Experiment set4IT060 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x - replicate 2

200 most important genes:

  gene name fitness t score description  
Xcc-8004.623.1 -4.0 -2.7 Phosphoserine phosphatase compare
Xcc-8004.1336.1 -3.7 -7.0 two-component system sensor protein compare
Xcc-8004.271.1 -3.6 -3.4 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.884.1 -3.3 -6.6 Rod shape-determining protein MreD compare
Xcc-8004.4286.1 -3.2 -7.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Xcc-8004.4824.1 -2.8 -11.1 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.1241.1 -2.7 -5.0 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.5193.1 -2.6 -16.0 Outer membrane protein assembly factor YaeT precursor compare
Xcc-8004.5192.1 -2.4 -10.2 hypothetical protein compare
Xcc-8004.2406.1 -2.4 -10.0 Manganese transport protein MntH compare
Xcc-8004.3346.1 -2.3 -2.2 hypothetical protein compare
Xcc-8004.4112.1 -2.2 -2.9 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.2011.1 -2.2 -3.2 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.2217.1 -2.2 -3.5 FIG01209779: hypothetical protein compare
Xcc-8004.3433.1 -2.1 -7.3 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Xcc-8004.1615.1 -2.1 -1.9 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.1871.1 -2.0 -3.9 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) compare
Xcc-8004.1236.1 -1.9 -5.2 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.3395.1 -1.9 -3.3 Transcriptional regulator, GntR family compare
Xcc-8004.2346.1 -1.9 -2.1 ABC transporter involved in cytochrome c biogenesis, CcmB subunit compare
Xcc-8004.1282.1 -1.8 -5.5 sulfur deprivation response regulator compare
Xcc-8004.4737.1 -1.8 -4.3 Putative glycerophosphate (or ribitol phosphate) transferase relatede to lipopolysaccharide core biosynthesis compare
Xcc-8004.4620.1 -1.8 -7.4 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.1763.1 -1.8 -3.6 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.4026.1 -1.7 -5.5 FIG01209666: hypothetical protein compare
Xcc-8004.4000.1 -1.7 -2.9 COG1399 protein, clustered with ribosomal protein L32p compare
Xcc-8004.1616.1 -1.7 -1.9 Shikimate kinase I (EC 2.7.1.71) compare
Xcc-8004.495.1 -1.7 -5.4 EpiH/GdmH-related protein compare
Xcc-8004.4844.1 -1.6 -1.4 FIG01210764: hypothetical protein compare
Xcc-8004.2920.1 -1.6 -6.7 Ferrous iron transport protein B compare
Xcc-8004.4457.1 -1.6 -4.3 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Xcc-8004.1511.1 -1.6 -3.0 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.907.1 -1.5 -9.0 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Xcc-8004.5326.1 -1.4 -1.8 Mobile element protein compare
Xcc-8004.4210.1 -1.4 -3.8 Thymidine phosphorylase (EC 2.4.2.4) compare
Xcc-8004.4503.1 -1.4 -4.4 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) compare
Xcc-8004.4616.1 -1.4 -5.7 Sensor histidine kinase compare
Xcc-8004.2335.1 -1.4 -4.2 Transport ATP-binding protein CydC compare
Xcc-8004.2334.1 -1.4 -5.1 Transport ATP-binding protein CydD compare
Xcc-8004.1727.1 -1.4 -1.9 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.4738.1 -1.4 -7.0 Lipopolysaccharide core biosynthesis glycosyl transferase compare
Xcc-8004.2266.1 -1.3 -1.8 FIG01211351: hypothetical protein compare
Xcc-8004.1359.1 -1.3 -4.6 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.5087.1 -1.3 -2.6 FIG027190: Putative transmembrane protein compare
Xcc-8004.2386.1 -1.3 -7.9 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) compare
Xcc-8004.1832.1 -1.3 -2.7 FIG01210449: hypothetical protein compare
Xcc-8004.2921.1 -1.3 -2.3 ferrous iron transport protein compare
Xcc-8004.3054.1 -1.3 -1.8 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.3862.1 -1.2 -4.3 Septum site-determining protein MinC compare
Xcc-8004.3703.1 -1.2 -2.5 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.4732.1 -1.2 -1.5 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Xcc-8004.3431.1 -1.2 -1.9 DNA repair protein RecN compare
Xcc-8004.456.1 -1.2 -1.1 carbonic anhydrase, family 3 compare
Xcc-8004.1401.1 -1.2 -3.1 hypothetical protein compare
Xcc-8004.4596.1 -1.2 -6.4 hypothetical protein compare
Xcc-8004.4455.1 -1.2 -3.1 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Xcc-8004.4025.1 -1.2 -6.9 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) compare
Xcc-8004.4039.1 -1.2 -2.2 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.5125.1 -1.2 -3.0 LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent compare
Xcc-8004.4948.1 -1.1 -1.4 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Xcc-8004.2618.1 -1.1 -1.8 Ferric siderophore transport system, periplasmic binding protein TonB compare
Xcc-8004.1491.1 -1.1 -8.1 Glycosyltransferase compare
Xcc-8004.5352.1 -1.1 -1.9 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Xcc-8004.1126.1 -1.1 -2.6 Electron transfer protein azurin I compare
Xcc-8004.5365.1 -1.1 -4.6 Uncharacterized ABC transporter, permease component YrbE compare
Xcc-8004.29.1 -1.1 -4.0 Cell wall endopeptidase, family M23/M37 compare
Xcc-8004.1108.1 -1.1 -1.7 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Xcc-8004.3244.1 -1.1 -2.1 DNA repair protein RadC compare
Xcc-8004.93.1 -1.1 -2.2 FIG01211857: hypothetical protein compare
Xcc-8004.932.1 -1.1 -3.6 histidine kinase/response regulator hybrid protein compare
Xcc-8004.270.1 -1.1 -3.8 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Xcc-8004.914.1 -1.1 -4.0 tail-specific protease compare
Xcc-8004.4510.1 -1.0 -1.3 ATP binding component of ABC-transporter compare
Xcc-8004.1906.1 -1.0 -2.0 lipoprotein compare
Xcc-8004.3792.1 -1.0 -1.3 Mobile element protein compare
Xcc-8004.2519.1 -1.0 -3.2 FIG01211007: hypothetical protein compare
Xcc-8004.4485.1 -1.0 -5.5 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Xcc-8004.2385.1 -1.0 -5.8 lipopolysaccharide core biosynthesis protein compare
Xcc-8004.776.1 -1.0 -2.9 Fatty acid desaturase compare
Xcc-8004.4441.1 -1.0 -2.7 Tyrosine recombinase XerD compare
Xcc-8004.4739.1 -1.0 -2.7 Lipid A core - O-antigen ligase and related enzymes compare
Xcc-8004.1587.1 -1.0 -1.9 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Xcc-8004.968.1 -1.0 -5.5 Periplasmic thiol:disulfide interchange protein DsbA compare
Xcc-8004.3208.1 -1.0 -1.0 Methyltransferase type 12 compare
Xcc-8004.1164.1 -1.0 -2.1 Transcriptional repressor, BlaI/MecI family compare
Xcc-8004.2672.1 -1.0 -1.6 hypothetical protein compare
Xcc-8004.4775.1 -1.0 -4.9 Cell division protein FtsX compare
Xcc-8004.740.1 -1.0 -2.6 Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25) compare
Xcc-8004.4486.1 -0.9 -6.7 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Xcc-8004.4568.1 -0.9 -1.2 FIG01210028: hypothetical protein compare
Xcc-8004.3923.1 -0.9 -1.8 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.4697.1 -0.9 -1.8 FIG01210654: hypothetical protein compare
Xcc-8004.1677.1 -0.9 -2.6 FIG01209993: hypothetical protein compare
Xcc-8004.4497.1 -0.9 -2.1 Mobile element protein compare
Xcc-8004.1200.1 -0.9 -1.4 hypothetical protein compare
Xcc-8004.3333.1 -0.9 -2.6 5'-nucleotidase (EC 3.1.3.5) compare
Xcc-8004.703.1 -0.9 -1.0 hypothetical protein compare
Xcc-8004.574.1 -0.9 -3.8 Di-/tripeptide transporter compare
Xcc-8004.4473.1 -0.9 -7.0 FIG01212400: hypothetical protein compare
Xcc-8004.5367.1 -0.9 -3.4 Uncharacterized ABC transporter, auxiliary component YrbC compare
Xcc-8004.4514.1 -0.9 -5.8 Glycosyltransferase compare
Xcc-8004.4464.1 -0.9 -4.8 ABC-type transport system involved in resistance to organic solvents, permease component USSDB6A compare
Xcc-8004.4556.1 -0.9 -1.1 Lipoprotein releasing system ATP-binding protein LolD compare
Xcc-8004.3310.1 -0.9 -2.6 Chromosome partition protein smc compare
Xcc-8004.4481.1 -0.9 -3.3 hypothetical protein compare
Xcc-8004.130.1 -0.9 -3.7 hypothetical protein compare
Xcc-8004.2060.1 -0.9 -1.3 Mobile element protein compare
Xcc-8004.4752.1 -0.9 -1.3 DNA topoisomerase I (EC 5.99.1.2) compare
Xcc-8004.3957.1 -0.8 -2.9 DnaJ-class molecular chaperone CbpA compare
Xcc-8004.4508.1 -0.8 -3.6 Kinase compare
Xcc-8004.4168.1 -0.8 -2.3 GTP-binding and nucleic acid-binding protein YchF compare
Xcc-8004.5368.1 -0.8 -1.5 FIG01210868: hypothetical protein compare
Xcc-8004.4630.1 -0.8 -1.7 FIG01210108: hypothetical protein compare
Xcc-8004.3072.1 -0.8 -1.3 hypothetical protein compare
Xcc-8004.731.1 -0.8 -2.7 hypothetical protein compare
Xcc-8004.3303.1 -0.8 -1.8 Methylthioribose-1-phosphate isomerase (EC 5.3.1.23) compare
Xcc-8004.5202.1 -0.8 -2.3 Twin-arginine translocation protein TatC compare
Xcc-8004.1205.1 -0.8 -1.5 hypothetical protein compare
Xcc-8004.2434.1 -0.8 -2.0 hypothetical protein compare
Xcc-8004.234.1 -0.8 -4.5 cardiolipin synthase compare
Xcc-8004.3788.1 -0.8 -2.2 Protein of unknown function DUF1428 compare
Xcc-8004.3049.1 -0.8 -4.3 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.438.1 -0.8 -2.5 hypothetical protein compare
Xcc-8004.3696.1 -0.8 -2.6 hypothetical protein compare
Xcc-8004.3817.1 -0.8 -2.9 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Xcc-8004.1434.1 -0.7 -1.1 FIG000859: hypothetical protein YebC compare
Xcc-8004.2282.1 -0.7 -1.8 tRNA:Cm32/Um32 methyltransferase compare
Xcc-8004.2259.1 -0.7 -2.3 PhbF compare
Xcc-8004.5168.1 -0.7 -0.8 hypothetical protein compare
Xcc-8004.3882.1 -0.7 -1.3 hypothetical protein compare
Xcc-8004.878.1 -0.7 -2.9 Sugar kinase compare
Xcc-8004.4292.1 -0.7 -1.3 Taurine transport ATP-binding protein TauB compare
Xcc-8004.2579.1 -0.7 -1.7 Transcriptional regulator in PFGI-1-like cluster compare
Xcc-8004.812.1 -0.7 -1.8 histidine kinase-response regulator hybrid protein compare
Xcc-8004.2332.1 -0.7 -3.0 Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Xcc-8004.5213.1 -0.7 -2.7 Xylose isomerase (EC 5.3.1.5) compare
Xcc-8004.4466.1 -0.7 -3.5 ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C compare
Xcc-8004.585.1 -0.7 -1.1 Na(+) H(+) antiporter subunit F compare
Xcc-8004.2561.1 -0.7 -3.5 FIG01213638: hypothetical protein compare
Xcc-8004.3230.1 -0.7 -1.5 Phage DNA invertase compare
Xcc-8004.637.1 -0.7 -3.0 Bacterioferritin-associated ferredoxin compare
Xcc-8004.5343.1 -0.7 -2.9 hypothetical protein compare
Xcc-8004.236.1 -0.7 -1.2 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) compare
Xcc-8004.4517.1 -0.7 -3.8 Cystathionine gamma-lyase (EC 4.4.1.1) compare
Xcc-8004.807.1 -0.7 -1.7 FIG01212592: hypothetical protein compare
Xcc-8004.5047.1 -0.7 -1.1 ABC-type multidrug transport system, ATPase component compare
Xcc-8004.5185.1 -0.7 -1.5 Gluconokinase (EC 2.7.1.12) compare
Xcc-8004.589.1 -0.7 -1.4 hypothetical protein compare
Xcc-8004.4227.1 -0.7 -1.7 ThiJ/PfpI family protein compare
Xcc-8004.393.1 -0.7 -2.0 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases compare
Xcc-8004.4105.1 -0.7 -1.6 Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) compare
Xcc-8004.4321.1 -0.7 -2.5 FIG01211153: hypothetical protein compare
Xcc-8004.810.1 -0.7 -2.2 Endonuclease compare
Xcc-8004.1568.1 -0.7 -1.3 Glycine cleavage system H protein compare
Xcc-8004.871.1 -0.7 -2.4 FIG01209691: hypothetical protein compare
Xcc-8004.4340.1 -0.7 -1.7 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-) / Thiamin-phosphate pyrophosphorylase-like protein compare
Xcc-8004.4170.1 -0.7 -1.1 LSU ribosomal protein L25p compare
Xcc-8004.3863.1 -0.7 -2.2 Septum site-determining protein MinD compare
Xcc-8004.3855.1 -0.7 -3.5 FIG01209965: hypothetical protein compare
Xcc-8004.4877.1 -0.7 -5.9 Membrane proteins related to metalloendopeptidases compare
Xcc-8004.970.1 -0.7 -1.7 Probable cytochrome c2 compare
Xcc-8004.4298.1 -0.7 -1.7 Hemin uptake protein compare
Xcc-8004.556.1 -0.6 -1.7 component of multidrug efflux system compare
Xcc-8004.4561.1 -0.6 -2.3 Sensor histidine kinase compare
Xcc-8004.1015.1 -0.6 -1.7 ThiJ/PfpI family protein compare
Xcc-8004.4102.1 -0.6 -0.7 FIG01211949: hypothetical protein compare
Xcc-8004.2644.1 -0.6 -0.8 hypothetical protein compare
Xcc-8004.4693.1 -0.6 -1.4 hypothetical protein compare
Xcc-8004.5263.1 -0.6 -2.5 hypothetical protein compare
Xcc-8004.5114.1 -0.6 -2.9 ATP-dependent DNA helicase UvrD/PcrA compare
Xcc-8004.3663.1 -0.6 -1.9 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Xcc-8004.2564.1 -0.6 -2.9 FIG00464742: hypothetical protein compare
Xcc-8004.1657.1 -0.6 -1.5 PTS system, mannose-specific IIA component compare
Xcc-8004.4013.1 -0.6 -1.3 FIG000557: hypothetical protein co-occurring with RecR compare
Xcc-8004.2357.1 -0.6 -1.7 Segregation and condensation protein B compare
Xcc-8004.2169.1 -0.6 -1.6 Preprotein translocase subunit YajC (TC 3.A.5.1.1) compare
Xcc-8004.4768.1 -0.6 -1.1 FIG01210642: hypothetical protein compare
Xcc-8004.2139.1 -0.6 -2.5 FIG01213750: hypothetical protein compare
Xcc-8004.1365.1 -0.6 -0.6 FIG01211058: hypothetical protein compare
Xcc-8004.3726.1 -0.6 -1.1 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) compare
Xcc-8004.235.1 -0.6 -1.8 ComA operon protein 2 compare
Xcc-8004.3647.1 -0.6 -2.0 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Xcc-8004.1337.1 -0.6 -2.1 FIG001353: Acetyltransferase compare
Xcc-8004.1117.1 -0.6 -1.5 hypothetical protein compare
Xcc-8004.4833.1 -0.6 -1.1 FIG01111678: hypothetical protein compare
Xcc-8004.5231.1 -0.6 -2.0 hypothetical protein compare
Xcc-8004.1581.1 -0.6 -5.4 hypothetical protein compare
Xcc-8004.638.1 -0.6 -3.5 Bacterioferritin compare
Xcc-8004.5019.1 -0.6 -1.2 FIG01210147: hypothetical protein compare
Xcc-8004.973.1 -0.6 -1.8 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) compare
Xcc-8004.4501.1 -0.6 -2.4 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Xcc-8004.4046.1 -0.6 -3.5 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.1118.1 -0.6 -0.6 hypothetical protein compare
Xcc-8004.4534.1 -0.6 -2.0 Phosphoglycolate phosphatase (EC 3.1.3.18) compare
Xcc-8004.4254.1 -0.6 -1.6 Protocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8) compare
Xcc-8004.1536.1 -0.6 -2.0 Virulence protein compare
Xcc-8004.1305.1 -0.6 -2.2 FIG01212099: hypothetical protein compare
Xcc-8004.4465.1 -0.6 -2.4 ABC transporter ATP-binding protein USSDB6B compare
Xcc-8004.2343.1 -0.6 -0.9 Cytochrome c-type biogenesis protein CcmE, heme chaperone compare
Xcc-8004.3103.1 -0.6 -1.3 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in supernatant experiments

For supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB across organisms