrbE compare
Xcc-8004.5046.1 -0.6 -2.4 Phenol hydroxylase compare
Xcc-8004.3692.1 -0.6 -3.0 Beta-galactosidase (EC 3.2.1.23) compare
Xcc-8004.2922.1 -0.6 -1.2 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.255.1 -0.6 -1.8 Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1) compare
Xcc-8004.1434.1 -0.6 -1.0 FIG000859: hypothetical protein YebC compare
Xcc-8004.118.1 -0.6 -2.1 FIG037995: Hypothetical protein compare
Xcc-8004.1448.1 -0.6 -3.5 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Xcc-8004.5024.1 -0.6 -1.5 FIG01210241: hypothetical protein compare
Xcc-8004.3296.1 -0.6 -1.6 Histidine ammonia-lyase (EC 4.3.1.3) compare
Xcc-8004.5047.1 -0.6 -1.3 ABC-type multidrug transport system, ATPase component compare
Xcc-8004.5366.1 -0.6 -4.5 Uncharacterized ABC transporter, periplasmic component YrbD compare
Xcc-8004.4776.1 -0.6 -1.1 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Xcc-8004.846.1 -0.6 -1.4 Protein of unknown function DUF484 compare
Xcc-8004.1308.1 -0.6 -1.8 FIG01211990: hypothetical protein compare
Xcc-8004.683.1 -0.6 -1.7 hypothetical protein compare
Xcc-8004.4796.1 -0.6 -1.6 PhnB protein compare
Xcc-8004.1720.1 -0.6 -1.4 UPF0301 protein YqgE compare
Xcc-8004.2890.1 -0.6 -2.7 Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24) compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in supernatant experiments

For supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB across organisms