Experiment set4IT060 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x - replicate 2

200 most detrimental genes:

  gene name fitness t score description  
Xcc-8004.99.1 +1.8 2.6 FIG01211055: hypothetical protein compare
Xcc-8004.1082.1 +1.3 2.3 FIG01211203: hypothetical protein compare
Xcc-8004.1222.1 +1.2 1.5 Glyoxalase family protein compare
Xcc-8004.3723.1 +1.2 3.2 hypothetical protein compare
Xcc-8004.3471.1 +1.2 1.7 FIG01211539: hypothetical protein compare
Xcc-8004.5122.1 +1.2 2.2 hypothetical protein compare
Xcc-8004.1414.1 +1.2 1.6 Lactoylglutathione lyase and related lyases compare
Xcc-8004.5021.1 +1.2 2.0 FIG01211474: hypothetical protein compare
Xcc-8004.340.1 +1.1 2.9 Organic hydroperoxide resistance protein compare
Xcc-8004.4558.1 +1.1 2.1 ABC transporter permease compare
Xcc-8004.3595.1 +1.1 2.4 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Xcc-8004.1914.1 +1.0 2.0 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Xcc-8004.5226.1 +1.0 2.9 FIG01212167: hypothetical protein compare
Xcc-8004.410.1 +1.0 1.3 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1858.1 +1.0 1.3 FIG01211170: hypothetical protein compare
Xcc-8004.155.1 +1.0 1.8 FIG01210803: hypothetical protein compare
Xcc-8004.1768.1 +0.9 2.1 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Xcc-8004.4327.1 +0.9 1.2 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.2861.1 +0.9 1.7 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Xcc-8004.3721.1 +0.9 1.9 Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) compare
Xcc-8004.1133.1 +0.9 1.1 Rubredoxin compare
Xcc-8004.360.1 +0.8 1.9 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) decarboxylase compare
Xcc-8004.1361.1 +0.8 1.6 Probable component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB) compare
Xcc-8004.726.1 +0.8 1.2 Putative preQ0 transporter compare
Xcc-8004.1048.1 +0.8 2.4 Transcriptional regulator lysR family compare
Xcc-8004.1064.1 +0.8 2.4 hypothetical protein compare
Xcc-8004.5201.1 +0.8 2.3 FIG01211164: hypothetical protein compare
Xcc-8004.1328.1 +0.8 1.6 FIG01210090: hypothetical protein compare
Xcc-8004.2574.1 +0.8 1.7 FIG004780: hypothetical protein in PFGI-1-like cluster compare
Xcc-8004.3360.1 +0.8 3.7 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Xcc-8004.995.1 +0.8 2.0 rhamnogalacturonase B compare
Xcc-8004.1771.1 +0.8 1.9 Positive regulator of CheA protein activity (CheW) compare
Xcc-8004.3531.1 +0.8 1.9 Thiopurine S-methyltransferase (EC 2.1.1.67) compare
Xcc-8004.4253.1 +0.8 2.0 Transcriptional regulator, LysR family compare
Xcc-8004.603.1 +0.7 2.8 hypothetical protein compare
Xcc-8004.2879.1 +0.7 1.0 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.1720.1 +0.7 2.1 UPF0301 protein YqgE compare
Xcc-8004.5167.1 +0.7 2.4 L-fuconate dehydratase (EC 4.2.1.68) compare
Xcc-8004.649.1 +0.7 1.4 hypothetical protein compare
Xcc-8004.4963.1 +0.7 3.6 Acriflavin resistance protein compare
Xcc-8004.1839.1 +0.7 1.2 FIG01210863: hypothetical protein compare
Xcc-8004.5334.1 +0.7 1.8 hypothetical protein compare
Xcc-8004.1502.1 +0.7 1.4 twitching motility protein PilG compare
Xcc-8004.2495.1 +0.7 1.6 hypothetical protein compare
Xcc-8004.3642.1 +0.7 1.1 FIG01211227: hypothetical protein compare
Xcc-8004.1280.1 +0.7 1.7 Ferredoxin, 2Fe-2S compare
Xcc-8004.1400.1 +0.7 1.8 Cobalamin synthase (EC 2.7.8.26) compare
Xcc-8004.2808.1 +0.7 2.7 Flagellar hook-basal body complex protein FliE compare
Xcc-8004.618.1 +0.7 2.0 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Xcc-8004.4691.1 +0.6 2.1 hypothetical protein compare
Xcc-8004.3832.1 +0.6 1.4 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Xcc-8004.3211.1 +0.6 1.8 protein of unknown function DUF88 compare
Xcc-8004.3653.1 +0.6 0.8 FIG01212122: hypothetical protein compare
Xcc-8004.1961.1 +0.6 1.1 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Xcc-8004.3320.1 +0.6 1.1 FIG01209869: hypothetical protein compare
Xcc-8004.2871.1 +0.6 2.2 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.3674.1 +0.6 1.6 FIG01209931: hypothetical protein compare
Xcc-8004.2529.1 +0.6 2.1 FIG01210734: hypothetical protein compare
Xcc-8004.787.1 +0.6 0.8 Rrf2 family transcriptional regulator, group III compare
Xcc-8004.3498.1 +0.6 1.1 hypothetical protein compare
Xcc-8004.2096.1 +0.6 2.6 FIG003671: Metal-dependent hydrolase compare
Xcc-8004.3409.1 +0.6 1.7 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.666.1 +0.6 2.0 CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase-related protein compare
Xcc-8004.852.1 +0.6 2.3 ATP-dependent hsl protease ATP-binding subunit HslU compare
Xcc-8004.5140.1 +0.6 1.7 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Xcc-8004.2339.1 +0.6 0.9 Cytochrome c heme lyase subunit CcmH compare
Xcc-8004.3699.1 +0.6 1.4 hypothetical protein compare
Xcc-8004.4264.1 +0.6 1.4 ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17) compare
Xcc-8004.4001.1 +0.6 1.4 FIG146278: Maf/YceF/YhdE family protein compare
Xcc-8004.602.1 +0.6 1.2 DnaJ related chaperone compare
Xcc-8004.353.1 +0.6 1.4 FIG01210121: hypothetical protein compare
Xcc-8004.1691.1 +0.6 2.1 FIG019175: putative membrane protein compare
Xcc-8004.1052.1 +0.6 2.1 hypothetical protein compare
Xcc-8004.4098.1 +0.5 2.2 FIG01211222: hypothetical protein compare
Xcc-8004.2166.1 +0.5 2.1 Transcriptional regulator, AsnC family compare
Xcc-8004.1316.1 +0.5 1.0 hypothetical protein compare
Xcc-8004.2470.1 +0.5 1.9 Ferric siderophore transport system, biopolymer transport protein ExbB compare
Xcc-8004.409.1 +0.5 1.7 hypothetical protein compare
Xcc-8004.3087.1 +0.5 1.9 FIG01211583: hypothetical protein compare
Xcc-8004.2773.1 +0.5 2.9 FIG01210950: hypothetical protein compare
Xcc-8004.4801.1 +0.5 2.1 FIG01211532: hypothetical protein compare
Xcc-8004.80.1 +0.5 1.4 hypothetical protein compare
Xcc-8004.4871.1 +0.5 1.2 Phage tail completion protein compare
Xcc-8004.946.1 +0.5 1.5 General secretion pathway protein H compare
Xcc-8004.4615.1 +0.5 2.1 FIG01210966: hypothetical protein compare
Xcc-8004.386.1 +0.5 1.8 LysR family transcriptional regulator STM3121 compare
Xcc-8004.5349.1 +0.5 0.9 FIG01210492: hypothetical protein compare
Xcc-8004.1808.1 +0.5 1.3 L-fuco-beta-pyranose dehydrogenase (EC 1.1.1.122) compare
Xcc-8004.3608.1 +0.5 1.7 FIG024285: Hypothetical protein compare
Xcc-8004.94.1 +0.5 0.6 Transcriptional regulator, LuxR family compare
Xcc-8004.1086.1 +0.5 1.1 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3222.1 +0.5 1.0 Mobile element protein compare
Xcc-8004.2652.1 +0.5 1.3 response regulator compare
Xcc-8004.178.1 +0.5 0.8 hypothetical protein compare
Xcc-8004.4937.1 +0.5 1.7 FIG01211718: hypothetical protein compare
Xcc-8004.3505.1 +0.5 1.7 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.4625.1 +0.5 1.5 FIG01210439: hypothetical protein compare
Xcc-8004.1026.1 +0.5 1.7 Tricarboxylate transport transcriptional regulator TctD compare
Xcc-8004.4248.1 +0.5 1.7 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Xcc-8004.981.1 +0.5 1.4 FrmR: Negative transcriptional regulator of formaldehyde detoxification operon compare
Xcc-8004.3582.1 +0.5 1.0 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.4423.1 +0.5 1.1 General secretion pathway protein N compare
Xcc-8004.117.1 +0.5 1.6 FIG042594: DUF1550 domain-containing protein compare
Xcc-8004.2417.1 +0.5 2.3 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-) compare
Xcc-8004.412.1 +0.5 2.1 Putative protein-S-isoprenylcysteine methyltransferase compare
Xcc-8004.983.1 +0.5 1.7 Glutathione-dependent formaldehyde-activating enzyme (EC 4.4.1.22) compare
Xcc-8004.2475.1 +0.5 1.4 Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) compare
Xcc-8004.1334.1 +0.5 0.8 hypothetical protein compare
Xcc-8004.1893.1 +0.5 2.0 Alkaline phosphatase (EC 3.1.3.1) compare
Xcc-8004.5280.1 +0.5 0.9 hypothetical protein compare
Xcc-8004.3376.1 +0.5 1.3 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Xcc-8004.3733.1 +0.5 1.1 Type III secretion inner membrane protein (YscQ,homologous to flagellar export components) compare
Xcc-8004.3035.1 +0.5 1.0 Aspartate racemase (EC 5.1.1.13) compare
Xcc-8004.2811.1 +0.5 2.1 Flagellar assembly protein FliH compare
Xcc-8004.1374.1 +0.5 0.9 Lipoprotein, putative compare
Xcc-8004.3212.1 +0.5 1.8 phage-related integrase compare
Xcc-8004.924.1 +0.5 0.8 FIG01200701: possible membrane protein compare
Xcc-8004.1935.1 +0.5 2.4 Dienelactone hydrolase family compare
Xcc-8004.186.1 +0.5 3.5 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Xcc-8004.1623.1 +0.5 1.9 probable lipoprotein compare
Xcc-8004.4661.1 +0.5 1.4 Protein YciE compare
Xcc-8004.1822.1 +0.5 1.4 Transcriptional regulator, MarR family compare
Xcc-8004.2724.1 +0.5 1.8 FIG01212801: hypothetical protein compare
Xcc-8004.1639.1 +0.5 2.1 hypothetical protein compare
Xcc-8004.1835.1 +0.5 3.0 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-) compare
Xcc-8004.4902.1 +0.5 1.2 FIG01211036: hypothetical protein compare
Xcc-8004.4442.1 +0.5 1.5 FIG01212138: hypothetical protein compare
Xcc-8004.421.1 +0.4 0.8 Xanthomonadin biosynthesis related protein compare
Xcc-8004.1329.1 +0.4 1.6 Virulence regulator compare
Xcc-8004.3454.1 +0.4 2.0 Phage-related integrase compare
Xcc-8004.873.1 +0.4 1.3 S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) compare
Xcc-8004.2085.1 +0.4 1.8 Xanthan biosynthesis acetyltransferase GumG compare
Xcc-8004.5380.1 +0.4 2.1 FIG01212194: hypothetical protein compare
Xcc-8004.619.1 +0.4 1.6 Nitrilotriacetate monooxygenase component B (EC 1.14.13.-) compare
Xcc-8004.3715.1 +0.4 1.1 FIG01212258: hypothetical protein compare
Xcc-8004.3751.1 +0.4 1.7 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.3590.1 +0.4 0.8 FIG01211013: hypothetical protein compare
Xcc-8004.3408.1 +0.4 1.5 FIG01210869: hypothetical protein compare
Xcc-8004.192.1 +0.4 1.9 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.2411.1 +0.4 2.2 Small-conductance mechanosensitive channel compare
Xcc-8004.3246.1 +0.4 1.5 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.577.1 +0.4 2.1 Transcriptional regulator, MarR family compare
Xcc-8004.4746.1 +0.4 2.7 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake compare
Xcc-8004.2239.1 +0.4 1.2 Positive regulator of CheA protein activity (CheW) compare
Xcc-8004.1163.1 +0.4 1.7 Ferric siderophore transport system, periplasmic binding protein TonB compare
Xcc-8004.3304.1 +0.4 0.9 FIG01211108: hypothetical protein compare
Xcc-8004.1466.1 +0.4 1.2 Histone acetyltransferase HPA2 and related acetyltransferases compare
Xcc-8004.4247.1 +0.4 0.9 Transcriptional regulator, MarR family compare
Xcc-8004.4216.1 +0.4 2.0 ADP-ribose pyrophosphatase (EC 3.6.1.13) compare
Xcc-8004.3379.1 +0.4 1.6 Transcriptional regulator, ArsR family / Methyltransferase fusion compare
Xcc-8004.2537.1 +0.4 1.6 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Xcc-8004.4255.1 +0.4 1.0 Protocatechuate 4,5-dioxygenase beta chain (EC 1.13.11.8) compare
Xcc-8004.4241.1 +0.4 1.1 cytidine and deoxycytidylate deaminase family protein compare
Xcc-8004.704.1 +0.4 1.5 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54) compare
Xcc-8004.1380.1 +0.4 0.7 COG2827: putative endonuclease containing a URI domain compare
Xcc-8004.71.1 +0.4 1.0 hypothetical protein compare
Xcc-8004.5118.1 +0.4 1.2 4-carboxy-4-hydroxy-2-oxoadipate aldolase (EC 4.1.3.17) compare
Xcc-8004.784.1 +0.4 2.1 Putative outer membrane lipoprotein compare
Xcc-8004.3401.1 +0.4 0.8 FIG01209914: hypothetical protein compare
Xcc-8004.1737.1 +0.4 2.2 McrBC 5-methylcytosine restriction system component compare
Xcc-8004.4318.1 +0.4 1.5 hypothetical protein compare
Xcc-8004.3451.1 +0.4 0.9 hypothetical protein compare
Xcc-8004.3178.1 +0.4 1.7 cytochrome like B561 compare
Xcc-8004.1784.1 +0.4 1.3 FIG01210539: hypothetical protein compare
Xcc-8004.706.1 +0.4 1.9 Propionyl-CoA:succinyl-CoA transferase compare
Xcc-8004.751.1 +0.4 2.1 FIG01210776: hypothetical protein compare
Xcc-8004.542.1 +0.4 2.4 Malto-oligosyltrehalose synthase (EC 5.4.99.15) compare
Xcc-8004.4188.1 +0.4 1.3 Trp repressor binding protein compare
Xcc-8004.5403.1 +0.4 1.6 Phosphatase compare
Xcc-8004.2153.1 +0.4 1.8 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) compare
Xcc-8004.4204.1 +0.4 0.9 FIG01210014: hypothetical protein compare
Xcc-8004.3403.1 +0.4 1.8 Fumarate hydratase class II (EC 4.2.1.2) compare
Xcc-8004.1933.1 +0.4 1.0 FIG01209679: hypothetical protein compare
Xcc-8004.5338.1 +0.4 2.2 FIG01210434: hypothetical protein compare
Xcc-8004.2931.1 +0.4 1.3 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Xcc-8004.350.1 +0.4 0.7 hypothetical protein compare
Xcc-8004.3325.1 +0.4 1.8 3-hydroxyanthranilate 3,4-dioxygenase (EC 1.13.11.6) compare
Xcc-8004.1116.1 +0.4 1.9 Potassium voltage-gated channel subfamily KQT; possible potassium channel, VIC family compare
Xcc-8004.4708.1 +0.4 1.5 Putative translation initiation inhibitor, yjgF family compare
Xcc-8004.4283.1 +0.4 0.4 Diacylglycerol kinase (EC 2.7.1.107) compare
Xcc-8004.3897.1 +0.4 1.2 RecA/RadA recombinase compare
Xcc-8004.394.1 +0.4 1.0 FIG01211006: hypothetical protein compare
Xcc-8004.3879.1 +0.4 1.1 hypothetical protein compare
Xcc-8004.1897.1 +0.4 1.0 Acyl-CoA thioester hydrolase compare
Xcc-8004.2530.1 +0.4 2.0 FIG01210404: hypothetical protein compare
Xcc-8004.934.1 +0.4 0.8 FolM Alternative dihydrofolate reductase 1 compare
Xcc-8004.332.1 +0.4 1.8 FIG01210876: hypothetical protein compare
Xcc-8004.2783.1 +0.4 0.6 FIG01209963: hypothetical protein compare
Xcc-8004.667.1 +0.4 1.3 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) compare
Xcc-8004.4224.1 +0.4 1.2 Hydrogen peroxide-inducible genes activator compare
Xcc-8004.2392.1 +0.4 1.7 hypothetical protein compare
Xcc-8004.2175.1 +0.4 1.3 1-phosphofructokinase (EC 2.7.1.56) compare
Xcc-8004.3326.1 +0.4 1.4 FIG01212390: hypothetical protein compare
Xcc-8004.532.1 +0.4 1.7 ABC1 family protein compare
Xcc-8004.58.1 +0.4 1.9 Regulatory sensor-transducer, BlaR1/MecR1 family compare
Xcc-8004.2987.1 +0.4 1.3 hypothetical protein compare
Xcc-8004.2326.1 +0.4 1.5 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Xcc-8004.2638.1 +0.4 1.8 Zona occludens toxin compare
Xcc-8004.2533.1 +0.4 1.0 Candidate type III effector Hop protein compare
Xcc-8004.4245.1 +0.4 1.5 FIG01213330: hypothetical protein compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in supernatant experiments

For supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB across organisms